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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                           --------->ANAC58
                                           <----------ID1
                                           --------->ANAC58
                                   ------->TEIL
                                   <-------TEIL    <---------ANAC58
                               <---------------AtSPL8                          ----------->GT1
                               --------------->AtSPL8                          <------MYB83
  ---------->DOF2          --------->TOE1(3)       <---------ANAC58            <------MYB46(1)
------>DOF2                --------->YAB1  --------->ANAC46               <---------LBD16
>AHL20(2)                  --------->TOE2(3)       <---------ANAC46      <---------LBD16
>GT1  ---------->DOF2   <-----------GT1---------->DOF2          <---------YAB1 <---------MYB46(3)
 
aaagaaaaagaaagggagataactatgtaaccataatgtacataaaacgacatgtcttgaacttgttatgacttattcagggaggttaatgtgaagtttg  13001500
                                                 <---------ALFIN1
                                            --------->ANAC58      --------->DEAR3(1)
                                         <---------ARR14(2)       --------->RAP2.6(2)
                                         --------->ARR14(2)      --------->ATERF1(1)
                                        <-------GAMYB            <------NtERF2
                                     <---------ANAC58            <---------LBD16
                                     <---------ANAC58            --------->RAP2.3(1)
                                 --------->GLK1(1)              <---------ORA47(2)
                                 <---------GLK1(1)              <---------ATERF1(1)
                                 <----------TaMYB80             <---------RAP2.3(1)
                                 --------->CCA1(2)             <---------DEAR3(1)
                                <---------ARR14(2) --------->ANAC58--------->LBD16         <--------
                                --------->ARR14(2) --------->ANAC46------>NtERF2           <--------
                          --------->WRKY18(1) --------->ANAC46--------->ATERF1(1)          <--------
                       --------->LBD16--------->LBD16   --------->MYB52(1)  <---------At4g35610
      <-----------RAV1(2)<-----------HVH21  --------->ANAC58 <-----------HVH21        ----------->HVH21
 <------ZmHOX2a(1)   <---------LBD16<---------LBD16--------->ANAC58<------NtERF2    <---------ANAC46
 
atgaggagaccagggaagacatcatccgggtcatggatatgcgggttacgctccacgataaacgggtcgccgcatttttcgctgatgctgtgaagcgtgt  13001600
              ---------->DOF2
              =====================bZIP_DOF
           <---------ANAC46
           <---------ANAC55(2)                                                                     =
       ------>MYB46(1)                 <--------HAHB4                                      <--------
     <---------MYB111(1) --------->O2  --------->ATHB12                                   <---------At4g35610
<-----------HVH21        <---------TGA1a                                                  --------->At4g35610
------>ZmHOX2a(1)        <---------O2 <---------ATHB12                                   --------->ANAC46
-ANAC46------>MYB83      --------->TGA1a     <---------ANAC58                   --------->YAB1     -
-ANAC58============================MYC_MYB   <---------ANAC58              ------>ZmHOX2a(1)<-------
-ANAC58-------->P     ------>ZmHOX2a(1)<---------ICU4              <---------GLK1(2)    <---------LBD16
 
ctccttcacctactacgtatagctcctcacatggcctctccatcatttgcttccctctccaaacctcacagtttcttcctcgataatattctccgctacc  13001700
                                    --------->ARR14(2)                                  <---------MYB52(1)
                                    <---------ARR14(2)                                 --------->At5g28300
                                   <------ZmHOX2a(1)                                ------>NtERF2
                        --------->LBD16                                            <---------ALFIN1
                       --------->ANAC58                                      -------->ZAP1
                       --------->ANAC58                                     <---------At5g28300
                       --------->ANAC46                                    <---------WRKY18(1)
                    <------ZmHOX2a(2)                                     ----------->HVH21
   <---------MYB52(1) <---------LBD16             --------->MYB46(3)      --------->WRKY12
  <-------GAMYB     ======================HOX2a_HOX2a         --------->ANAC55(1)------>NtERF2    --
===========================HOX2a_HOX2a  --------->At4g35610   --------->ANAC46   ----------->RAV1(1)
-MYB52(1)          <---------ARR14(2)   <---------At4g35610   <---------ANAC55(2)<---------ATERF1(1)
----->ZmHOX2a(1)   --------->ARR14(2)<------ZmHOX2a(2)        --------->ANAC58  --------->ANAC46  <-
--ALFIN1      <-----------GT1<---------ZAT6     ------>NtERF2 --------->ANAC58  ----------->HVH21<--
 
tcctccgttgctgtttttaaccgatcccgcaagtgttaggatcagcagtgccaccagacagtaagacgcaactgtgtttgaccgcgacaccgtaactctt  13001800
                                                                                                <---
                                                                                                <---
                                                                                         <---------ANAC58
                                                                                         <---------ANAC58
          --------->YAB1                                                                 --------->TGA1a
         <---------YAB1                                                                  <---------TGA1a
      <---------YAB1                                                                     <---------ANAC46
<---------YAB1                           --------->AHL20(2)                     <----------DOF2 <---
------->YAB1                          ----------->GT1                          *TSS  <-----------RAV1(2)
--------ICU4         ---------->DOF2 ----------->GT1                         ---------->ID1---------
-------YAB1 <---------YAB1   ---------->DOF2          <---------------------WRI1===================bZIP_DOF
 
atcatgactctgattataactggcgaaagagagaaagagagagataaattttgtgatggcaaaacaaacaaatgtgttttgttctttctcaggcgtgagg  13001900
                                                                              <---------ANAC46
                                                                          <---------ANAC46
                                                                          <---------ANAC58
                                                                   <---------TGA1a
    <-----------TBP                                                --------->TGA1a       --------->ANAC46
<---------ANAC46      --------->GLK1(2)                            --------->O2          --------->ANAC58
------ANAC46         <---------GLK1(2)                             <---------O2   --------->AHL20(2)
------ANAC58         <---------ARR11(3)                   <----------DOF2 <---------ANAC58         -
------ANAC58         --------->ARR11(3)                   ===================bZIP_DOF    --------->ANAC58
>ALFIN1             <---------RVE1(1)                  ---------->ID1--------->ALFIN1  <-----------GT1
 
cttgtgtttatgtagggagagagagattttgtgatggctacacaaacaaatgtgttttgttctttctcaaacgtgaggcttgtgtttatataacgccata  13002000
                                                                                 <<<<<<<<<<WRKY38
                                                                        --------->LBD16
                                                                       --------->ANAC58 <------MYB46(1)
                                                                       --------->ANAC55(2)  <------MYB46(1)
                                                                       <---------ANAC55(2)<--------P
                                                                       --------->LBD16  <------MYB83
                                                                       --------->ANAC46<---------TOE2(3)
                                                                       --------->ANAC58--------->MYB59
                                                 <---------ALFIN1<---------AHL20(2)    --------->MYB111(1)
                <---------ANAC58                --------->MYB46(3)    <---------LBD16  --------->MYB46(2)
         ----------->GT1               <---------ATHB12         --------->AHL20(2) --------->WOX13(1)
   <---------MYB52(1)                  --------->MYB46(3)    --------->AHL20(2)  <<<<<<<<<<WRKY43
   --------->DOF5.7(2)            --------->ANAC46           --------->AHL20(1)  <<<<<<<<<<WRKY26
  --------->TOE2(3)           --------->YAB1<-----------HVH21<---------AHL20(2)<------MYB83 <------MYB83
  --------->TOE1(3)----------->GT1--------->ANAC58          <---------AHL20(2) <------MYB46(1)
 ----------->GT1--------->ANAC55(2)  --------->WOX13(1)     --------->AHL20(2) ----------->GT1
------>TEIL     <---------ANAC58  --------->ANAC58       --------->WOX13(1)   --------->MYB59
 
tgtatcgttaattcgttatacgtggtatattactaataagcaatcactgtcaccactcttcaattaaattaatcccgcaatttggtcaattaggtaggct  13002100
               <-----------GT1
           <---------AHL20(2)                                                          <---------RVE1(1)
          --------->AHL20(2)                       <---------ANAC55(2)                 <---------CCA1(1)
       --------->YAB1                              --------->ANAC55(2)                <---------ARR11(3)
    <----------DOF2                              --------->AHL20(2)                   --------->ARR11(3)
   ------>ZmHOX2a(2)                             <---------AHL20(2)                  --------->YAB1
  <------ZmHOX2a(2)                          --------->AHL20(2)               <---------HSFB2a(2)
 <---------ARR14(2)                          <---------AHL20(2)               --------->HSFB2a(2)
 <---------ARR11(3)                          <---------YAB1               <---------ANAC58
 --------->ARR14(2)      --------->MYB46(3) --------->AHL20(2)            <---------ANAC58
 --------->ARR11(3)    <-----------GT1      <---------AHL20(2)        <---------MYB52(1)
 
atgggatcttttataaaatcacattttaaccaaggctagtaagtgattttaattaagtaatggggaatcgactgtttgcttctgaaaatgatattttctc  13002200
                                                  <----------DOF2
                                               ------->TEIL
                            <-----------GT1   <---------CCA1(2)
                        <<<<<<<<<MYB2    <-----------RAV1(1)
                      <------MYB46(1)   <-------MYC3                                               <
                      <------MYB83      <-------MYC2                <---------ARR11(3)             <
                    <---------WOX13(1)  ------->MYC2                --------->ARR11(3)           <--
                  -------->HAHB4        ------->MYC3            ---------->DOF2               ------
                  --------->ATHB12   <---------AtLEC2     --------->ANAC58                   -------
                 <---------YAB1      <---------ANAC58     --------->ANAC58         --------->WOX13(1)
                 --------->ICU4      <---------ANAC58    ------->TEIL     ----------->GT1    -------
 
atatttgatgactcatgaaaatgattggttttcactgtttgcatgtgttgtatctttctgcacgtataaaagacattttgtaaaatcaatcttgttatcg  13002300
                                                             <------ZmHOX2a(2)
                                                             --------->CCA1(2)
                                                            <---------ARR11(3)
                                                            --------->AGP1
                                                            <---------ARR14(2)
                                                            --------->ARR11(3)
                                       --------->DAG2       --------->ARR14(2)
---------DAG2              ----------->RAV1(1)             --------->At4g35610
----------DOF2          --------->ANAC58                   <---------At4g35610
-------TOE1(2)          --------->ANAC58                <------NtERF2             <---------ICU4
--->YAB1  --------->AHL20(2)          --------->DAG2  --------->ANAC46         --------->TOE1(3)  <-
-------->AtSPL3         --------->ANAC46    ---------->DOF2--------->GLK1(1)   --------->TOE2(3) <--
-------->AtSPL8<-----------GT1       ---------->DOF2 --------->RAP2.6(3)     ------->TEIL        <--
 
tactttttgtgaaaaaaataacatgacacacaacaaaacaaaaaggcaaaagagtagacggcagatccacaaatacaatgaaccttaattacaaagtttt  13002400
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AGI:  At4g25433.1   
Description:  peptidoglycan-binding LysM domain-containing protein. similar to peptidoglycan-binding LysM domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G62150.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24588.1); contains InterPro domain Peptidoglycan-binding LysM; (InterPro:IPR002482)
Range:  from: 13001208    to: 13001880    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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