AthaMap TU-Logo
Search
 
   Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
Go to graphical and table display 

1        10        20        30        40        50        60        70        80        90        100 
      <---------ANAC58
      <---------ANAC46
      <---------ANAC58
  <---------ANAC58
  <---------ANAC58          --------->GLK1(1)
----->HVH21                <---------ARR14(2)
->At4g35610                --------->ARR14(2)
->LBD16                    <---------GLK1(2)
--->GT1                  --------->LBD16                                       <---------ANAC46
-MYB46(3)              <---------LBD16            <---------LBD16     ---------->DOF2
--RAV1(2)      <---------ALFIN1                <----------DOF2     ---------->DOF2     --------->YAB1
 
aaactgcttgcgtagccaacactctcaccggattttctaagaaccctctgtttttcggagagaggcatatcaaagaagcggctcgtgtattcatgagcgt  12992100
                         <---------WOX13(1)
                       --------->ATHB12
                      <---------YAB1
                     <---------RAP2.6(3)
                     --------->LBD16
                    <---------ANAC55(2)                                           --------->At4g35610
                    <---------ANAC55(1)                                        --------->HSFB2a(1)
                    --------->ANAC55(2)                             ================================
                    <---------ANAC46                                <------ZmHOX2a(2)       <-------
                    <---------ANAC58                              --------->GLK1(1)      --------->ALFIN1
                    <---------ANAC58                              <---------GLK1(1)  ---------->DOF2
               --------->At4g35610                           <------NtERF2     <---------HSFC1(2)
               <---------At4g35610                       --------->ANAC46      --------->HSFC1(2)
              ----------->HVH21     <------ZmHOX2a(1)    --------->ANAC58 --------->HSFB2a(2) ======
          ------>ZmHOX2a(1)<---------WRKY18(1)           --------->ANAC58 <---------HSFB2a(2) <-----
 
ctgaaataagctcctcgctgatgccgtgattgaccacgaggaagaaaccgtgcttcttacaggcctcagagatcagtctcgaagcatctaaagtggagga  12992200
                                                                              <-----------RAV1(2)
                                                                           --------->ANAC58
                                                                       <-----------TGA1
                                                            --------->HSFB2a(1) <---------At4g35610
<------ZmHOX2a(2)                                           <---------HSFB2a(1) --------->At4g35610
=HOX2a_HOX2a                                <---------HSFB2a(2)        <-----------HVH21
--ANAC46                                    --------->HSFB2a(2)       --------->ETT(2)
=======HOX2a_HOX2a                   ---------->DOF2        <------MYB83<---------MYB52(1)
-ZmHOX2a(1)                    <------ZmHOX2a(1)            <------MYB46(1)--------->ANAC58     ----
 
tggatcagagagaaggttttgaaggtcgatgagaggaacatcaagctcgagaacgttgatggaaggtttttcgtcgtcaggccagatgaattggtttggg  12992300
                                                                                                   -
                                                                                                   -
                                                                                                   <
                                                                                                   -
        <---------TOE2(3)                                                                          -
        <---------TOE1(3)                                                                        <--
    <----------DOF2                                                                    <------ZmHOX2a(1)
   <---------ANAC58                                                       ---------->ID1  --------->ARR11(3)
   <---------ANAC46                              --------->KAN4(2)    <---------MYB52(1)  <---------ARR11(3)
   <---------ANAC58                   ------->GAMYB            <---------ZAT2       <-----------RAV1(2)
----->ARR11(3)                     --------->MYB52(1)          --------->ZAT2      ------>ZmHOX2a(1)
 
atattggcttgaaggttaagcattgaagggttgaagattaacggagtttgaatatttccaaggcctagcttcggtttgtcttcttcctcaggagatgttg  12992400
                                                                      <---------ATHB12
                                                             --------->LBD16
                                                            <---------ANAC46
                                                            <---------ANAC55(2)
                                                           <-------TEIL
                                                           <---------LBD16
                                                          --------->CCA1(2)
       --------->SPL7                                     --------->ARR14(1)
       <---------At5g28300                               --------->ARR14(2)                     ----
       --------->RAP2.6(3)                               <---------ARR14(2)                 --------
      --------->MYB52(1)                                 --------->ARR11(1)                 --------
-------->ANAC58                                         <---------GLK1(1)               ----------->TBP
-------->ANAC58                 --------->DAG2         ----------->ARR10              --------->AHL20(2)
---------ANAC55(2)             --------->ZAT14        <------ZmHOX2a(1)     <----------DOF2 --------
-------->ANAC46                <---------ZAT14    <---------ANAC58  --------->MYB52(1)<-----------TBP
-------->ANAC55(2)      <---------YAB1            <---------ANAC58 *TSS     ------>ZmHOX2a(1)   ----
---------GT1  --------->ICU4   ---------->DOF2    <---------ANAC46--------->MYB46(3)<----------DOF2
 
ttacgaaacttacggccattttgagagattatagtaaagtgagtagtagtattgcgaggagatacgggaaccaatggtccttttagtctttatataagca  12992500
                         <---------ALFIN1
                        <---------ZAT18
                        --------->ZAT18
----->ANAC58       --------->ZAT14                                  --------->ZAT14
->ANAC58          <---------ZAT6       ---------->ID1<---------HSFB2a(2)
->ANAC46          <-----------RAV1(1)<-----------RAV1(1)    ------------>CBF                  <-----
->ANAC58   ------>ZmHOX2a(2)    <------------------------ANAC81   <---------YAB1              ======
----->ANAC58  <---------ZAT14  <----------DOF2       --------->HSFB2a(2)               <---------YAB1
 
agcatttaagtcgatcgtatagtgttgtccacttctttttttgttgtttttgttttctagtagtacaatactatagtctgtaatggagttatcaatactt  12992600
  <---------TGA1a               <---------ARR11(3)
  --------->TGA1a               --------->ARR11(3)--------->ZAT14
  =============================bZIP_DOF        <---------At5g28300
  --------->O2               <---------TOE2(3)<-----------GT1
  =============================bZIP_DOF <---------GLK1(2)
  <---------O2             ---------->DOF2--------->KAN4(1)                            --------->YAB1
-----DOF2    <---------AHL20(2)<------ZmHOX2a(1)  <---------ZAT14                     --------->ICU4
============bZIP_DOF---------->DOF2   <---------TOE2(3)  ----------->GT1      --------->ALFIN1
 
ttgccacgagtgatatataatccaaaagagtaaaggatttttagattattcactgtaatggagttaaattcgctaaaacaagtggtggaatgatgttgac  12992700
                   ------>ZmHOX2a(1)
                  --------->TOE2(3)
             <---------ICU4      <---------YAB1     --------->ATHB12
            <---------ATHB12   --------->YAB1      --------->ICU4                    <----------DOF2
            --------->ICU4    <---------YAB1   --------->ARR11(3)                <----------DOF2  --
     <---------MYB46(3)       <---------AHL20(2)   <---------YAB1              ---------->ID1     --
    --------->ALFIN1     <---------AHL20(2)  <---------TOE2(3)            <----------DOF2    <------
    <---------AtMYB61   --------->AHL20(2)  <-----------GT1      <------------------------ANAC81  --
 
aaaaacagtggtggaatcattcctaaattttatattataaatctaattaacatattgattagtttttttttttttgtcttttgtctttcttttttttttg  12992800
                                                                                   ----------->RAV1(1)
                                                                             <-----------RAV1(1)
                                                                             <---------ANAC46
          <---------AHL20(2)                                                 <---------ANAC58
 ---------->DOF2                                                             <---------ANAC58
------->ANAC58                                                               --------->ALFIN1
------->ANAC58                                                           <-------GAMYB
---------AtSPL8             ----------->GT1           <-----------GT1   <---------MYB46(3)
------->ANAC46     <-----------GT1                <----------DOF2       --------->MYB52(2)        --
 
tacgcaaagctatttttttttttaactgaaatggtgaaaatgttgaaaactgtcttttatcgattccctacatgtttgttgtgtggcaacatggacaatt  12992900
                                                                                                  <-
                                                                                               -----
                                              <---------AHL20(2)                             -------
                                              --------->AHL20(2)                          --------->TOE1(3)
                                        <--------P                                        --------->TOE2(3)
                      <---------ANAC58  <---------WOX13(1)                             --------->GLK1(1)
                      <---------ANAC58 <-------GAMYB                                  <---------ARR14(2)
             <---------ICU4           <---------MYB46(3)                              --------->ARR14(2)
            --------->ICU4            --------->MYB55(2)                             <------ZmHOX2a(1)
          --------->YAB1              ----------->GT1                              <---------TOE2(3)
------->ZAT6<---------ATHB12         --------->ALFIN1    <-----------GT1<-----------GT1<---------GLK1(1)
 
accactattccactaataatgtatagcttactagtcataggtggttgattttatttgaatttactcccttctatttctccatacataaggataccttaaa  12993000
<- Previous    Next ->

AGI:  At4g25420.1   
Description:  GA5 (GA REQUIRING 5); gibberellin 20-oxidase/ gibberellin 3-beta-dioxygenase. Identical to Gibberellin 20 oxidase 1 (20ox1) [Arabidopsis Thaliana] (GB:Q39110;GB:Q38844;GB:Q9FYN4;GB:Q9FYN5;GB:Q9STJ5); similar to AT2353/ATGA20OX2/GA20OX2 (GIBBERELLIN 20 OXIDASE 2), gibberellin 20-oxidase [Arabidopsis thaliana] (TAIR:AT5G51810.1); similar to gibberellin 20-oxidase [Phaseolus vulgaris] (GB:AAC49756.1); contains InterPro domain 2OG-Fe(II) oxygenase (InterPro:IPR005123); contains InterPro domain Isopenicillin N synthase; (InterPro:IPR002283)
Range:  from: 12990894    to: 12992468    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

    printer-friendly version