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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<---------
ANAC58
<---------
ANAC46
<---------
ANAC58
<---------
ANAC58
<---------
ANAC58
--------->
GLK1(1)
----->
HVH21
<---------
ARR14(2)
->
At4g35610
--------->
ARR14(2)
->
LBD16
<---------
GLK1(2)
--->
GT1
--------->
LBD16
<---------
ANAC46
-
MYB46(3)
<---------
LBD16
<---------
LBD16
---------->
DOF2
--
RAV1(2)
<---------
ALFIN1
<----------
DOF2
---------->
DOF2
--------->
YAB1
aaactgcttgcgtagccaacactctcaccggattttctaagaaccctctgtttttcggagagaggcatatcaaagaagcggctcgtgtattcatgagcgt
12992100
<---------
WOX13(1)
--------->
ATHB12
<---------
YAB1
<---------
RAP2.6(3)
--------->
LBD16
<---------
ANAC55(2)
--------->
At4g35610
<---------
ANAC55(1)
--------->
HSFB2a(1)
--------->
ANAC55(2)
================================
<---------
ANAC46
<------
ZmHOX2a(2)
<-------
<---------
ANAC58
--------->
GLK1(1)
--------->
ALFIN1
<---------
ANAC58
<---------
GLK1(1)
---------->
DOF2
--------->
At4g35610
<------
NtERF2
<---------
HSFC1(2)
<---------
At4g35610
--------->
ANAC46
--------->
HSFC1(2)
----------->
HVH21
<------
ZmHOX2a(1)
--------->
ANAC58
--------->
HSFB2a(2)
======
------>
ZmHOX2a(1)
<---------
WRKY18(1)
--------->
ANAC58
<---------
HSFB2a(2)
<-----
ctgaaataagctcctcgctgatgccgtgattgaccacgaggaagaaaccgtgcttcttacaggcctcagagatcagtctcgaagcatctaaagtggagga
12992200
<-----------
RAV1(2)
--------->
ANAC58
<-----------
TGA1
--------->
HSFB2a(1)
<---------
At4g35610
<------
ZmHOX2a(2)
<---------
HSFB2a(1)
--------->
At4g35610
=
HOX2a_HOX2a
<---------
HSFB2a(2)
<-----------
HVH21
--
ANAC46
--------->
HSFB2a(2)
--------->
ETT(2)
=======
HOX2a_HOX2a
---------->
DOF2
<------
MYB83
<---------
MYB52(1)
-
ZmHOX2a(1)
<------
ZmHOX2a(1)
<------
MYB46(1)
--------->
ANAC58
----
tggatcagagagaaggttttgaaggtcgatgagaggaacatcaagctcgagaacgttgatggaaggtttttcgtcgtcaggccagatgaattggtttggg
12992300
-
-
<
-
<---------
TOE2(3)
-
<---------
TOE1(3)
<--
<----------
DOF2
<------
ZmHOX2a(1)
<---------
ANAC58
---------->
ID1
--------->
ARR11(3)
<---------
ANAC46
--------->
KAN4(2)
<---------
MYB52(1)
<---------
ARR11(3)
<---------
ANAC58
------->
GAMYB
<---------
ZAT2
<-----------
RAV1(2)
----->
ARR11(3)
--------->
MYB52(1)
--------->
ZAT2
------>
ZmHOX2a(1)
atattggcttgaaggttaagcattgaagggttgaagattaacggagtttgaatatttccaaggcctagcttcggtttgtcttcttcctcaggagatgttg
12992400
<---------
ATHB12
--------->
LBD16
<---------
ANAC46
<---------
ANAC55(2)
<-------
TEIL
<---------
LBD16
--------->
CCA1(2)
--------->
SPL7
--------->
ARR14(1)
<---------
At5g28300
--------->
ARR14(2)
----
--------->
RAP2.6(3)
<---------
ARR14(2)
--------
--------->
MYB52(1)
--------->
ARR11(1)
--------
-------->
ANAC58
<---------
GLK1(1)
----------->
TBP
-------->
ANAC58
--------->
DAG2
----------->
ARR10
--------->
AHL20(2)
---------
ANAC55(2)
--------->
ZAT14
<------
ZmHOX2a(1)
<----------
DOF2
--------
-------->
ANAC46
<---------
ZAT14
<---------
ANAC58
--------->
MYB52(1)
<-----------
TBP
-------->
ANAC55(2)
<---------
YAB1
<---------
ANAC58
*
TSS
------>
ZmHOX2a(1)
----
---------
GT1
--------->
ICU4
---------->
DOF2
<---------
ANAC46
--------->
MYB46(3)
<----------
DOF2
ttacgaaacttacggccat
tttgagagattatagtaaagtgagtagtagtattgcgaggagatacggg
aaccaatggtccttttagtctttatataagca
12992500
<---------
ALFIN1
<---------
ZAT18
--------->
ZAT18
----->
ANAC58
--------->
ZAT14
--------->
ZAT14
->
ANAC58
<---------
ZAT6
---------->
ID1
<---------
HSFB2a(2)
->
ANAC46
<-----------
RAV1(1)
<-----------
RAV1(1)
------------>
CBF
<-----
->
ANAC58
------>
ZmHOX2a(2)
<------------------------
ANAC81
<---------
YAB1
======
----->
ANAC58
<---------
ZAT14
<----------
DOF2
--------->
HSFB2a(2)
<---------
YAB1
agcatttaagtcgatcgtatagtgttgtccacttctttttttgttgtttttgttttctagtagtacaatactatagtctgtaatggagttatcaatactt
12992600
<---------
TGA1a
<---------
ARR11(3)
--------->
TGA1a
--------->
ARR11(3)
--------->
ZAT14
=============================
bZIP_DOF
<---------
At5g28300
--------->
O2
<---------
TOE2(3)
<-----------
GT1
=============================
bZIP_DOF
<---------
GLK1(2)
<---------
O2
---------->
DOF2
--------->
KAN4(1)
--------->
YAB1
-----
DOF2
<---------
AHL20(2)
<------
ZmHOX2a(1)
<---------
ZAT14
--------->
ICU4
============
bZIP_DOF
---------->
DOF2
<---------
TOE2(3)
----------->
GT1
--------->
ALFIN1
ttgccacgagtgatatataatccaaaagagtaaaggatttttagattattcactgtaatggagttaaattcgctaaaacaagtggtggaatgatgttgac
12992700
------>
ZmHOX2a(1)
--------->
TOE2(3)
<---------
ICU4
<---------
YAB1
--------->
ATHB12
<---------
ATHB12
--------->
YAB1
--------->
ICU4
<----------
DOF2
--------->
ICU4
<---------
YAB1
--------->
ARR11(3)
<----------
DOF2
--
<---------
MYB46(3)
<---------
AHL20(2)
<---------
YAB1
---------->
ID1
--
--------->
ALFIN1
<---------
AHL20(2)
<---------
TOE2(3)
<----------
DOF2
<------
<---------
AtMYB61
--------->
AHL20(2)
<-----------
GT1
<------------------------
ANAC81
--
aaaaacagtggtggaatcattcctaaattttatattataaatctaattaacatattgattagtttttttttttttgtcttttgtctttcttttttttttg
12992800
----------->
RAV1(1)
<-----------
RAV1(1)
<---------
ANAC46
<---------
AHL20(2)
<---------
ANAC58
---------->
DOF2
<---------
ANAC58
------->
ANAC58
--------->
ALFIN1
------->
ANAC58
<-------
GAMYB
---------
AtSPL8
----------->
GT1
<-----------
GT1
<---------
MYB46(3)
------->
ANAC46
<-----------
GT1
<----------
DOF2
--------->
MYB52(2)
--
tacgcaaagctatttttttttttaactgaaatggtgaaaatgttgaaaactgtcttttatcgattccctacatgtttgttgtgtggcaacatggacaatt
12992900
<-
-----
<---------
AHL20(2)
-------
--------->
AHL20(2)
--------->
TOE1(3)
<--------
P
--------->
TOE2(3)
<---------
ANAC58
<---------
WOX13(1)
--------->
GLK1(1)
<---------
ANAC58
<-------
GAMYB
<---------
ARR14(2)
<---------
ICU4
<---------
MYB46(3)
--------->
ARR14(2)
--------->
ICU4
--------->
MYB55(2)
<------
ZmHOX2a(1)
--------->
YAB1
----------->
GT1
<---------
TOE2(3)
------->
ZAT6
<---------
ATHB12
--------->
ALFIN1
<-----------
GT1
<-----------
GT1
<---------
GLK1(1)
accactattccactaataatgtatagcttactagtcataggtggttgattttatttgaatttactcccttctatttctccatacataaggataccttaaa
12993000
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AGI:
At4g25420.1
Description:
GA5 (GA REQUIRING 5); gibberellin 20-oxidase/ gibberellin 3-beta-dioxygenase. Identical to Gibberellin 20 oxidase 1 (20ox1) [Arabidopsis Thaliana] (GB:Q39110;GB:Q38844;GB:Q9FYN4;GB:Q9FYN5;GB:Q9STJ5); similar to AT2353/ATGA20OX2/GA20OX2 (GIBBERELLIN 20 OXIDASE 2), gibberellin 20-oxidase [Arabidopsis thaliana] (TAIR:AT5G51810.1); similar to gibberellin 20-oxidase [Phaseolus vulgaris] (GB:AAC49756.1); contains InterPro domain 2OG-Fe(II) oxygenase (InterPro:IPR005123); contains InterPro domain Isopenicillin N synthase; (InterPro:IPR002283)
Range:
from: 12990894
to: 12992468
Orientation: Reverse
Links:
TAIR
MIPS
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publications
when using AthaMap.
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