Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                   ---------->DOF2                           --------->At4g35610                                --------->YAB1                             <---------At4g35610       ------>ZmHOX2a(2)       <---------ATHB12                            --------->ZAT2   <---------YAB1         --------->ANAC58                               >>>>>>>ZML2 --------GLK1(2)          --------->ANAC58                    --------->ARR14(2)                  --- ------YAB1             ---------->DOF2    <---------MYB52(1) <---------ARR14(2)   <---------ALFIN1 ----At4g35610<----------DOF2--------->WOX13(1)  <---------MYB46(3)   --------->AGP1  <----------DOF2   tgattctgatccatgactttgtgtctgaaagcaatcaaagcatccatttgtttgttcagagccagagcctcagttctagctgtctccactttcagcctgt  12966100                                                               ------->PIF5                                                    ---------->DOF2      ------>NtERF2                                                 --------->TOE2(3)     <---------LBD16                                                 --------->TOE1(3) <----------DOF2                                        ---------->DOF2        <-------PIF5                                    <---------------AGL15     ----------->RAV1(2)                                    --------------->AGL15     <---------At4g35610                                    <---------HSFB2a(2)       <---------ZAT2                        -                                    --------->HSFB2a(2)      ------>NtERF2------>NtERF2             -                                   ----------------->AGL3   <---------ALFIN1                        -                                   <-----------------AGL3   --------->DEAR3(1)                      -                                   <-----------------AGL1  --------->ATERF1(1)                    <--        <---------At5g28300        ----------------->AGL2  <------NtERF2 --------->LBD16          ---       <-----------GT1             <-----------------AGL2 <---------ATERF1(1)                   ----- ------->DOF2         <---------HSFB2a(2) --------->DAG2 --------->RAP2.6(2) <----------DOF2 <-------   aaaagttatttaccttgttgaattctcgatctagggttctaaaaaaggtaacctcaaagtcgccacctgcttctccggcctttaaaaacgtagtctcgta  12966200       --------->HSFB2a(2)    ------>NtERF2                                                                                   <   --------->DEAR3(1)                                                                               -   --------->RAP2.3(3)                                                                              <   --------->RAP2.3(2)                                                                              -  <------NtERF2                                                                    <---------At5g28300  --------->ATERF1(1)                                                             <-----------GT1   <  --------->DEAR4(2)                   <---------WRKY18(1)                       <---------SPL7     <  --------->ORA47(2)                  --------->WRKY38(1)                     =======================  --------->RAP2.3(1)                 --------->WRKY45                        <-------GAMYB         < ------>NtERF2                      --------->ZAT14                          <---------MYB46(3)     < <---------ATERF1(1)               --------->ALFIN1                         <---------ANAC46       <- -------->RAP2.3(2)          ----------->HVH21                              <------NtERF2      <----- -------->DEAR3(1)          <-----------HVH21                            <------NtERF2         <----- -------->RAP2.3(3)        --------->bZIP60(2)                           --------->ATERF1(1)  ------- -------->RAP2.6(2)      <---------ANAC55(1)        <---------YAB1      <-----------HVH21     ------- -------At4g35610        <---------ANAC46         <---------ANAC58      <---------ATERF1(1) <-------- ------>At4g35610        <---------O2 --------->WRKY12<---------GLK1(2)<---------ANAC58     ========= ---->SPL7               <---------ANAC58         <---------ANAC46     <---------ANAC58<---------MYB52(1) --ANAC55(2)             <---------ANAC58         <---------ANAC58     <---------DEAR3(1)   <--------P   agccgccgtctcgagcccttcttcgagccgtgtcacagtgttgaccacaatgtcgtgattctcagagaccaaggcgtcgcggttgtaccgtctggttagg  12966300                                                      <---------HSFC1(2) --------->TOE1(2)                                    --------->ZAT2 --------->TOE2(2)                                    <---------HSFB2a(1) ---------ANAC58                                 <---------HSFB2a(2) -------->TGA1a                                  --------->LBD16 ---------TGA1a                                  --------->HSFB2a(2) -------->ANAC55(2)                             <---------ANAC46 ---------ANAC55(1)                             <---------LBD16 ---------ANAC55(2)                             --------->HSFB2a(2) =========MYC_MYB                               <---------HSFB2a(2) ---------ANAC46                         ----------------->AG ---------ANAC58                         ----------------->AGL1 ----------------------TaNAC69(2)        <-----------------AGL1 -MYB83                     --------->ATHB12   <---------LBD16 -MYB46(1)          --------->ZAT14   ----------->HVH21         <---------ANAC58 -->MYB46(2) <------ZmHOX2a(1)    <---------GLK1(2)   <---------ZAT2                    --------->YAB1 -->MYB59    <---------------AtSPL3 --------->At4g35610         <---------ANAC58    <--------P -MYB52(1)   <---------------AtSPL8 <---------At4g35610         <---------ANAC46 <---------TOE1(3) =========MYC_MYB   <---------ZAT14--------->GLK1(2)  --------->HSFC1(2)         <---------TOE2(3)   ttacgtgcgaaggaaggagtactgctctggttattggaatctgacctattccgggaagcttggatgtcttgaagaatggttttgaggtaagcgtaatcta  12966400                                                                                  <-----------GT1                                                                           <----------DOF2                                                                          ------>ZmHOX2a(2)                                                                         <---------RVE1(1)                                                                        <---------AGP1                                                                        --------->ARR11(3)                        --------->At4g35610                             <---------ARR14(2)                     <------ZmHOX2a(2)                                  <---------ARR11(3)                --------->HSFB2a(2)                                     --------->ARR14(2)        <--                <---------HSFB2a(2)                                <-----------HVH21<---------ANAC58             --------->GLK1(2)                        <---------YAB1    --------->AGP1   --------->HSFB2a(2)          ----------------->AGL1        <----------DOF2 <---------GLK1(2)<------ZmHOX2a(2)        ---      <---------ANAC58  ----------->RAV1(2)           --------->ICU4   <---------CCA1(2) <---------HSFB2a(2)      <---------ANAC58  <---------At4g35610    <---------ALFIN1   --------->TOE1(3) <---------ANAC58   tataagcttcttgccattctgggatcatctgagacacaaactctttcccaaacctcatgattcttcaaccttcagatctttttttttcttgctcgaagtc  12966500                     ------->TEIL       --------->GLK1(2)      <---------GLK1(2)   --------->YAB1 <---------YAB1                                                <----------DOF2   <-- -------ZAT14  <---------ATHB51                  ---------->DOF2        <----------DOF2           --- ------>ZAT14  --------->ICU4           <----------DOF2  ---------->DOF2<---------DAG2    <---------YAB1   tacagtcagaatctcaaattatgaatcttggcctctctctgtctttggaacaaaagttggaaagaagaatgtgactttttgacttttgggttttgagtga  12966600                            --------->ARR11(3)            --------->HSFC1(1)            --------->HSFB2a(2)                                                       ------------>CBF            <---------HSFB2a(2)                                                  --------->YAB1            <---------HSFC1(1)                                              ------------>CBF     ---- -------At4g35610           <---------ARR11(3)                         <---------ANAC58    --------->YAB1 ------>At4g35610    <---------ETT(2)            ----------->RAV1(1)   <---------ANAC58    --------->AHL20(2)   tgctgaaagtttttctagagaggtagaccaggtcttgagtcttaacttagccaacaaaaatatgaattcgttttcgtccacaattttaaacaataaaaaa  12966700                           ---------->DOF2                                     --------->GLK1(1)                         --------->YAB1                                        <---------GLK1(1)                        <---------ATHB12                                      --------->ARR11(3)                        <<<<<<<<<ARR2                                         <---------ARR11(3)   <-                      --------->WOX13(1)      <---------ICU4           <---------YAB1           <----                    ------------>CBF         <---------AHL20(2)      ----------->GT1   ----------->GT1 ----->AHL20(2)--------->MYB52(1)            --------->AHL20(2)  <---------AHL20(2) <---------MYB52(1)   aaaatacccaaaaaaaaaaacagacaatcaaaagtcaaaactcttaaaaaattactaacaaaaatatgaaattgttataagatatcgttttgttatatat  12966800                                                                            ------->TEIL                                                                  <---------MYB52(1)                                                                 --------->TOE2(3)                                   --------->AHL20(2)            --------->TOE1(3)         <---------TOE2(3)         <---------AHL20(2)          <---------TOE2(3)         <---------TOE1(3)        --------->AHL20(2)          --------->MYB52(1)<-----------GT1 --------->YAB1              --------->AHL20(2)           --------->DAG2    <---------TOE2(2) --------->TOE2(3)           <---------AHL20(2)          ---------->DOF2 --------->ANAC58 --------YAB1               --------->AHL20(2)     ---------->DOF2--------->DOF5.7(2)               - -----YAB1           ----------->GT1              --------->AHL20(2)     --------->ANAC58           -   cattcttaattaaggtttataagttgtaaattaaaatttaaaaactatgaaattaaagcaaaagtaacgttagcaacgcatgttacatcgtttttgtgca  12966900                                          --------->ATHB51                                          -------->ATHB1                                          --------->ATHB12                                         <---------AHL20(2)                                         <---------ATHB51                               <---------ANAC58                                         --------->ICU4                       <---------AHL20(2)                                      --------->AHL20(1)                     --------->AHL20(2)                                      <---------AHL20(2)                     <---------AHL20(1)         --------->REM1(1)            --------->AHL20(2)                     <---------AHL20(2)   <---------TOE2(2)                  <---------AHL20(1)            <---------YAB1      <---------ANAC46   ------->TEIL                      <---------ATHB12             --------->YAB1        <---------ANAC58 -------->ANAC58         <-----------GT1 --------->AHL20(2)      <---------YAB1   <---------AHL20(2) -------->ANAC58  ----------->GT1    --------->AHL20(2)       <---------YAB1 --------->YAB1   aaacgcatgttacatctatcgagtaattttccattgccaataaattattgatataactagaagtttgattatagttcaataaaatttatggcctgttttc  12967000  Previous    Next  AGI:  At4g25350.1    Description:  SHB1 (SHORT HYPOCOTYL UNDER BLUE1). similar to EXS family protein / ERD1/XPR1/SYG1 family protein [Arabidopsis thaliana] (TAIR:AT1G26730.1); similar to ATP binding / ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT1G14040.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G35350.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68453.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68461.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68452.1); contains InterPro domain SPX, N-terminal (InterPro:IPR004331); contains InterPro domain EXS, C-terminal; (In Range:  from: 12963392    to: 12966458    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version