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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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            ---------->DOF2                                   --------->GLK1(2)<---------YAB1
      --------->ANAC46  --------->YAB1     ----------------->AGL3<----------DOF2                   -
 
tcaatctactcacaacaaagcttacaatcacactcacaaaaacagagccaaaaacagagcaagagactcttttgatcaaactatgaaagtttcaataacc  10349200
                                                                --------->ARR11(3)
                                                                <---------ARR11(3)
                                   --------->ANAC46    <------ZmHOX2a(1)
                                <---------ZAT14     <------ZmHOX2a(1)                           ----
  ----------->GT1               --------->ZAT14   <---------TOE2(3)                           ------
 ----------->GT1       <---------ARR11(3)         <---------TOE1(3)       --------->ZAT6--------->YAB1
--------->DOF2    --------->AHL20(2)         <---------ZAT6 ---------->DOF2            <------ZmHOX2a(2)
 
aaaaaagataaaaactttcaattcaataacttcagtacacagaaactacagttaaggaggactcaaagaacttactatcagtaagtttcgatcaaaatca  10349300
                                                                                      --------->ANAC58
                                                                                      --------->AtLEC2
                                                                                      --------->ANAC58
                                                                                     --------->WOX13(1)
                                                                                    ---------->DOF2
                                                                                   <---------ATHB12
                                                                           ---------->DOF2----------
                      --------->HSFC1(2)                                  --------->AHL20(2)
                      <---------HSFC1(2)                    <---------ALFIN1      --------->ANAC58
----->At4g35610    ---------->DOF2         ---------->DOF2 --------->MYB46(3)     --------->ANAC58
--->YAB1     ----------------->AGL3  ---------->DOF2      >>>>>>>>>>>>>>>>>LFY   --------->WOX13(1)
 
gaagcccaaaattccctccaaaaaaagcttcgaacttgaacaaagtgaaagactaaaaactcaccactgtttctaaataaaagacaatcaagcaaaagct  10349400
                                           <----------DOF2
                                      <<<<<<<ZML2
                                   --------->HSFB2a(2)
                                   <---------HSFB2a(2)                                    --------->HSFB2a(1)
                                ------->TEIL                                         --------->HSFC1(1)
                                --------->ARR14(2)                                   <---------HSFB2a(2)
                                <---------ARR14(2)           ---------->DOF2         <---------HSFC1(1)
                 ----------->GT1--------->GLK1(2)    --------->AHL20(2)              --------->HSFB2a(2)
>DOF2    ---------->DOF2       <---------ARR14(1)    <---------AHL20(2)          <---------GLK1(2)<-
 
tctaagaacccctaaaacccttgtaaaattcaacgaatctagaacccttttagcattaaaatcaaaaagaagaaacccttattagcttctcgaaccctct  10349500
                                                                        <---------AHL20(2)
                                                                        *TSS
                                                                        --------->AHL20(2)
                  --------->GLK1(2)                                     <--------ATHB1
         <---------MYB59                                                <---------ICU4
         --------->TOE2(3)                                              --------->ATHB51
         --------->TOE1(3)           <---------AHL20(2)                <---------ATHB12
       ------->TEIL                 <---------AHL20(1)                 <---------ATHB51
   --------->HSFB2a(2)              --------->AHL20(1)                 --------->ICU4
   <---------HSFC1(1)--------->HSFB2a(2) <---------AHL20(2)    --------->ANAC46
   --------->HSFC1(1)<---------HSFB2a(2) --------->AHL20(2)    --------->ANAC58          ------->TEIL
   <---------HSFB2a(2)       <---------ANAC46                  --------->ANAC58         <---------CCA1(2)
--------At4g35610<---------GLK1(2) <---------AHL20(2)   <---------GLK1(2)        <---------At4g35610
 
ctgcttctcgaacctaaacagcttctggacttgggtatatatattttaatcagacaagagaatttcaagcagcaataatttgtctgcttctgtatctcta  10349600
                                                                                                 <--
                                                                                                <---
               --------->LBD16                                                                  ----
              <---------ANAC46                                                              <-------
             <---------At4g35610                                                           ---------
             --------->At4g35610                                                           <--------
             <---------LBD16                                                              <---------MYB52(1)
         <-----------RAV1(1)                                                             --------->LBD16
       <------------CBF                                                                <---------LBD16
      --------->ATHB12                                                              <---------WRKY18(1)
      --------->ATHB51                                                             --------->WRKY12
      -------->ATHB1                                              ---------->DOF2  --------->WRKY38(1)
      <---------ICU4                              <------ZmHOX2a(1)--------->DAG2  ----------->HVH21
     <---------YAB1                         <----------DOF2 ----------->GT1       <---------WOX13(1)
     --------->ICU4                      --------->GLK1(2) <-----------------------TaNAC69(2)<------NtERF2
 
tctataccattattgctgcggaaatatcagagagagagagagagactctttgaggagagaagaccgtagaaaagtaaacgagtcgattgacccggtgggg  10349700
            <---------ARR14(2)
     ------>NtERF2
    --------->DEAR3(1)
-------GLK1(1)                                                       <---------DOF5.7(2)
------ARR14(2)  <-----------HVH21                                   <---------ARR14(2)
----->ARR14(2)<-------TEIL                                          --------->ARR14(2)      --------
--MYB46(3)  --------->ARR14(2)                 --------->ATHB12  <---------ANAC55(2)       <--------
>ALFIN1 ------>NtERF2  <---------DAG2 --------->AHL20(2) --------->AHL20(2)           --------->MYB52(1)
-ANAC46--------->DEAR3(1)  <---------ANAC46<-----------GT1      >>>>>>>>>>AtSR1   --------->MYB52(1)
 
atttacgacgacgacgattcgtcaaacctttcgtcgattttttatataactgattagcgattaaaaacgcgtaaacgataacaaaaaacgaacagtttct  10349800
                                                            --------->YAB1
                                                   --------->ANAC58
                                               --------->ANAC58
                                               --------->ANAC58
                                            <---------REM1(1)
                                     --------->DAG2--------->ANAC58
      <---------YAB1                 <---------TOE2(3) --------->ANAC58
  <---------GLK1(1)       <---------YAB1 <-------TEIL  --------->ANAC58        --------->YAB1     <-
->GLK1(2)   <-----------GT1        ---------->DOF2<---------------AtSPL3--------->At4g35610       <-
-GLK1(2) <---------YAB1<----------DOF2  <--------P<---------------AtSPL8<---------At4g35610  -------
 
gagggatttgtgattatacgatttagcttttgattacaaaaaggttgatgaagcaagtacgaatcagaacagaacagctgtttcatagttttacaaagat  10349900
                             --------->YAB1
   <---------ANAC46         <---------YAB1
   <------MYB83           --------->YAB1
   <------MYB46(1)        <---------ICU4              --------->ATHB12
  <---------AtMYB61<---------AHL20(2)                 -------->HAHB4
  --------->MYB111(2)    <---------YAB1               --------->YAB1
  --------->MYB46(2)  --------->AHL20(1)             <---------YAB1
  --------->MYB111(1) <---------AHL20(1)--------->ANAC58                                           <
  <---------MYB46(3)  --------->AHL20(2)--------->ANAC58     <-----------------AGL2              <--
  --------->MYB55(2)  <---------AHL20(2)--------->ANAC46    <---------At4g35610       <----------DOF2
--------ANAC58   <---------YAB1<---------YAB1     --------->ICU4            ----------->GT1  -------
--------ANAC58--------->AHL20(2)      <-----------GT1--------->ICU4        --------->DAG2    <------
-->ATHB12     <---------AHL20(2)--------->YAB1   --------->ARR11(3)       ---------->DOF2    -------
 
tgggtttggtggaatgttttattattttattattatcaaaatcaccccatgagataatgatagagctgtttttggcataaagtttatttctttcaattat  10350000
                                             <---------MYB46(3)
                                   ------>ZmHOX2a(2)                                          <-----
                                  <------ZmHOX2a(2)                                        ------>ZmHOX2a(2)
                                 --------->ARR11(3)                                      --------->ARR11(3)
                                 <---------ARR11(3)                             <-------TEIL  <-----
   ----------->GT1               --------->ARR14(2)                          <---------HSFC1(2)
---------AHL20(2)                <---------ARR14(3)                          <---------HSFB2a(1)
-------AHL20(2)    ------->TEIL  <---------ARR14(2)                          --------->HSFC1(2)
-->AHL20(2)     <---------ATHB12 --------->AGP1                              --------->HSFB2a(1)
---AHL20(2)   --------->WOX13(1) --------->ARR14(3)                   <---------RAP2.6(3)<---------ARR11(3)
-->YAB1      <---------WRKY38(1)<---------GLK1(1) <---------TOE2(3)   <---------SPL7<---------MYB46(3)
 
ataaaaatgtgaatagtcaatgaatataagcatagagatcttgtttgtttgttaatgtagaagcatttatggccgtaagaaaattcgttgttgatctctt  10350100
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AGI:  At4g18880.1   
Description:  AT-HSFA4A (Arabidopsis thaliana heat shock transcription factor A4A); DNA binding / transcription factor. Identical to Heat stress transcription factor A-4a (HSFA4A) [Arabidopsis Thaliana] (GB:O49403;GB:O82078); similar to AT-HSFA4C (Arabidopsis thaliana heat shock transcription factor A4C), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G45710.1); similar to heat shock transcription factor [Phaseolus acutifolius] (GB:AAL12248.1); contains InterPro domain Winged helix repressor DNA-binding (InterPro:IPR011991); contains InterPro domain Heat shock factor (HSF)-type, DNA-binding; (InterPro:IPR000232)
Range:  from: 10347593    to: 10349573    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
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