Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                            ------>ZmHOX2a(1)                     <----------DOF2                  <---------ALFIN1                =================HOX2a_HOX2a               --------->ARR14(2)               <---------ARR14(2)           ======================HOX2a_HOX2a           ------>ZmHOX2a(2)                                                                   ------         <---------ARR14(2)                                    <---------AHL20(2)             <------         <---------AGP1  --------->TOE2(3)                     --------->AHL20(2)          <---------YAB1         --------->ARR14(2)                          <-------MYC3 <---------ARR11(3)       <---------TOE2(3) ------->ARR14(2)================HOX2a_HOX2a         ------->MYC3 --------->ARR11(3)--------->ANAC58 --------ARR14(2)------>ZmHOX2a(2)         <---------YAB1  --------->YAB1           --------->ANAC58 --------TaMYB80<------ZmHOX2a(2)        --------->YAB1  ------->TEIL             ---------->DOF2   aaattcccatcgatctggatccactttcctaaaaccctgttcatcaaaattggcacatgaatcatataaatcttatcaaacacatcaagcactaagatta  9871200                     --------->ANAC46       <---------ATHB12                                             --------->GLK1(2)   ------->GAMYB   --------->ANAC46                         ------>NtERF2  --------->ANAC46<---------REM1(2)          <---------ANAC46<------NtERF2 --->KAN4(1)--------->GLK1(2)         <---------ATHB12    <---------ZAT18 ---YAB1--------->YAB1              --------->GLK1(1)     --------->ZAT18                 <----------   ttcaacgaaatcataatctatacacagtacaattagagaaatcaatggtggagaaattagggcgcgagagaatttatacttacataggtgtttaactggc  9871300                                                                       <---------ATHB12                                                                  ------>ZmHOX2a(2)                                                                 <------ZmHOX2a(2)                                                                <---------PCF2                                                                <---------ARR14(2)                                                                --------->ARR14(2)                                                            <---------MYB52(1)                                            <------ZmHOX2a(2) --------->ABI4(2)    --------->ZAT2                         <---------ARR11(3) <---------MYB46(3)    <---------ZAT2  <---------ANAC46       --------->ARR11(3)--------->ALFIN1 ---------->DOF2    <---------YAB1--------->MYB59          --------->LBD16    ------->TEIL -GT1  ----------->GT1            <---------TOE2(3)      <---------LBD16   <---------ATHB12   gaacaaagctggagaaattgttgtgtttgaagtatttaggtagaagatcacgagaaaactccggtggatcccaaacaatgaagctattgttcgtcggact  9871400                          ------>ZmHOX2a(2)                          ===================================HOX2a_HOX2a                         <------ZmHOX2a(2)                         --------->HSFB2a(1)                         --------->HSFC1(2)                         <---------HSFB2a(1)                         ====================================HOX2a_HOX2a                        --------->ARR14(2)                        <-----------ARR10                        <---------ARR11(1)                        <---------ARR14(3)                        --------->ARR11(3)                        <---------ARR14(2)                        <---------ARR11(3)                        --------->ARR14(3)                       <---------ARR14(1)                       <---------CCA1(2)                      --------->LBD16                     <---------TOE1(2)                             ---------->DOF2                    <------NtERF2                                --------->At5g28300                    --------->ATERF1(1)                          <------NtERF2                    <---------LBD16                             ----------->GT1                   <---------ATERF1(1)                         <---------DEAR3(1)                   ------>NtERF2                              <------NtERF2                  --------->DEAR3(1)                        --------->ALFIN1                  <---------DEAR3(1)                        <---------RAP2.3(3)                 --------->ATERF1(1)                        <---------DEAR3(1)                <---------ATERF1(1)                      --------->DAG2                <-----------HVH21                   <---------TOE1(3)              --------->SPL7                        <---------TOE2(3)                              <-            <-----------HVH21             --------->ANAC55(2) <---------ABI4(1)      ---------->DOF2-           <---------ANAC58         <-----------HVH21  ---------->DOF2            <---------ANAC55(2)           <---------ANAC58        --------->bZIP60(2)<------ZmHOX2a(1)       <----------DOF2     <--   ccatgagacaatcgcgtccgtcgccggatcttccaccatgtcatacgtcttgctaaggaaagggggcggtaaagagttcgcattaagtaaagtcgctgga  9871500                    --------->bZIP60(1)                    --------->bZIP60(2)                    <---------bZIP60(1)                    --------->RRTF1(3)                    <---------ATERF1(2)                    --------->O2                    --------->ATERF1(2)                    --------->RAP2.3(2)                   --------->ORA47(2)                   --------->DEAR4(2)                   --------->ERF1                   --------->RRTF1(1)                   --------->RAP2.3(1)                   --------->ATERF1(1)                  <---------ATERF1(1)                  ------>NtERF2                  <---------RRTF1(1)                  <---------RAP2.3(1)                 <---------DEAR3(1)                 --------->DEAR3(1)                 <---------ANAC46                 <---------PCF2                --------->ATERF1(1)                --------->RAP2.3(1)                <---------ABI4(2)                <------NtERF2               <---------ERF1              <---------RAP2.3(3)              <---------DEAR3(1)              --------->ALFIN1            --------->ABI4(2)            --------->MYB55(2)            <---------MYB46(3)           --------->ALFIN1                                   --------->ORA47(1)           <---------DEAR3(1)                                --------->DEAR3(1)           <---------AtMYB61                              <---------ALFIN1          <---------ABI4(1)                          <---------DEAR3(2)        <---------DEAR3(1)                           ----------->GT1                ---------->DOF2       <---------LBD16                               --------->LBD16            ---------->DOF2       --------->LBD16----------->HVH21             --------->ATERF1(2)   --------->SPL7      <---------ANAC46<------NtERF2                 <---------ATERF1(2)   --------->SPL1(2)     <---------LBD16--------->RAP2.3(3)            <---------LBD16     <---------ANAC58   <---------ARR14(2)<-----------HVH21            --------->LBD16      <---------ANAC58   --------->ARR14(2)------>NtERF2                ------>NtERF2       <---------------AtSPL8  <---------GLK1(2)<------NtERF2                 --------->DEAR3(1)   <---------------AtSPL3  --------->ARR14(2)--------->RRTF1(2)           --------->ANAC46     --------------->AtSPL3  <---------ARR14(2)--------->DEAR3(1)         ------>ZmHOX2a(1)     <------------------SPL14 --------ANAC46<---------RAP2.3(1)  <---------ARR14(2) ----------->HVH21 <---------SPL1(1) -------->LBD16<---------ATERF1(1)  --------->ARR14(2)--------->At5g28300--------->SPL1(1) -------LBD16--------->ATERF1(1)    <---------MYB52(1)<---------MYB52(1)<---------SPL7   tgcggattccgcggtggtggcgccgtcacagcctcgccgatattcgttcctccgccggtaacaccgtccattttcgtacggataaagaaagagaagtatt  9871600                                                                                                    -                                                                                               <-----                                                                                              -------                                                                                             --------                                                                                        <---------ANAC46                                                     --------->YAB1          <----------DOF2---------                                                    <---------YAB1         ---------->ID1 <----------                 <----------DOF2             --------->ANAC46     <----------DOF2       <---------ANAC58          --------->YAB1               --------->CCA1(2)---------->DOF2   <-----------GT1 --------->ALFIN1    <-----------GT1           ----------->HVH21    <---------ARR11(3)    <<<<<<<<<<GT-3b<---------ANAC58   tgaaatttacaaacatacccttttatttctctgtgactcagatataaacgcgatatcataaagatgggcttttatttttctttttagtttgtgtgtgggc  9871700                                                         <---------AHL20(2)                                                        <---------AHL20(2)                                                   ------------>CBF                                                 <---------ICU4                                                 --------->YAB1                                              <---------ICU4                                              --------->YAB1                                             <---------YAB1     <------ZmHOX2a(2)                       --------->ICU4             --------->ETT(1)    <---------ARR11(3)                     --------->YAB1--------->AHL20(2)                        --    --------->ARR11(3)                   --------->AHL20(1)            --------->RAP2.6(3)   -------- --------->DOF2                          <---------AHL20(1)        <------------CBF        <------NtERF2 ----PCF2                                --------->AHL20(2)<------------CBF              <---------ANAC58 ---->TCP11(1)  --------->YAB1          --------->YAB1  <---------AHL20(1)               <---------ANAC58 ->ZAT18      <---------YAB1 --------->At4g35610--------->ICU4  <----------DOF2          <---------ANAC46 >ALFIN1  <----------DOF2 <---------ANAC58<---------YAB1--------->AHL20(2)<------NtERF2 <---------LBD16 -RAV1(1) <---------DAG2  <---------ANAC58<---------AHL20(2)<---------WOX13(1)<-------TEIL--------->LBD16   caaaaagatcaactttattaataactgggcctgctaaaacaaatataataataatcaatttaattgctatattgtcggcatacattttctggcgggaaag  9871800                                                     <-------GAMYB                                                    <---------MYB46(3)                                                  <------NtERF2                                                 ------>NtERF2                                                 --------->LBD16                                                 <---------ATERF1(1)                                                <---------DEAR3(1)                                                --------->DEAR3(1)                                                <---------ATERF1(2)                                                --------->ATERF1(2)                                               <------NtERF2                                               <---------LBD16                                               --------->ATERF1(1)                                               --------->RAP2.3(1)                                              <---------RAP2.3(1)         <---------MYB59                                              ------>NtERF2             <---------ARR14(2)                                              <---------ATERF1(1)       --------->ARR14(2)                                             <---------DEAR3(1)       --------->LBD16--------->At4g35610                                           <-----------HVH21          ----------->HVH21  *TSS<------ZmHOX2a(1)                   --------->O2   <-----------GT1------->TEIL <---------ZAT2 -  <------ZmHOX2a(1)                       --------->ANAC46         --------->MYB52(1)<---------At4g35610 ------->At4g35610                       ------>ZmHOX2a(1)   --------->ANAC46        --------->ZAT2 - -->DOF2                    --------->CCA1(2)--------->DEAR3(1)   <---------ALFIN1  ------>NtERF2   -   cagaggaaggagagtgagagagagagagagaaatgagttcgtcctcgtcgccggcgattgaaccagacacaccggacctgatttgccagctcgataatgt  9871900                         <---------SPL7                         <-----------HVH21                        <---------ANAC58             <---------ZAT18             --------->ZAT14         <---------DEAR3(1)          --------->ANAC58         <---------MYB46(3)--------->SPL7  <-----------RAV1(2)     <---------AtMYB61  <---------ANAC58 ------>NtERF2     <---------HSFB2a(1)<---------ANAC46--------->DEAR3(1)       --------->LBD16 -------->ANAC46    <---------TGA1a  --------->ANAC46         ------>ZmHOX2a(1) -------->ANAC58--------->ANAC58     --------->ANAC58 <-----------GT1 -------->ANAC58--------->ANAC58  --------->ARR14(2)<-----------GT1                     <----------DOF2   tcaaggaatggtcgatgcactcacttgcgtccgatggaaacgccaccaggtttttatctccatcctccccaaattcaatctagggttcttctttgatttt  9872000                                                          >>>>>>>>>ARR2                                                         --------->ATHB12                        <----------DOF2      --------->ANAC58                   <------ZmHOX2a(1)         --------->ANAC58                 --------->LBD16             --------->ANAC46                <---------HSFB2a(2)          --------->ANAC55(1)                --------->HSFB2a(2)          --------->ANAC55(2)                    --------->ANAC46                <---------LBD16              <---------ANAC55(2)     --------->GLK1(2)             --------->ARR14(2)             <---------LBD16 <---------MYB46(3)      --------->ANAC58             <---------ARR14(2)           <---------REM1(2)<---------WOX13(1)       --------->ANAC58            <---------MYB52(1)       --------->At4g35610<---------YAB1 <-----------RAV1(2)   ctgaaaacttctccgtttccaggatgctttagtagaattatctgaacacggaatagttttgattgttgaagaatcaggttgtcttcaagccaaagtttat  9872100  Previous    Next  AGI:  At4g17750.1    Description:  HSF1 (ARABIDOPSIS HEAT SHOCK FACTOR 1); DNA binding / transcription factor. Identical to Heat stress transcription factor A-1a (HSFA1A) [Arabidopsis Thaliana] (GB:P41151;GB:O23615;GB:Q0WNT9); similar to ATHSFA1D (Arabidopsis thaliana heat shock transcription factor A1D), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G32330.1); similar to heat shock factor, putative [Brassica oleracea] (GB:ABD65622.1); contains InterPro domain Winged helix repressor DNA-binding (InterPro:IPR011991); contains InterPro domain Heat shock factor (HSF)-type, DNA-binding; (InterPro:IPR000232) Range:  from: 9869831    to: 9871616    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g17760.1    Description:  damaged DNA binding / exonuclease. similar to hypothetical protein 40.t00049 [Brassica oleracea] (GB:ABD65164.1); contains InterPro domain Repair protein Rad1/Rec1; (InterPro:IPR003021); contains InterPro domain Repair protein Rad1; (InterPro:IPR003011) Range:  from: 9871802    to: 9873386    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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