Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Publications Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   1        10        20        30        40        50        60        70        80        90        100            ----------->HVH21         <-----------HVH21         <-----------TGA1        --------->TGA1a        <---------TGA1a        <---------O2        =============================bZIP_DOF        --------->O2                                  ---------->DOF2       <-----------STF1                           ---------->DOF2      <---------ALFIN1    <----------DOF2        <------ZmHOX2a(1)  <----------DOF2   cttaaacaacacgtcacctcttctatcacttttggaagattagattccataggaaagaaagaagaatagtctttaaggttctgagtttgtgtaaccacgg  8710700                                                                                                 ----                                                                                                 ====                                                                                                <----                                                                                                =====                                                                                               <-----                                  <-----------RAV1(2)             ----------->HVH21            <-----       ------->TEIL          ------>ZmHOX2a(1)              ------>MYB46                     --------      <-----------GT1      ----------->RAV1(2)              ------>MYB83        ---------->DOF2------   aagttgatgaaccattccaatcgtctaattcctggagcagggtatcagaaaatggagagaccaaacttgtgacagaaggttctaaagttgaagaccagat  8710800 -->ZmHOX2a(2) ==========================HOX2a_HOX2a --ZmHOX2a(2) ==========================HOX2a_HOX2a ----AGP1 ------ARR10 --->ARR10                                                             ----------->GT1  ----------->HVH21 --->AGP1           <------ZmHOX2a(1) <-------TEIL          ------>ZmHOX2a(1)      --------->PCF5   cttgccgaaatctgatggagaaggacaatcagagtaagggttcagactctgaagtctgtgtcctaaaccagtgcagttactagcggtccactgacatcct  8710900                                                <------ZmHOX2a(1)                                                ===============================HOX2a_HOX2a                                        <-------GAMYB                             <----------DOF2                                     --------->ALFIN1                       --------->ALFIN1                                   --------->TGA1a                      ------>ZmHOX2a(2)                                   =============MYC_MYB                 =============================HOX2a_HOX2a                                   <---------O2 ==============================HOX2a_HOX2a ============================================bZIP_DOF                  <------ZmHOX2a(2)      <------ZmHOX2a(1) ---------->DOF2                   <---------TGA1a                     ==============================HOX2a_HOX2a   tggcaaagagaaacattttcgttcatacagtgtactgccgtgggttgtaaggaacatttctcgcagagtagagatcgcgtgtgtctttgagacagaggat  8711000                <-----------HVH21                <-----------TGA1                                                     <-----------HVH21    --------------->AtSPL8    ---------->DOF2 ----------->ARR10    <----------DOF2---------->DOF2   tcgctgagtgtacattaacgtcacagtttaaacaaagtttagccgaatcagatttgcagtagattaatgctttttcggttccacaaaagtcacatcgagc  8711100                                                              <---------ALFIN1            ------>ZmHOX2a(2)                                          ------------>CBF  <---------ALFIN1           <------ZmHOX2a(1)                                 <-----------GT1------------>CBF          ------>ZmHOX2a(1)        *TSS             ---------->DOF2 <-----------GT1  <---------ALFIN1=======================HOX2a_HOX2a   ctccatacttcttcgaagacaaaactccaaagaaataacgatttctcaatcccaatcgctacacacacctaaaatcctatagcatagaaggatcgtgaga  8711200                                                       <----------DOF2  ----------->HVH21                             <-----------GT1  <-------TEIL        ----------->HVH21                  <------ZmHOX2a(2)<-------TEIL     ------->TEIL--------->ALFIN1   caaaaacagaacattcagagatcaaacaaaattacgattcattataggttcatgtatctttttaatgtgtgactgtgactgtgactaatacatggttgtg  8711300                                                      --------------->AtSPL8              -----------   tttgaatgttagagaaacactcacaaactaagaaaatgtggattctcgagaccgaatcagtactaaaatcacaatgtctagaaactcataaccagttaat  8711400                                                                                        --------->ALFIN1                                                                                      --------->ALFIN1 >GT1   <-----------GT1            ----------->GT1                          <----------DOF2   tacagagttttttctaaacaagagtataacaataatcgtgtaaaattgtttatgtttcagggttccagagattagaagctttacaagggtgtgtgagagt  8711500                                                                  <---------ALFIN1                                                               <---------PCF5                       <                                                               <---------TCP16                      =                                                               --------->PCF2                <------NtERF2                                                              <---------PCF2             ============                                                           --------->ALFIN1              <---------TGA1a                                                         --------->ALFIN1                <---------O2                ---------->DOF2                          <-----------RAV1(1)             --------->O2        <------ZmHOX2a(1)      ---------->DOF2         ------>ZmHOX2a(1)                 --------->TGA1a   ccagtgagaaggagatgagaaagaacagagaagaaaaggttttgctctgtttttatcctgtgtggggtccaccttgttaagcgggtttgccacgcggggt  8711600  Previous    Next  AGI:  At4g15250.1    Description:  zinc finger (B-box type) family protein. Identical to Putative zinc finger protein CONSTANS-LIKE 11 (COL11) [Arabidopsis Thaliana] (GB:O23379); similar to zinc finger (B-box type) family protein [Arabidopsis thaliana] (TAIR:AT3G21880.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24166.1); contains InterPro domain Zinc finger, B-box; (InterPro:IPR000315); contains InterPro domain Zinc finger, CONSTANS-type; (InterPro:IPR002926); contains InterPro domain CCT (InterPro:IPR010402) Range:  from: 8709942    to: 8711108    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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