Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                 ------                                                                                             <-------                                                                                             --------                                                                                             ------->GAMYB                                                                                             ========                                                                                           -------->P                                        --------->ALFIN1                                   ==========                                      <---------ANAC46                                    ------->GAMYB                                     <------NtERF2                                        ===========                                    --------->LBD16                                      <---------MYB111(1)                                   <---------LBD16                                       <---------MYB111(2)                                 <---------ZAT2                                          <---------MYB55(2)             ----------->HVH21   --------->ZAT2                  --------->YAB1    <---------ZAT6   -        <---------At4g35610     --------->ANAC58            XXXXXXXXXXXXXXXXXXXX>MIR849  <---------MYB52(2)   ----------->HVH21            --------->ANAC58        <------ZmHOX2a(1)      --------->LBD16 ------ <---------ANAC58          <---------ZAT18      ----------->RAV1(1)        --------->GLK1(2)--------- <---------ANAC58   --------->YAB1<---------LBD16      ----------->GT1 --------->YAB1    --------->MYB46(3)   tttgtgtgacagcaaatgacattgatcagagcgcaagccggggtgaagaacaacataaggaaactaaacatgagcataatccgtagtggcaacaaccaca  8378000      --------->ALFIN1     <-------MYC4     ------->PIF4     <-------PIF4     <-------MYC3     ------->MYC3     <-------PIF5     ------->MYC2     <-------MYC2     ------->MYC4     ------->PIF5     --------------------->WRI1    --------->O2    ===================bZIP_DOF    ===================bZIP_DOF    <---------TGA1a    <---------O2    --------->TGA1a   ------->TEIL --->ANAC46 --ALFIN1 ->AtMYB61 =============MYC_MYB                                                                            ---- =============MYC_MYB                                                  ---------->DOF2         ------ =============MYC_MYB                  ------>ZmHOX2a(1)          ----------->GT1       ------>MYB83 -------->AtLEC2        ------>ZmHOX2a(1)  --------->REM1(1)   ---------->DOF2          ------>MYB46(1) --->bZIP60(2) ---------->ID1       ---------->ID1      <---------ARR11(3)            --------->TOE2(2) >MYB46(3)  <----------DOF2     <----------DOF2         --------->ARR11(3)            --------->TOE1(2)   tcatgcacgtggttcttttcgctctcctcgtcttctttgtcctctacatctggtctaagatgttcaaaagataaaaagactctccaaacctacgatgaat  8378100                                                                  ----------->GT1                              <---------GLK1(1)        <------ZmHOX2a(2)                              --------->GLK1(1)       <---------ARR11(3) ----->YAB1               --------->HSFB2a(2)         --------->ARR11(3)                <---------ARR14(2) ->TEIL                   <---------HSFB2a(2)     ---------->DOF2<---------------AtSPL8 --------->ARR14(2)   cttcatttcaatcggcgaagaatgaaatctagaaatccccttgctcaagtttaaaagatcatcgagagttgtacaaactggagtaagaagaattcgctta  8378200                                                                                        --------->YAB1                                        <----------DOF2                                 --------->TOE1(3)                                <---------DAG2                                          --------->TOE2(3)                                <----------DOF2                                      --------->WOX13(1)                             <---------ALFIN1                                      <---------ATHB12                             --------------->AGL15         --------->MYB46(3)    ------>MYB46(1)  ---        <---------YAB1    <-----------GT1        <---------ANAC46 <----------DOF2------>MYB83 <------   ctctctagagattatagaacataacattttcccacttttagacttttagttttgtgttcgaacaaactcttttgtcgataaccaaatcaatcttaaccat  8378300                                                                                               ------                                                                                 --------->ANAC58                                                                                 --------->ANAC46                                                            --------->PCF2<---------ANAC58     ------                                                      <-----------GT1     <---------ANAC58    -------                                              <---------ANAC58        <----------DOF2         -------                                              <---------ANAC46       <---------ANAC58         -------     --------->AHL20(2)                       <-------GAMYB <---------ZAT18<----------DOF2  ---------     <---------AHL20(2)                       <---------ANAC58------------>CBF   --------->ANAC58 <-- ------>MYB52(1) <---------MYB46(3)          <---------MYB46(3)      <---------ANAC58<---------ARR11(3) ---ICU4      <----------DOF2         xxxxxxxxxxxxxxxx>smallRNA(i)  ----------------------->TaNAC69(2)   taccggtttaattagactttggttcaatatcaaatactactacttcttggttgtattaacagggcccaatggctttgctttctacgaaatctctacaacc  8378400     <------MYB46(1)     ----------->GT1     <------MYB83                                                                       <---------TOE1(2) ------>CBF                        <---------ICU4<---------ARR11(3)                    --------->LBD16 --->MYB46(3)            *TSS      --------->YAB1<---------ARR14(2)                    ------>ZmHOX2a(1) -->ANAC58             <-----------HVH21<---------ANAC58                             ----------->RAV1(2) -->ANAC58        <-----------GT1 <---------ATHB12                              --------->ARR11(3) -->ANAC46        <---------At5g28300   <---------ANAC58                        <---------ARR11(3) >REM1(1)  <---------TOE2(3) ------>ZmHOX2a(1)   --------->ARR14(2)  ------>ZmHOX2a(1)<---------LBD16 ----------CBF   <-----------GT1--------->WOX13(1)   ------>ZmHOX2a(1)      ---------->DOF2   aattggaaggtttaatgttttaccctgtctcctccaatcatgtcgtttcaaaatcctctaatttctcagtcctagcgctaaagctcttcctgggttcgag  8378500                                                                           --------->ATHB12                                   --------->DAG2                          --------->MYB52(2)                                  ---------->DOF2                        <---------MYB52(1)                             <---------HSFB2a(2)                         --------->DOF5.7(2)                             --------->HSFB2a(2)                       <---------MYB46(3)                            <---------LBD16                         --------->MYB52(2)              --------->ATHB12--------->LBD16                     <--------P                <-------- <---------GLK1(1)         <---------LBD16<------NtERF2<---------ETT(2)----------->GT1   ------>ZmHOX2a(2)   ttgatttctcagtcatcgattgaaattttctcgggaaaaagggcctcatcgtctccatcgacaacgaggttagtcgttaattggattttgatccgtctct  8378600                                 <---------ZAT18                --------->LBD16                                 --------->ZAT18            <---------ARR14(2)        --------->GLK1(2)                               <-------MYC3      <---------GLK1(2)                    --------->ARR14(2)                    <---------CCA1(2)            --------->ARR14(2)        --------->AHL20(2)--------                  <---------ANAC58               <---------ARR14(2)  ----------->RAV1(1)     <-------                  <---------ANAC58          <---------ARR14(2) <---------ANAC55(2)    <---------ARR14(2)               <----------DOF2 ------->MYC3 --------->ARR14(2)<-----------------------TaNAC69(2) -CCA1(2)  <-----------GT1<-----------HVH21<---------CCA1(2)--------->ARR14(2)       <---------GLK1(2)   ctaccacaaattgtttcctttcgtctcttgtcatgtgctcttaccatatccgattcgcatcaaatccgtagcaacatttaaaactaagaatctgcaactg  8378700                                                                           <----------DOF2                                                                          <---------ANAC58                                                                          <---------ANAC58           <---------At4g35610                                            <---------ANAC46           --------->At4g35610           <---------AHL20(2)              <------NtERF2           <---------ZAT2               --------->AHL20(2)             <---------RAP2.6(2)           --------->ZAT2         --------->TOE2(3)                  <---------MYB46(3)       <---------ANAC58  --------->ATHB12--------->AHL20(2)         <---------DEAR3(1)       <---------ANAC58 <-------TEIL    <---------AHL20(2)          <---------AtMYB61       <---------ANAC46 <---------YAB1  <---------AHL20(1)          --------->ALFIN1<----------DOF2 ->At4g35610         <---------YAB1<---------MYB52(1)            --------->DAG2 <---------ANAC58 --At4g35610<---------ANAC46     ----------->GT1               ---------->DOF2  <---------ANAC58   agaactgtttcgtagctgggattatgttcattgaagcgttaatttaattctattgaacagttattgaaaggtggtggcttttgcttctttgtttcacaga  8378800                                                     <-----------RAV1(2)                                                    <------NtERF2                                                   ------>NtERF2                                                  --------->ETT(2)                                                  <---------ETT(2)                                                 ---------->ARF1                                                <-----------HVH21                                             <---------ANAC58                                             <---------ANAC58                        <---------YAB1                     <---------WRKY38(1)  <-----------GT1                       --------->MYB52(2)                     <---------WRKY45  <---------ARR11(3)                     <---------MYB52(1)                    <<<<<<<<<<WRKY11   --------->ARR11(3)                <---------TOE2(1)                    <<<<<<<<<<WRKY6    <---------GLK1(2)                 <---------TOE1(1)       ----          ---------->DOF2             <---------RVE1(1)    ----------->GT1    <--------P         <---   aaccagaaaatgcaaagtcttagtcaacttggaccttcagagattttccttgtcgccagaagagaaaaacccagtacgaggttagttatgagcgactcga  8378900  Previous    Next  AGI:  At4g14600.1    Description:  Identical to Bet1-like protein At4g14600 [Arabidopsis Thaliana] (GB:Q8VXX9;GB:O23316); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G29060.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61644.1); contains InterPro domain Target SNARE coiled-coil region (InterPro:IPR000727) Range:  from: 8376396    to: 8378331    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g14605.1    Description:  mitochondrial transcription termination factor-related / mTERF-related. similar to PDE191 (PIGMENT DEFECTIVE 191) [Arabidopsis thaliana] (TAIR:AT4G38160.2); similar to PDE191 (PIGMENT DEFECTIVE 191) [Arabidopsis thaliana] (TAIR:AT4G38160.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO14594.1); contains InterPro domain Mitochodrial transcription termination factor-related (InterPro:IPR003690) Range:  from: 8378425    to: 8380709    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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