Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Publications Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   1        10        20        30        40        50        60        70        80        90        100    <---------TGA1a                                                    ----------->GT1  ----------->RAV1(2)                                            ------->TEIL  --------->O2                                                <---------------AGL15  --------->TGA1a                                            <-----------------AGL1  <---------O2                                               <-----------------AGL2 --->AtSPL8               ------>ZmHOX2a(1)            <----------DOF2 <--------P   tctcacctgagtttccagcttcagtttcctcactagagtactgactattcagagacacttttgactgaatctggtaagtttcagagctaaaactagtgct  6369100                                                        <----------DOF2                        ------                                              ----------->GT1                 <---------AtLEC2 <-----                ---------->DOF2             ---------->DOF2    ----------->ARR10               <-----   gcattcggagttttcagtcaaagactgatcagaaacttgtactccagaaagtaagaatctttggtgagaattgcaagtgtgaatggcttcatcacaatca  6369200                                                ------>ZmHOX2a(1)                                              ----------->RAV1(2)                              --------------->AtSPL3 -->ATHB1                     --------------->AtSPL8 ---ATHB1                     <---------------AtSPL8                                 ---------->CDC5 -------ATHB5     ------>ZmHOX2a(1)   <----------DOF2  <-------TEIL          ---------->DOF2     ----   ttgcacagcattgctctatcctctaagcagaagaagtacccttttctctcctgcatatacatatatatgagacatcggttaaagagctcagcgagtgttt  6369300                                                     --------->ALFIN1------->TEIL    ---------->DOF2                         <-----------RAV1(2)    <------NtERF2    ------>NtERF2 === ------>DOF2     ----------->RAV1(2)  <------ZmHOX2a(1)   <------NtERF2 <----------DOF2           <--   aaagagaaaagagattggaacctggcagatatcacatagaggagctccagaagctgtggtggctgaggctgcatctttttgtaaggcgactcggtgatgt  6369400                                    =============================================bZIP_DOF                                    <---------O2                                    <---------TGA1a      ----------->GT1               --------->TGA1a    ==========================================bZIP_DOF    ---------->DOF2     ------->TEIL--------->O2 =============================================bZIP_DOF      ----------->RAV1(2)                   <-- --------DOF2     <-------TEIL  <-----------HVH21        <-------TEIL ---------->DOF2         <------   ctttggaaaagtttattagcttcatgaaccttaatgtcacatggcttgcatagtacagcttcatctgaacaacaaagtacttctgcttcagccttttcac  6369500                                                     ------------>CBF                                                 <------------CBF -------ALFIN1       ------>ZmHOX2a(1)  ------------>CBF                         ----------->HVH21  < -----GT1  ------->TEIL    <----------DOF2  ----------->GT1                    <----------DOF2     <-   acacttcacattgtatcttcatccttcaactttataatccaaatcaatgtaaattgccaatacacagacagaacaaatgttctttgacatttatgagaat  6369600                                                                                            xxxxxxxxx                                                                                            xxxxxxxxx                                                                                           xxxxxxxxxx               --------------->AGL15                                  <------ZmHOX2a(2)    xxxxxxxxxx               <---------------AGL15                          --------->ALFIN1            xxxxxxxxxxx              <-----------------AGL3                        --------->ALFIN1              xxxxxxxxxxx            ------->TEIL        ====================================bZIP_DOF             xxxxxxxxxxxx       ----------->GT1          ---------->DOF2             <-----------RAV1(1)          xxxxxxxxxxxx ------ZmHOX2a(1)       <------ZmHOX2a(1)                 --------->TGA1a                xxxxxxxxxxxx ---------ID1 ----------------->AGL3                      <---------TGA1a               ----------->RAV1(2)   taggacaaggagtgaatctaaatataggaaacaagaaagaacaagcttaaataagttcacatgtgtggtgggatcataagttatatcaaaacctggctct  6369700          <------------CBF        <------ZmHOX2a(1)        ==================HOX2a_HOX2a xxxxxx>smallRNA(le3) xxxxxx>smallRNA(si3) xxxxxx>smallRNA(se3)                     --------------->AGL15 xxxxxx>smallRNA(fl3)                     <---------------AGL15 xxxxx>smallRNA(i)                       ----------------->AGL3 xxxxxx>smallRNA(se3)          ---------->DOF2 xxxx>smallRNA(s)   <----------DOF2      ----------------->AGL2                                 <---- xxxxxx>smallRNA(se3)       --------->AtLEC2<-----------TBP                                    ------ xxxx>smallRNA(i)  ------>ZmHOX2a(2)     <-----------------AGL3                       ------------>CBF   gataccaagaggaattgatgatctttattcatgaaaagagagaactatatatagatatacaacgatatgtcgaagacgaaatttttatctcaatatgggg  6369800                                                                   <----------DOF2                                                                  ------>ZmHOX2a(2)                                                                 <------ZmHOX2a(2)                                            -------->P          <---------AGP1                                            ------>MYB46        --------->AGP1        ------>MYB46                        ------>MYB83 ----------->HVH21        ------>MYB83                       ------>ZmHOX2a(1)  ----------->ARR10                  <--- ---GAMYB         <------NtERF2            =============================HOX2a_HOX2a          <------- ----->GT1<----------DOF2                  ==============================HOX2a_HOX2a      <----------   ttattagaccaactttgggtggcatttaaaccaataaatgttctcctaccaaaatctccatgacaagatctttttcagaagcttgtatagttttactttc  6369900                                                                           <---------PCF5 -------DOF2                                                               <------ZmHOX2a(1) ---DOF2                                                           ---------->DOF2 -GT1                    <----------ID1                       ---------->DOF2             ---------->DOF2   ttttgaaaacataaattgacaaacatagcgacaagcttctcttaagacacaagcatggcaagccaaaagtaaaggcaggaccacaatatgcataaagact  6370000  Previous    Next  AGI:  At4g10240.1    Description:  zinc finger (B-box type) family protein. similar to zinc finger (B-box type) family protein [Arabidopsis thaliana] (TAIR:AT1G78600.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN72879.1); similar to Os06g0152200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056834.1); contains InterPro domain Zinc finger, B-box; (InterPro:IPR000315); contains InterPro domain Zinc finger, CONSTANS-type; (InterPro:IPR002926) Range:  from: 6368932    to: 6369522    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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