Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                         <---------AHL20(2)                                       <---------ATHB51                                 --------->AHL20(2)                                                 -                                --------->AHL20(2)                                                 <-       ------>ZmHOX2a(1)    --------->AHL20(2)   <---------ANAC58                                  --   ---------->ID1           <---------AHL20(2)   <---------ANAC58                                  <- -------DOF2          ----------->GT1  --------->AHL20(2)                                 <---------- ---DOF2            ---------->DOF2  --------->YAB1                        <---------ANAC46 ---------   tttttgttcctatacatctattgaaagtaaaaaaataaaaaataattcagtacttgccatcttagatagtatatgttttgtagataagttttatacacta  2294500            <---------LBD16   --------->AHL20(2)   --------->YAB1                                                                        <xxxxxxxxxxx  <---------YAB1                                                                         ------->PIF5  --------->ICU4                                                                         <-------PIF5 -------->YAB1                     --------->ARR11(3)                                   <---------At4g35610 --------AHL20(2)         ----------->HVH21                                             ----------->RAV1(2) ------->AHL20(2)--------->At4g35610                                                    --------->At4g35610 --------YAB1    <---------At4g35610                   --------->ANAC58         <------ZmHOX2a(1)   < -GT1 ---------->DOF2  <----------DOF2                 --------->ANAC58  xxxxxxxxxxxxxxxx>smallRNA(i) >ANAC46  --------->ARR11(3)   --------->ANAC55(2)   <---------ALFIN1 <---------GLK1(2)------->TEIL <   tataattataaagacctggagatgacttttgacatgtgatattgtgaggtctctcacacccataagactcaaaattctcttaggagttgcacctgcaaat  2294600                                                                        --------->ARR11(3)                                                                        <---------ARR11(3)           --------->YAB1                    --------->CCA1(2)      ---------->DOF2           --------->AHL20(2)      <---------------AGL15       <---------ICU4        --------->YAB1            --------->TOE2(3)           <---------ATHB12              <--------  <------ZmHOX2a(1)    ----------->GT1     <------ZmHOX2a(1)  --------->ICU4            ---------->DOF2 xxxxxxxxxxxxsmallRNA(i2)     <---------AHL20(2)---------->DOF2--------->YAB1    <----------ID1 ---------TOE1(3)    --------->ZAT14      ----------->GT1   --------->YAB1       ----------->GT1 ---------TOE2(3)    <---------ZAT14   ---------->DOF2   --------->TOE2(3)    ---------->DOF2 <------   ttaaggagaacaataatatcgactatagtgaattaatctaaaaaaggatataaagagaacattaatcatggaaaggtcttaaaaggaaaaaaaagattgt  2294700                              <---------AHL20(2)                             --------->AHL20(1)                             <---------AHL20(2)                             --------->AHL20(2)                             <---------AHL20(1)                      <----------DOF2              <---------AHL20(2)          --------->GLK1(2)                                      <---             <---------AHL20(2)      <---------At4g35610                                        -----       --------->YAB1 --------------------->WRI1   <---------YAB1                              <----- -GLK1(2)    --------->AHL20(2)      --------->At4g35610              ---------->DOF2          ------ ---MYB46(3) <---------AHL20(1)    <---------HSFB2a(2)           --------->CCA1(2)          ---------   tgatttcaatgacaatttttttttctttgaatttatttcagaagaatcgtcttgttatagttttgcgatatggaaagaaaaccgcttactctcttcgcca  2294800                                            --------->ZAT14                                            <---------ZAT14                                 <--------                                         <---------DEAR3(2)                                 <--------                                     ------>ZmHOX2a(2)                                      ---------                                    <------ZmHOX2a(2)                                       ---------                                   --------->ARR11(3)                                       <--------                                   <---------ARR14(2)                                      <---------ARR14(1)                                   --------->ARR14(2)                            ------>ZmHOX2a(2)                                   <---------ARR11(3)      --------->ARR14(2)   <------ZmHOX2a(2)                                   <---------ARR14(3)      <---------ARR14(2)   --------->CCA1(2)                                   --------->ARR14(3)    --------->LBD16       --------->AGP1 ------>ZmHOX2a(2)                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)           <-----------ARR10                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)            <---------ARR11(3)                            --------->GLK1(1)          <---------LBD16         --------->ARR11(3) ---NtERF2                  <---------GLK1(1)    <---------ZAT18       ------>MYB46(1)     <---------CCA1(2) ->NtERF2                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)        ------>MYB83    --------->MYB52(1) ----ALFIN1                --------->ARR14(2)    <---------ZAT14     <---------MYB59  ------->GAMYB --->DEAR3(1)              <---------ARR14(2)    --------->ZAT14 ----------->HVH21   --------->MYB46(3) >ANAC46              --------->MYB52(1)<---------DEAR3(1) <---------GLK1(2)   <---------AGP1<------ZmHOX2a(2)   ccgagtttttcaataacttgaataaaacggatatcaagatcgtcggtccagtgcattcgcggattgtctgacctaatgtaagatctaaccatcggatctt  2294900                                                            <---------AHL20(2)                                                          <-----------TBP                                                        <---------AHL20(2)                                                        <--------HAHB4                                                        -------->ATHB1                                                        --------->AHL20(2)                                                        --------->ATHB51                                                       <---------ATHB12                                                       --------->ICU4                                                   ------------>CBF                                                <---------ZAT14                                <-----                                                --------->ZAT14                             <--------                                                <---------ZAT18                          <---------AHL20(2)                                              <---------ZAT18           <---------AHL20(2)<---------TOE2(3)                                              --------->ZAT18 --------->HSFB2a(2)      <---------YAB1  <---------AHL20(2)                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)        --------->AHL20(2) -ARR14(2)                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)          <---------AHL20(2) -AGP1 <-----------GT1                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   ---------->DOF2 ------ >ARR14(2)                           <------------CBF  <---------ATHB51--------->AHL20(2)--------->AHL20(2) >ARR11(3)                        --------->YAB1--------->ZAT18        <---------AHL20(2)--------->YAB1 -ARR11(3)    ----------->GT1  --------->YAB1--------->ALFIN1 <---------HSFB2a(2)     --------->YAB1   gcattttttttatctctcgtaaaatttttagtttgataatattgagagtgtgcaccaattatttatagaaaaattatatggaaaagaatattaatattta  2295000                                                                  <---------YAB1                                                        <-------MYC2                                                        ------->MYC3                                                        <-------MYC3                                                        ------->MYC2                                                       <---------ANAC55(2)                                                       --------->TGA1a                                                       <---------ANAC55(1)                                                       <---------bZIP60(2)                                                       <---------O2                                                       <---------ANAC58                                                       --------->ANAC55(2)                                                       <---------ANAC46            --------->TOE2(2)                          <---------ANAC58    <---------ICU4            --------->TOE1(2)                          <---------TGA1a     <---------AHL20(2)     <--            --------->TOE1(3)                          --------->O2    <---------AHL20(2) <------ZmHOX2a(1)            --------->TOE2(3)                      <-----------HVH21   --------->AHL20(2)----------->GT1 ----AHL20(2)                                 <---------YAB1    <-----------GT1  --------------->AGL15 -ICU4--------->YAB1                         <------------CBF  <---------AHL20(2)<---------------AGL15 --->AHL20(2)           --------->AHL20(2) <---------YAB1      --------->AHL20(2)----------->GT1 ----   tttcccaaaaataacctaagaaacaaatatttagagctagtaaatgttattgttgtcacgtgtaatttatcatttaaatatttctgtaaaaaggatatat  2295100                                 --------->At4g35610                    --------->AHL20(1)                                 --------->ZAT2                         <---------AHL20(1)                                 <---------ZAT2                      --------->YAB1                          <---------ANAC58                        --------->YAB1                          <---------ANAC58                      <-----------TBP                        <-----------GT1                        <---------ICU4           ----------->GT1                        <---------AHL20(2)                  --------->YAB1             --------->DAG2                    --------->AHL20(2)                      --------->AHL20(2)        ---------->DOF2                    <---------AHL20(2)  ------->MYC3     --------->YAB1 <---------AHL20(2)    -------           <---------TOE2(3)----------->HVH21 <----------DOF2 --------->ICU4   --------->AHL20(2) -------AHL20(2)--------->AHL20(2)      <-------MYC3     <---------ICU4 --------->AHL20(2)--------->AHL20(2) ----->AHL20(2) --------->ICU4   <---------At4g35610  --------->YAB1<---------YAB1 --------->AHL20(2)   aaaatcgcattttaagaaatatttattttcttgacagctccatgtgttcttttctctaataataatatttataataaattttaaaataaaaagttaatac  2295200                             <--------ATHB1            --------->AHL20(2)                             <---------ICU4        --------->AHL20(2)                          --------->YAB1           <---------AHL20(2) --------->KAN4(1)                <---------AHL20(2)            <---------ARR11(3)      <---------KAN4(1)            --                --------->AHL20(2)        <---------ANAC58      ---------->DOF2                    --   <---------GLK1(2)    <---------TOE2(3) <---------ANAC58 --------->AHL20(2)                 ------- -->ZAT6       --------->AHL20(2)       <---------YAB1 <---------AHL20(2)            <---------AHL20(2)   tactagatttgtttcaattttattctaagaataattctatctatgcttgatatttatataaataaacaaagaacaatccaaaactaatttatggcataaa  2295300                                                                                              -------                                                                                             <-------                                                                                             --------                                                                                          <---------YAB1                                                                                       <---------AHL20(2)                                                                                       --------->AHL20(2)               <-----------GT1                                                        --------->YAB1              --------->YAB1                                                         <---------YAB1             <---------YAB1                                                         --------->AHL20(2)           <---------ICU4                                                           <---------AHL20(2)           --------->YAB1                                                           <---------AHL20(1)          <---------YAB1                                                            --------->AHL20(1)       <---------YAB1        ------>MYB46(1)                                       --------->AHL20(2) ------->TOE1(3) --------->YAB1     <---------AHL20(2)                            <---------YAB1 ------->TOE2(3)<---------YAB1      --------->AHL20(2)                 --------->AHL20(2)--------->AHL20(2) --->DOF2 --------->ICU4     ------>MYB83                              <---------AHL20(2)<---------AHL20(2)   gccttaatgcttattattatcattttgaaccaaatgatataaataacttaaaaacatcccaaacaaatatgaattatatatgtcattatattaatataaa  2295400  Previous    Next  AGI:  At4g04580.1    Description:  myb family transcription factor. similar to DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT2G38300.1); similar to Os04g0566600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053582.1); similar to hypothetical protein OsI_016427 [Oryza sativa (indica cultivar-group)] (GB:EAY95194.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding (InterPro:IPR014778); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447) Range:  from: 2293759    to: 2294904    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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