Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                   <---------YAB1                               <---------CCA1(2)                    <----------DOF2            --------->YAB1                     <---------ALFIN1       <---------At4g35610 ------>ZmHOX2a(2)   <---------ICU4         ------>ZmHOX2a(1)---------->DOF2    <---------At4g35610  --------->ARR11(3)   <---------ATHB12<-----------GT1  --------->ANAC46   tcatgcttctgcttcgcatacacttttgatctcttatctttgttcttaatcatcgaaggaagtatcacattcctcttctcacccccactgaaagtagact  679100                                                                                    <---------HSFC1(2)                                                                                    --------->HSFC1(2)                                                                              --------->MYB52(1)             --------->GLK1(2)                                               <---------SPL7            <---------GLK1(2)                                            <---------DEAR3(1)           --------->At4g35610                                          <---------ORA47(1)     ------->TEIL                   --------->YAB1                      --------->SPL7  --------->ANAC58         --------->AtMYB61                    <-----------GT1--------->SPL7  --------->ANAC46     ------>ZmHOX2a(1)              ------->TEIL    ----------->HVH21          <---  --------->ANAC58 <---------ARR14(2)           ------>ZmHOX2a(1)     <---------SPL7--------->HSFB2a(1) --------->LBD16   --------->ARR14(2)   <----------DOF2      <---------ICU4<------NtERF2       <-----   ttccacgaacatcagattccatttcctcaccatcaccatcatctttcttcctcttgaaccccatttttacgacggacggcgaacgaagcctctctctctt  679200                 <---------ZAT2                 --------->At4g35610                 <---------At4g35610              ---------->DOF2         --------->RAP2.6(3)                                       ----------->GT1                 --        --------->MYB52(1)                                       <------------CBF             <------ ------AHL20(2)  --------->ZAT2      *TSS    --------------------->WRI1                       <------ -----DOF2<----------ID1        --------->MYB52(1)    <-----------GT1                       <--------   taatcgatgaaaacggcaaagctgagaatgaagacgacggagactaacttagggtttatcgactcaaaattgaaaaacctatacaaatgggcctatgctt  679300                                                      <---------SPL7                                                   ------>NtERF2                                                  --------->DEAR3(1)                                        --------->TOE2(3)                                  <---------AHL20(2)<------NtERF2 ------->PCF2                    --------->YAB1   <---------DEAR3(1) ---ANAC58                      <---------YAB1   --------->ATERF1(1)  ------->GAMYB ---ANAC58  --------->YAB1  <----------DOF2     <-----------HVH21  --------->MYB52(1) -YAB1<----------DOF2      --------->YAB1   <-----------GT1        <-----------GT1               ----   gggcccatctttaagcataggcctatctatctttataatattcgttaaaccgtcgccgtatcagtctattaacgggcttaattctgggccttgaagaaac  679400                        <---------ARR11(3) ------->TEIL                     <---------TOE2(3) --------->LBD16                    <-----------GT1   <---------ANAC46                 --------->YAB1      <------NtERF2                 <---------ICU4     ------>NtERF2--------->At4g35610                               <-         <---------ANAC58          --------->ANAC46         <---------ANAC58          --------->ANAC58         <---------ANAC58          <---------DEAR3(1)       <---------ANAC58          --------->ANAC46         <---------ANAC46          --------->DEAR3(1)------------>CBF   *TSS          --------->ANAC58 ----->TOE2(3)  <---------YAB1  --------->ANAC46 <---------At4g35610   <---------MYB46(3)  --------->AtLEC2   attatactatggcgtttcattataacgatattaaacgacgccgtgtatgttagctatcaatttcgtttctcagtggtcactatgcgatgcgccatggaag  679500             --------->At4g35610             <---------ZAT2             --------->ZAT2             <---------At4g35610           <-----------RAV1(2)         <---------ARR14(2)         --------->ARR14(2)         <-----------HVH21                                       <---------ZAT14       <---------SPL7                                       <---------ZAT14      <---------ANAC46                                      <---------At4g35610      --------->DEAR3(1)                                    --------->ZAT14     <------NtERF2                                          <---------ZAT2     <-----------------------TaNAC69(2)                     --------->ZAT2                       <---     --------->RAP2.3(1)            --------->LBD16         --------->At4g35610                  ----    --------->ZAT18                --------->DEAR3(1)     --------->ANAC46             <----------DOF2   --------->DEAR3(1)             <---------LBD16    --------->ARR14(2)            <---------ANAC46  <---------ABI4(2)           <-----------HVH21      <---------ARR14(2)            <---------ANAC58  --------->ATERF1(1)        --------->WOX13(1) <---------At5g28300       ------>ZmHOX2a(1)      ---- <---------ATERF1(1)     --------->LBD16       <-----------GT1   --------->ZAT14   <---------ANAC58 -----ZmHOX2a(1)       <---------LBD16       ----------------------->TaNAC69(2)<-----------HVH21 <---   aggaagcgccgtatcagctgcaatttccggtctatcaccggcgaagaattcaccgtttccacagctctgcaatgtccttctcgtcgcgtctttgtccaag  679600                                                                           <---------ANAC46                                                                         ==========================HOX2a_HOX2a                                                                       <---------HSFC1(2)                          ----------->HVH21                            --------->HSFC1(2)                      <---------HSFC1(2)                               ------>ZmHOX2a(2)                      <---------HSFB2a(1)                            --------->ARR11(3)                      --------->HSFB2a(1)                            <---------ARR11(3)                      --------->HSFC1(2)                             --------->AGP1                  --------->ANAC46                         <---------MYB46(3)             <---------MYB52(1)           ----------------->AGL1     <---------ARR14(2)            --------->LBD16               <-----------------AGL1     <---------GLK1(2)       <-------TEIL ------ARR11(3)   --------->ANAC58<---------ARR14(2)  ----------->RAV1(2)------>ZmHOX2a(1)  <------ZmHOX2a(2) ----->ARR11(3)   --------->ANAC58--------->ARR14(2)--------->ARR14(2) <---------HSFB2a(1) --------->AGP1 ----->ARR14(3)--------->ZAT14------>NtERF2         <---------ARR14(2)<------ZmHOX2a(2)    <---------ARR11(3) ------ARR14(3)<-------TEIL  --------->ANAC46   <---------LBD16      --------->ARR14(2)    --------->ARR11(3)   accttgtctcagtccggtacacgaagcctcgacgcgaattcgataccgatttcggaacctgtggttctccagatccttcgtagaaactccatagatccat  679700                                                                          --------->ARR11(3)                                                              --------->ZAT2                                                              <---------ZAT2                                                          ----------->RAV1(1)                                                        --------->At4g35610<---------RVE1(1)                       <---------ZAT6                   <---------At4g35610<---------CCA1(1) <-------                       ----------->GT1      --------->CCA1(2) --------->At4g35610            --------          <---------GLK1(1)                --------->ARR14(2) <---------At4g35610      <---------MYB52(1)   --------->GLK1(2)<---------AtMYB61   ------>ZmHOX2a(1)----------->HVH21<---------ARR11(3)---------   cgaagaagctagatttcttccgatggtgttattctcttcgtcctggatacaaacattcagcgacagcttactctcagatatttcgcactgtttgtcggac  679800                            <------MYB83                            <------MYB46(1)                         <---------ANAC58                         <---------ANAC58                    <---------ARR14(2)              <---------ARR14(2)                                                      --------->ARR14(2)             <---------HSFC1(2)                                                       <---------GLK1(2)     <---------LBD16--------->ARR14(2)                                             --------->HSFB2a(2)     <---------HSFB2a(2) <---------ANAC46                                   <---------ARR14(2)     --------->HSFB2a(2) <---------AtLEC2                                   --------->ARR14(2)  <----------DOF2   <---------GLK1(2)                                       --------->ARR11(3) <---------ANAC58 --------->LBD16                                           <---------ARR11(3)     <- <---------ANAC58--------->HSFB2a(2)                                      ----------->ARR10       <-- --SPL7      --------->HSFB2a(1)                                       <---------ANAC46--------->GLK1(2) --->HVH21   --------->HSFC1(2)       <---------TOE2(3)             <---------DEAR3(1)<---------ARR14(2) >ETT(1)     <---------HSFB2a(1)   <---------ATHB12          <-----------RAV1(2)   <---------HSFB2a(2)   agggcttctcggagaagttcccgatttgcttggttcaatgaaggaagatggagttaacttggaccagacgatggcgaagatacttctagattctctaatc  679900                                                           <---------ANAC58     <--------P                                            <---------ANAC46    <---------MYB52(1)                                     <---------ANAC58  <---------YAB1  <---------HSFB2a(2)                               <------ZmHOX2a(1)     <---------ARR14(2) --------MYB52(1)        <------ZmHOX2a(1)      --------->ICU4         <---------ZAT6 -------SPL7         <---------MYB52(1)      <------ZmHOX2a(1)      ------>ZmHOX2a(1)   <---------YAB1   cgttcgggtaagttcgaatcagcgttaggagttttggattacatggaggaattaggagattgcttaaatcctagtgtatatgattctgttcttattgctc  680000  Previous    Next  AGI:  At4g01560.1    Description:  MEE49 (maternal effect embryo arrest 49). similar to IMP4 [Arabidopsis thaliana] (TAIR:AT1G63780.1); similar to putative RNA processing factor 1-like [Solanum tuberosum] (GB:ABB86266.1); contains InterPro domain Brix (InterPro:IPR007109) Range:  from: 677054    to: 679237    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g01570.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G62910.1); similar to Pentatricopeptide repeat [Medicago truncatula] (GB:ABD33347.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66190.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 679472    to: 681940    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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