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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                                                      --------->GLK1(2)
                                                                                     --------->ARR14(2)
                                   --------->AHL20(2)               <---------At4g35610
<---------ATHB12                 --------->TOE1(3)                  --------->At4g35610
--->ANAC58                       --------->TOE2(3)              --------->ARR14(2)   <---------GLK1(2)
--->ANAC58                ------->TEIL                          <---------ARR14(2)   <---------ARR14(2)
--->ANAC46           --------->At4g35610                    <---------MYB52(1)     ----------->ARR10
--ALFIN1             <---------At4g35610     --------->YAB1<-----------HVH21     <---------At4g35610
->RAV1(1)      --------->DAG2    <----------DOF2           <-----------TGA1   <-------TEIL        --
 
acaatgaattgaattcaaaaattgagatgaatcaaactttaaatctaaacatacttcttcatcgtcaggtctgcaaacagtttcatcagattctcttgta  678800
                                                              <---------ARR11(3)
                                                              --------->ARR11(3)
                                                             --------->RVE1(1)
                                                        --------->TOE2(3)
                                                        --------->YAB1
                                                      ------>MYB83
                                                    <---------MYB111(2)
                                                    <---------MYB46(2)
                                                   --------->ANAC58
                                                   --------->ANAC46
                                                   --------->ANAC58
                                                 --------->ANAC58
                                                 --------->ANAC58
                       <---------ANAC46          --------->ANAC46
         <---------LBD16                       --------->ANAC46                   <----------DOF2
    --------->YAB1  <----------DOF2 --------->MYB52(1)------>MYB46(1)   --------->YAB1
------->TOE2(3) --------->YAB1    <---------MYB52(2)--------->AtMYB61  <-------TEIL                -
 
ttctcaatcgtcttcggaatcatcttttgtggaggctacaaacgaataacacacaccaaacttaatatctcaaattcataaacacctttaaaaaatccct  678900
                          --------->HSFB2a(2)
                <---------MYB52(1)
                --------->DOF5.7(2)
               <-------GAMYB
             <------ZmHOX2a(2)                        --------->At4g35610
            <---------ARR11(3)                     --------->ZAT2
            --------->ARR14(2)              <---------CCA1(2)
            <---------ARR14(2)      ---------->DOF2<---------ZAT2                         <---------ARR11(3)
   <---------GLK1(2)      <---------HSFB2a(2)      --------->At4g35610         <---------At4g35610
--------->DOF2------>ZmHOX2a(2) <---------ARR11(3) <---------At4g35610      <---------At4g35610
 
aaaaaagcttctccagatcgttacctcttctccaagctctaaagctcgtttctcagcagcatcacgagctctaatcttcttctgcttctccaatttcttc  679000
                                <---------YAB1
                              <---------CCA1(2)
                   <----------DOF2            <---------ICU4                     <---------ALFIN1
      <---------At4g35610 ------>ZmHOX2a(2)   --------->YAB1         ------>ZmHOX2a(1)---------->DOF2
   <---------At4g35610  --------->ARR11(3)   <---------ATHB12<-----------GT1  --------->ANAC46
 
tcatgcttctgcttcgcatacacttttgatctcttatctttgttcttaatcatcgaaggaagtatcacattcctcttctcacccccactgaaagtagact  679100
                                                                                   <---------HSFC1(2)
                                                                                   --------->HSFB2a(1)
                                                                             --------->MYB52(1)
            --------->GLK1(2)                                               <---------SPL7
           <---------GLK1(2)                                            <---------DEAR3(1)
          --------->At4g35610                                          --------->SPL7
    ------->TEIL                   --------->YAB1                      <---------ORA47(1)
 --------->ANAC58         --------->AtMYB61                    <-----------GT1--------->SPL7
 --------->ANAC46     ------>ZmHOX2a(1)              ------->TEIL    ----------->HVH21          <---
 --------->ANAC58 <---------ARR14(2)           ------>ZmHOX2a(1)     <---------SPL7--------->HSFC1(2)
--------->LBD16   --------->ARR14(2)   <----------DOF2      <---------ICU4<------NtERF2       <-----
 
ttccacgaacatcagattccatttcctcaccatcaccatcatctttcttcctcttgaaccccatttttacgacggacggcgaacgaagcctctctctctt  679200
                <---------ZAT2
                --------->At4g35610
                --------->ZAT2
             ---------->DOF2
        --------->RAP2.6(3)                                       ----------->GT1                 --
       --------->MYB52(1)                                       <------------CBF             <------
------AHL20(2)  <---------At4g35610 *TSS    --------------------->WRI1                       <------
-----DOF2<----------ID1        --------->MYB52(1)    <-----------GT1                       <--------
 
taatcgatgaaaacggcaaagctgagaatgaagacgacggagactaacttagggtttatcgactcaaaattgaaaaacctatacaaatgggcctatgctt  679300
                                                     <---------SPL7
                                                  ------>NtERF2
                                                 --------->DEAR3(1)
                                       --------->TOE2(3)
                                 <---------AHL20(2)<------NtERF2
------->PCF2                    --------->YAB1   <---------DEAR3(1)
---ANAC58                      <---------YAB1   --------->ATERF1(1)  ------->GAMYB
---ANAC58  --------->YAB1  <----------DOF2     <-----------HVH21  --------->MYB52(1)
-YAB1<----------DOF2      --------->YAB1   <-----------GT1        <-----------GT1               ----
 
gggcccatctttaagcataggcctatctatctttataatattcgttaaaccgtcgccgtatcagtctattaacgggcttaattctgggccttgaagaaac  679400
                       <---------ARR11(3) ------->TEIL
                    <---------TOE2(3) --------->LBD16
                   <-----------GT1   <---------ANAC46
                <---------ICU4      <------NtERF2
                --------->YAB1     ------>NtERF2<---------At4g35610                               <-
        <---------ANAC58          --------->DEAR3(1)       <---------ANAC58          --------->ANAC58
        <---------ANAC58          <---------DEAR3(1)       <---------ANAC58          --------->ANAC46
        <---------ANAC46          --------->ANAC46  ------------>CBF   *TSS          --------->ANAC58
----->TOE2(3)  <---------YAB1  --------->ANAC46 --------->At4g35610   <---------MYB46(3)  --------->AtLEC2
 
attatactatggcgtttcattataacgatattaaacgacgccgtgtatgttagctatcaatttcgtttctcagtggtcactatgcgatgcgccatggaag  679500
            <---------At4g35610
            --------->ZAT2
            --------->At4g35610
            <---------ZAT2
          <-----------RAV1(2)
        <-----------HVH21
        --------->ARR14(2)
        <---------ARR14(2)                                      --------->ZAT14
      <---------SPL7                                       <---------At4g35610
     <---------ANAC46                                      --------->At4g35610
     --------->DEAR3(1)                                    <---------ZAT2
    --------->RAP2.3(1)                                    --------->ZAT14
    <-----------------------TaNAC69(2)                     <---------ZAT14                      ----
    <------NtERF2                  --------->LBD16         --------->ZAT2                       <---
   --------->ZAT18                --------->DEAR3(1)     --------->ANAC46             <----------DOF2
  --------->DEAR3(1)             <---------LBD16    <---------ARR14(2)            <---------ANAC58
 <---------ABI4(2)           <-----------HVH21      --------->ARR14(2)            <---------ANAC46
 --------->ATERF1(1)        --------->WOX13(1) <---------At5g28300       ------>ZmHOX2a(1)      <---
<---------ATERF1(1)     --------->LBD16       <-----------GT1   <---------ZAT14   <---------ANAC58
-----ZmHOX2a(1)       <---------LBD16       ----------------------->TaNAC69(2)<-----------HVH21 ----
 
aggaagcgccgtatcagctgcaatttccggtctatcaccggcgaagaattcaccgtttccacagctctgcaatgtccttctcgtcgcgtctttgtccaag  679600
                                                                          <---------ANAC46
                                                                        ------>ZmHOX2a(1)
                                                                      <---------HSFB2a(1)
                         ----------->HVH21                            <---------HSFC1(2)
                     --------->HSFC1(2)                               --------->HSFC1(2)
                     <---------HSFB2a(1)                            --------->AGP1
                     --------->HSFB2a(1)                            --------->ARR14(2)
                     <---------HSFC1(2)                             <---------ARR14(2)
                 --------->ANAC46                         <---------MYB46(3)
            <---------MYB52(1)           ----------------->AGL1     <---------GLK1(2)       <-------TEIL
           --------->LBD16               <-----------------AGL1     --------->ARR11(3)     <------ZmHOX2a(2)
----->ARR11(3)   --------->ANAC58--------->ARR14(2)  ----------->RAV1(2)==========================HOX2a_HOX2a
------ARR14(3)   --------->ANAC58<---------ARR14(2)--------->ARR14(2) ------>ZmHOX2a(2)   --------->ARR11(3)
------ARR11(3)<-------TEIL  --------->ANAC46       <---------ARR14(2)<------ZmHOX2a(2)    --------->AGP1
----->ARR14(3)--------->ZAT14------>NtERF2     <---------LBD16      <---------ARR11(3)    <---------ARR11(3)
 
accttgtctcagtccggtacacgaagcctcgacgcgaattcgataccgatttcggaacctgtggttctccagatccttcgtagaaactccatagatccat  679700
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AGI:  At4g01560.1   
Description:  MEE49 (maternal effect embryo arrest 49). similar to IMP4 [Arabidopsis thaliana] (TAIR:AT1G63780.1); similar to putative RNA processing factor 1-like [Solanum tuberosum] (GB:ABB86266.1); contains InterPro domain Brix (InterPro:IPR007109)
Range:  from: 677054    to: 679237    Orientation: Reverse
Links:  TAIR  MIPS 
 
AGI:  At4g01570.1   
Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G62910.1); similar to Pentatricopeptide repeat [Medicago truncatula] (GB:ABD33347.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66190.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885)
Range:  from: 679472    to: 681940    Orientation: Forward
Links:  TAIR  MIPS 
 
 
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