Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100           --------->ANAC58         --------->ANAC58       ---------->DOF2  --------->ZAT18                                                             --------->ANAC58 --------->ALFIN1                                                 --------->YAB1 --------ANAC58                                               --------->TOE1(3) --------ANAC46                                    --------->GLK1(1)--------->AHL20(2)              - --------ANAC58                                    --------->At4g35610        --------->ANAC46    --- ->MYB46(3)         ------->TEIL                   <---------At4g35610        --------->ANAC58   <--- ->RAV1(1)     --------->YAB1               ---------->DOF2   --------->TOE2(3)                ------   tgagtgtgccaaagcaaacatgaatcttggtactgactatttcatcaaaagagagctccataaacctaaaataaacactcacaccatgttgtctcgataa  346800            --------->AtMYB61          ------>MYB46(1)          ------>MYB83       ------>ZmHOX2a(2)                                                        <-------TEIL      <------ZmHOX2a(2)                                                        --------->CCA1(2)     <---------ARR14(2)                                                       --------->ARR14(2)     --------->ARR14(2)---------->DOF2<---------STY1(2)                       <---------ARR14(2)    <------ZmHOX2a(1) --------->CCA1(2)                                      <------ZmHOX2a(1) --------->DOF2      --------->ARR11(3)                                    <---------TOE2(3) ------>YAB1------->GAMYB  <----------ID1            <-------TEIL          <---------TOE1(3) ------YAB1--------->MYB46(3)  ----------->RAV1(1)  --------->GLK1(2)  --------->CCA1(2) --->YAB1 -------->P <---------ARR11(3)    <------ZmHOX2a(1)           <----------DOF2        <------   tgaaaaggatccaaccaaaacaagatatagcgacaacaatagctaggacatgagattcagaaaatgtcaagagatttaaggatacagtgatggcaatgcc  346900                        <---------At4g35610                        <---------ZAT2                        --------->At4g35610                        --------->ZAT2               --------->MYB52(1)   <---------ARR11(3)            --------->YAB1          --------->ARR11(3)           <------ZmHOX2a(2)  --------->ANAC58                                       --------->TOE1(3)          <---------ARR11(3)  --------->ANAC58   <---------DDF1                      --------->TOE2(3)          --------->ARR11(3)  --------->ANAC46  --------->ETT(2)            --------->YAB1         <-    <---------REM1(2)  --------->ARR14(2)       <---------ETT(2)      --------->ANAC58      --------- ---ZAT18--------->YAB1<---------ARR14(2) ------>NtERF2               --------->ANAC58      ---------   ctcgtcttcaaggatcataacagcgtagctgcaagcaagttctccgactgtcgacattgtctctgcaaaaccaagtaatcacaaaaaccataaacaacag  347000                                                                             --------->SPL7                                                                             <---------TOE1(2)                                                                           --------->TOE2(2)     --------->TOE2(3)                  ------>ZmHOX2a(1)                  <---------SPL7   <-----------ARR10                   --------->TOE2(3)                 <---------------AtSPL3  <---------CCA1(2)               --------->HSFC1(2)                 <---------ANAC58 ------TEIL       --------->ANAC58<---------HSFB2a(1)                <---------ANAC58   ---------->DOF2 >MYB52(1)--------->MYB46(3)      <---------HSFC1(2)     <-----------GT1 --------------->AtSPL3  ---- -->RAV1(1)       --------->ANAC58--------->HSFB2a(1)   --------->AHL20(2) --------->TOE1(2)  -------   attcaaatctcaacaacaacaagaaatcaaacgagaaatttcctaaatagccactaaatttactaatatatgcttatcgtacgagcacaataaatccgaa  347100                                                       ----------->GT1                                                      <---------HSFB2a(2)                                                      --------->HSFB2a(2)                 <---------At4g35610                                                     ----------->GT1                *TSS  --------->At4g35610        --------->GLK1(1)                            ------>ZmHOX2a(2)              <---------HSFC1(2)        <---------GLK1(1)                          --------->ARR14(2)               --------->HSFC1(2) <------MYB83                                      <---------ARR14(2)        --------->ICU4 <------MYB46(1)                 --------->ALFIN1 <------ZmHOX2a(1)       <---------YAB1<---------DEAR3(1) ----->ATHB12               <---------MYB52(1)  <---------TOE2(3)--------->TOE2(3) ------->TEIL -->LBD16--------->GLK1(2) <----------DOF2--------->ICU4      --------->RVE1(1) <---------YAB1   gattggtgagaaatctgtaacgaataagcctttaggtgttggaaatgtttgaggatcgagaaaaatacctcagactacgattatgaagcttcggctcaaa  347200                                                                  <<<<<<<<<<<<<<<<<LFY                                 --------->LBD16                  >>>>>>>>>>>>>>>>>LFY               <---------YAB1   <---------HSFB2a(2)          ---------->DOF2             --------->YAB1     --------->HSFB2a(2)      --------->TOE2(3)            <---------YAB1     <---------LBD16       --------->YAB1         <---------ANAC46 ------>MYB83               --------->KAN4(2)        <------NtERF2     ------>MYB46(1)           --------->KAN4(1)      <---------DEAR3(1)--------->TOE2(3)           <---------KAN4(1)   <---------AtMYB61    <---------MYB59            <---------KAN4(2) <----------DOF2     <-----------GT1   <------------CBF<---------YAB1<------------CBF   tttctttggtggcgatgataaataaacctaatctccagaaatattgggctgggaataatccttgaaaggcccattggaaacttttcacttatatacaatt  347300                                                                                                 <---                                                                                                 ----                                                                                                 ----                                                                                                 <---                                                                                                 <---                                                                                                 ----                                                                                                 <---                                                                                                 ----                                                                                                -----                                                                                                -----                                                             <---------WRKY18(1)                <----                                                            --------->WRKY12            =============                                                            --------->WRKY38(1)    ----------->GT1                                              --------->At4g35610            <-------GAMYB      <----                                              <---------At4g35610            ========================                                <---------REM1(1)           --------->WRKY45----------->GT1     <----                               <---------TOE2(3)      --------->ALFIN1   <---------WRKY18(1)    <----     --------->YAB1--------->DAG2           <-----------RAV1(2)    <---------ARR11(3)   ---------->DOF2  <----------DOF2 ---------->DOF2     <------ZmHOX2a(1)  <---------MYB46(3) <---------ZAT6      <----   gggcctttgataaacaaaaaaaaagtagggtttgatgtaaggaagcccagatgagagtgttgttgaccagatgtttgactgttaaatgtaaaaaggccac  347400                                                                                       --------->ANAC46                                                                                       --------->ANAC58                                                                                       --------->ANAC58                                                                                     --------->ZAT6                                                                              ------->MYC4      <---------MYB46(3)                                                      ------->PIF5      <---------REM1(1)                                                       <-------PIF5 ----MYC3                                                                     ------->MYC3 --->MYC3                                                                     ------->MYC2 --->MYC2                                                                     <-------PIF4 ----MYC4                                                                     ------->PIF4 ----MYC2                                                                     <-------MYC3 --->MYC4                                                                     <-------MYC2 ----PIF5                                                                    <---------TGA1a --->PIF5                                                                    --------->TGA1a ---->TGA1a                               ------->TEIL                       --------->ANAC58 ---->O2                               --------->AtLEC2                      --------->ANAC58 -----ANAC55(2)              --------->ALFIN1                                --------->ANAC46 =====bZIP_DOF             <---------ANAC58                                  --------->ANAC55(2) -----TGA1a                <---------ANAC58----------->RAV1(2)               <---------ANAC55(2) =====MYC_MYB              <---------ANAC46<---------At4g35610              ------->TEIL -----ANAC46  ----------->ARR10     <---------ATHB12                       <------------OsbHLH66 -----O2      --------->ANAC58    --------->WOX13(1)                     --------->AtLEC2 ----ABF1     --------->ANAC58  --------->PCF5               ----------->HVH21<-------MYC4   gtgtatggttgtagggaagaaatggactaccgtggtccatcatgcacctgatgatgtctctgtctgactggctccatgcacgtgataacacgagacttca  347500                                                       ---------->DOF2                                                    --------->ANAC58                      --------------->AGL15         --------->ANAC58                      <----------DOF2   <---------AHL20(2)                                      -----                      <---------------AGL15       <---------ATHB12                     --------->ATHB12            <---------AHL20(2)          --------->ATHB12          --------->At4g35610  -------->ATHB1            <---------AHL20(1)         <---------AHL20(2)      ---------->DOF2         <---------ICU4            --------->AHL20(2)   ----------->GT1  ---------->DOF2 <---------At4g35610 <---------ATHB12   ccagttcgttttaaaaaatttcttctttttttagtttgttatttattggccaataagcaaagcttgaaagctgtcattttcgacttaaatcattggtctg  347600                             <---------GLK1(1)                             --------->GLK1(1)                            --------->ARR11(3)                          <---------YAB1                               --------->ANAC58                        <---------ICU4                       <--------ATHB1                        --------->YAB1                       --------->ATHB51                       --------->ICU4                        --------->ATHB12                 --------->AHL20(1)                         <---------ATHB51                --------->AHL20(2)             ----------->GT1         --------->ANAC46        ------             <---------AHL20(2)               <---------TOE1(3)        --------->ANAC58        <-----             <---------ICU4--------->YAB1     <---------TOE2(3)<---------WOX13(1)      <-----------GT1      ----------->GT1--------->YAB1         ------>ZmHOX2a(1)<---------ICU4      ----------->GT1<----     <---------YAB1 <---------YAB1   <----------DOF2        <---------AHL20(2)   <---------MYB46(3) ------>GT1 --------->AHL20(2)       <---------DAG2---------->DOF2     --------->ANAC55(2)<----------DOF2   gtttaatatgcttaataaatatatgataatgatatccagctttttcctaaggtaaaagatgaataattggtttacgcattcgatggtttaaactttatta  347700  Previous    Next  AGI:  At4g00810.1    Description:  60S acidic ribosomal protein P1 (RPP1B). Identical to 60S acidic ribosomal protein P1-2 (RPP1B) [Arabidopsis Thaliana] (GB:O23095;GB:Q9ASX0); similar to 60S acidic ribosomal protein P1 (RPP1C) [Arabidopsis thaliana] (TAIR:AT5G47700.2); similar to 60S acidic ribosomal protein P1 (RPP1C) [Arabidopsis thaliana] (TAIR:AT5G47700.1); similar to acidic ribosomal protein P1a-like [Solanum tuberosum] (GB:ABB29934.1); contains InterPro domain Ribosomal protein 60S; (InterPro:IPR001813) Range:  from: 345952    to: 347184    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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