Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                   --------->TOE2(3)              <-----------GT1           --------->ANAC58           --------->ANAC58        --------->ALFIN1         ---------->DOF2         <---------ANAC58      <------NtERF2        <---------TOE1(3)            --------->CCA1(2)    <---------DEAR3(1)     <---------TOE2(3) --------->AtLEC2                 --------->GLK1(1) ---------->AGL1 <---------DAG2  <---------ANAC58<---------At4g35610       --------->LBD16          <   aaatcggaggcgaaagtaaccttttttctaaggtagagtggcgaaacatgcagaagagagacgagaagaagagaacccagaaatcaaatcgaaggaaatg  21059100                          --------->YAB1                       --------->WOX13(1)                 <---------REM1(1)               <-------GAMYB              <---------DEAR3(1)                     <---------At4g35610                  <---------GLK1(1)           --------->ANAC46                      --------->AtLEC2               <---------------AGL15          <---------At5g28300                  <---------AtLEC2                 --------------->AGL15          <---------LBD16<---------ATHB12      <---------ANAC58                <-----------------AGL3         --------->MYB52(1)  ---------->DOF2   <---------ANAC58             <---------ARR14(2) ------NtERF2 <---------ANAC46             --------->GLK1(1)                --------->ARR14(2)  -----   gcagagagaaatcacggcgttgtagcaatcagaaagagtcttgggaattgcatgcagcatcgaaggctatcaaatgcagatactaaacatggaaatcgca  21059200                                   --------->HSFB2a(2)                                <----------DOF2                    <---------ANAC58                                           ----------->RAV1(1)                    <---------ANAC46                                        --------->ANAC58          --------->YAB1           <---------HSFB2a(2)                      --------->ANAC46         <---------ATHB12       <---------DAG2                              --------->ANAC58         <<<<<<<<<ARR2          <----------DOF2    --------->WOX13(1)      --------->DAG2    --------       --------->WOX13(1) <-------TEIL            <---------AHL20(2)      ---------->DOF2    <-------    <------ZmHOX2a(1) <---------------AtSPL8>>>>>>>>>TBF1       --------->ANAC58   --------->GLK1(2) ------>RAV1(1)     <---------ANAC58     >>>>>>>>>TBF1          --------->ANAC58 --------->MYB46(3)--   acacaaggacaatcaaactcttgcgaggtacagacttttcgaagaagaagaataaatcaaaaacttaagcaagagaaaaagcaacaatcttttggagctt  21059300           ------>ZmHOX2a(2)          <------ZmHOX2a(2)         --------->ARR14(2)         --------->AGP1         <---------AGP1         <---------ARR14(2)         --------->ARR11(3)         <---------ARR11(3)        <---------CCA1(2)                                                                      ------   ===============HOX2a_HOX2a                                                                  <-----   <------ZmHOX2a(1)                                                  <---------ZAT14          ------   ==============HOX2a_HOX2a                 ---------->DOF2  <---------YAB1            --------->ANAC58  <----------ID1                          <---------------AGL15  <---------YAB1    <-----------GT1 ->At4g35610                              --------------->AGL15--------->YAB1   --------->ARR14(2) --At4g35610                          <----------DOF2 --------->ANAC58--------->ZAT14   --------->ANAC58 -------->DOF2                     <-----------GT1    --------->ANAC58--------->ZAT18 ---------->DOF2   aaaaaggaccagatctaaaacatggcaagtttgggtttttctttctcaaaagagaaacgaaactatgataagtgcagagacagatttacaaagcaaacct  21059400                                                              <------ZmHOX2a(1)                                                             ----------->GT1                                                         <------ZmHOX2a(1)                        ---                                                      <-----------RAV1(2)                      *TSS--                                                     --------->LBD16                       --------->ATHB12 --->TOE1(3)                                        --------->ANAC46                      <---------YAB1 ----MYB59                                         <---------LBD16---------->DOF2     <---------DAG2 --->TOE2(3)                             <---------MYB52(1) ----------->GT1  ----------->GT1 <-------   aaactctgtgtctgtgtgtgtctgagtctctctctctctcttcgttttgttttcgcgcaggagaggaaaaaagagaagagagagaaaaccttttgattga  21059500                                                                    <----------DOF2                                                                    ==============================MADS_MADS                                                           <---------ANAC58       <---------------AGL15                                                           <---------ANAC58      ----------------->AGL2                                           ------>ZmHOX2a(1)  --------->ARR14(2) <-----------------AGL3  ----------->HVH21         <---------ALFIN1         <---------YAB1 --------------->AGL15 ------->DOF2              ------>NtERF2 ----------->RAV1(2)  <---------ARR14(2) ----------------->AGL3 ------->DAG2      ------------>CBF --------->ANAC58 ------------>CBF      --------->MYB52(2) --WOX13(1)    <-----------RAV1(1)  --------->ANAC58<-----------GT1 <---------------AGL15   gaaagtgacactcgatactgtggcaatgcccccctctcaagcctcctgtggaattttcaatgcgtttcttctttttttagttgcccaaaaatggtttctc  21059600                                                     <---------WOX13(1)                                                   --------->ATHB12                                              <---------YAB1                                            <---------ICU4                                            -------->HAHB4                                            --------->YAB1                                <-------MYC3                                            --------->ATHB12                              <-------MYC2                                           <---------YAB1                                 ------->MYC2                                           <---------ATHB12                               ------->MYC3                                           --------->ICU4                                 ------->MYC4                                      <---------ANAC55(2)                         --------->ZAT6        --------->YAB1                --------->ANAC55(1)                       <-----------GT1    --       <------ZmHOX2a(2)              --------->ANAC55(2)--------->TOE2(3)     --------->YAB1      <-   aaactttcgatcaaaataagaaacagaggtttgtttaaacacttaatgattagtgattaacttaaatgaaggtggaatcaataaacactacatgtgctcg  21059700                                                                 ----------->GT1                                    <-------TEIL                --------->DAG2                                   <--------P <---------YAB1  ---------->DOF2                                --------->MYB59     <----------DOF2 ------->GLK1(1)                <---------TOE2(3)   --------->TOE2(3) --------GLK1(1)        --------->YAB1 <---------WOX13(1) --------->YAB1     <-------TEIL  <---------   gagacccttcattcatttagcttcaatgggaatttaggtagattgattatcaaactttaatcagaaaaggttatacatatacatgtttatgttctttggc  21059800                                                                       ----------->GT1                                                                       <---------YAB1            <---                                                                     <---------ICU4          --------                                        <--------P<---------YAB1     --------->YAB1          --------                                 --------->AHL20(2)                 --------->ICU4           <-------                                 <---------AHL20(2)                 <---------ATHB12         <-------                               <----------DOF2 --------->ICU4     --------->WOX13(1)         <-------                               --------------->AGL15      <---------AHL20(2)                <--------                               <---------------AGL15      --------->AHL20(2)                ---------                              ----------------->AGL2     --------->AHL20(2)    --------------->AGL15   --------->ZAT6             <-----------------AGL3  --------->AHL20(2)    <-----------GT1 <-------- -DOF2      ------>ZmHOX2a(1) =================================================================MADS_MADS   tctcaacactaatcctcatgcctatgagtttctctttaaatggtaagtgattactataaattaatctgcaatcatgttaaaccatttttaggcaataatt  21059900    ------->TEIL --------GT1                             <-----------GT1 ->ATHB51                           --------->YAB1 ->AHL20(2)                        <---------AHL20(2) -ATHB1                            --------->AHL20(2) --AHL20(2)                      <----------DOF2                                           <---------ANAC58 --ICU4               <---------GLK1(1)--------->YAB1                         ------->TEIL <---------ANAC46 -ATHB12        --------->ICU4  --------->TOE2(3)               --------->ARR14(2)         <---------ANAC58 >ICU4 <---------AHL20(2)--------->TOE2(3)  <----------DOF2     <---------ARR14(2)    <-----------RAV1(1) -ATHB51   <-----------GT1      --------->TOE1(3)   <-----------GT1           <---------YAB1<--------   tacatgtatttttttgcaatattgaaatctcaaacctttaattatactttctattatccaatctcagattgggttttatgaacattgaatgtggctttga  21060000  Previous    Next  AGI:  At3g56850.1    Description:  AREB3 (ABA-RESPONSIVE ELEMENT BINDING PROTEIN 3); DNA binding / transcription activator/ transcription factor. similar to EEL (ENHANCED EM LEVEL), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT2G41070.2); similar to EEL (ENHANCED EM LEVEL), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT2G41070.1); similar to EEL (ENHANCED EM LEVEL), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT2G41070.3); similar to bZIP transcription factor [Malus x domestica] (GB:AAX11392.1); contains InterPro domain cAMP response element binding (CREB) protein; (InterPro:IPR001630); contains InterPro domain bZIP Range:  from: 21057320    to: 21059495    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g56860.1    Description:  UBA2A; RNA binding. similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT2G41060.2); similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT2G41060.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN72884.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 21059868    to: 21063216    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version