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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
Go to graphical and table display
1 10 20 30 40 50 60 70 80 90 100
<------
ZmHOX2a(1)
--------->
AHL20(1)
<---------
AHL20(2)
--------->
AHL20(2)
<---------
AHL20(2)
--------->
AHL20(2)
--------->
YAB1
------>
MYB83
------>
MYB46(1)
<---------
YAB1
<---------
MYB46(2)
------>
MYB83
--------->
AHL20(2)
<-----------
GT1
>>>>>>>>>>
MYB80
<---------
AHL20(2)
--------->
AHL20(2)
--------------->
AtSPL8
------------------------>
ANAC81
<---------
AHL20(1)
------>
MYB46(1)
--------->
ZAT14
--------->
AHL20(2)
---------->
DOF2
<---------
TOE2(3)
<---------------
AtSPL8
<---------
AHL20(2)
--------->
AHL20(2)
<---------
TOE2(3)
<---------
MYB59
<---------
ZAT14
attttgaatttaaattcaaaccaaacaaaaaaaatcaaagttttattaatattttaggattaaataccaaactctgaatttgagtactaaactgtttatc
20969200
--------->
YAB1
<---------
O2
--------->
TGA1a
<---------
TGA1a
--------->
ANAC55(1)
--------->
ANAC55(2)
--------->
ANAC58
------->
TEIL
--------->
ANAC58
<---------
ANAC55(1)
<---------
ANAC55(2)
<---------
ANAC58
--------->
O2
--------->
ANAC55(2)
<-----------
TGA1
<---------
ANAC55(2)
<-----------
HVH21
<-------
TEIL
<---------
YAB1
<---------
ANAC58
<----------
DOF2
--------->
CCA1(2)
--------->
YAB1
<---------
TOE2(3)
===================
bZIP_DOF
<---------
ATHB12
<-----------
GT1
<-----------
GT1
------->
TEIL
ccaatgataaatgttttgttttagatactattttacgtatcaaaagttttttttcttttcgtcacgtatcagaagattcaaaactaaaccaaaattcgga
20969300
-
-------
-------
--------->
ARR14(2)
<------
<---------
AHL20(2)
<---------
ICU4
<---------
ARR14(2)
<-------
--------->
ZAT6
<---------
YAB1
<---------
ANAC46
--------->
YAB1
ttgaacactcttaaatttgtatgcatattatcgctaaactcattacaaaaatgaaatggagtatttgtatgtgatgcatagattactagtttgataatgt
20969400
--------->
LBD16
--------->
AHL20(2)
<---------
ICU4
--------->
AHL20(2)
---------->
DOF2
----------->
TBP
<---------
AHL20(2)
----------->
ARR10
<---------
AHL20(2)
--------->
DOF2
<---------
AHL20(2)
--------->
AHL20(2)
--------->
GLK1(2)
<---------
AHL20(2)
-->
ICU4
<-------
TEIL
--------->
AHL20(2)
--------->
ALFIN1
<---------
MYB52(1)
--------->
AHL20(2)
---->
GT1
<---------
ARR14(2)
--------->
ANAC46
--------->
YAB1
<---------
TOE1(3)
----
---
YAB1
--------->
ARR14(2)
--------->
LBD16
--------->
WOX13(1)
<-----------
RAV1(2)
<---
--
TOE2(3)
--------->
CCA1(2)
<---------
LBD16
------------>
CBF
<-----------
GT1
--------->
AHL20(2)
ttaaaagggaagatacaaaacatataaataatttccccgtaattaaagtgtggcaattagaagctgttatccaaattacttcaggtttatttaattttca
20969500
----------->
HVH21
<---------
SPL7
--------->
YAB1
--------->
LBD16
<---------
YAB1
<---------
At4g35610
<---------
ANAC55(2)
<---------
MYB52(1)
<--------
------------>
CBF
--------->
ANAC55(2)
<-------
GAMYB
--------->
At4g35610
--------->
TOE2(3)
<-----------
GT1
<---------
MYB46(3)
--------->
SPL7
----------->
GT1
<<<<<<<<<
MYB98
<------
NtERF2
<---------
LBD16
----->
At4g35610
<---------
TOE2(2)
------>
NtERF2
----------->
HVH21
------
At4g35610
<---------
TOE1(2)
<----------
DOF2
--------->
DEAR3(1)
--------->
MYB46(3)
gatggaagggtattttcgtcaatactcttcgtatgttactgaacatcataaaccctttattcatttatcgccgtcgttgtctctctcaccggacgttgtt
20969600
--------->
YAB1
<---------
ICU4
------>
NtERF2
--------->
ARR14(3)
--------->
AHL20(2)
--------->
LBD16
<---------
ARR14(3)
<---------
AHL20(2)
<---------
DEAR3(1)
<---------
ATHB12
<---------
ATHB12
--------->
SPL7
<---------
ARR11(3)
--------->
WOX13(1)
<---------
LBD16
--------->
ARR11(3)
--------->
ZAT14
<----------
DOF2
----
<-----------
GT1
--------->
GLK1(1)
<----------
DOF2
--------->
TOE2(3)
<---
-
MYB52(1)
<---------
At4g35610
<---------
GLK1(2)
<---------
WRKY38(1)
<-----------
GT1
ttgtttccctccggcgatttcatcggagaccttcactc
atggccacaag
gttctctctcgctctatagtcaatgaatagaacctttaattttaccttgtt
20969700
<---------
WOX13(1)
<---------
ANAC58
<---------
ANAC58
<---------
MYB46(3)
--------->
ATHB12
--------->
WRKY38(1)
<-------
GAMYB
<---------
ANAC46
<---------
DEAR3(1)
--------->
MYB52(1)
<---------
DOF5.7(2)
<---------
MYB52(2)
--
--------->
At4g35610
---
<---------
At4g35610
<---
<---------
CCA1(2)
--------->
ANAC58
<----
----->
AHL20(2)
--------->
ANAC58
--------->
At4g35610
------
------
AHL20(2)
<------
ZmHOX2a(1)
--------->
CCA1(2)
------->
GAMYB
<---------
At4g35610
<-----
taatttctcgtctctcgcattgttagtag
gagattaagagcattcaagagatggatgcaagctaacggcgttgattgcagcgaagctctcaacctcgtcg
20969800
---->
NtERF2
------>
DEAR3(1)
<---------
ARR11(3)
------------------
WRI1
<---------
ARR11(3)
<---------
ANAC58
-----
ATERF1(1)
--------->
ARR11(3)
<---------
ANAC58
--->
DEAR3(1)
<---------------------
WRI1
<---------
CCA1(2)
---------->
ID1
-
----
DEAR3(1)
<-----------
HVH21
<------
ZmHOX2a(1)
--------->
ARR11(3)
--------->
YAB1
acgacgaaaacgatggtgtctctgtgagagcattctgcgatttgaaggaaggagatgttgttgccaatatctcaaaaactgcttgtctcactatcaaaac
20969900
--------->
At4g35610
------->
TEIL
--------->
ARR14(2)
--------->
GLK1(2)
<---------
ARR11(1)
<---------
ARR14(2)
<----------
<---------
YAB1
--------->
GLK1(2)
<---------
At4g35610
--------->
ARR14(2)
--------->
At4g35610
<---------
GLK1(2)
<---------
At4g35610
<---------
At4g35610
<---------
HSFC1(2)
<---------
ZAT2
<---------
ARR14(1)
<-----------
RAV1(1)
--------->
HSFC1(2)
-------->
ALFIN1
------>
ZmHOX2a(2)
--------->
MYB59
--------->
GLK1(2)
cagtggagctcgtgagatgatcgaatctgctgatttagatggaagtttaggtctctctgtggctctcatgtacgagagaagcttaggtgaagaatctcct
20970000
--------->
CCA1(2)
------>
ZmHOX2a(1)
<------
MYB83
<---------------
AGL15
<---------
AtMYB61
<---
--------->
GLK1(2)
<---------
ARR11(3)
--------->
HSFB2a(2)
<---------
GLK1(2)
--------->
ARR11(1)
<---------
HSFB2a(2)
--------->
ARR14(2)
--------->
ARR11(3)
<---------
LBD16
----
<---------
ARR11(3)
<---------
ARR14(2)
<---------
CCA1(2)
<---
<------
MYB83
<---------
ARR14(2)
--------->
ARR14(2)
--------->
GLK1(2)
<-------
TEIL
<------
MYB46(1)
===============================================================================
<---------
MYB46(3)
--------------->
AGL15
--------->
MYB59
<---------
GLK1(2)
<---------
At4g35610
-
ARR10
--------->
ARR11(3)
----------->
ARR10
<------
MYB46(1)
----------->
ARR10
--------->
At4g35610
tgggctggttatcttcagattcttcctattcaagaagatttgcctcttgtttggtctcttgaagacttagattctctcttatctggaactgagcttcata
20970100
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AGI:
At3g56570.1
Description:
SET domain-containing protein. similar to ribulose-1,5 bisphosphate carboxylase oxygenase large subunit N-methyltransferase, putative [Arabidopsis thaliana] (TAIR:AT1G14030.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67091.1); contains InterPro domain RuBisCO-cytochrome methylase, RMS1 (InterPro:IPR011383); contains InterPro domain SET; (InterPro:IPR001214)
Range:
from: 20969639
to: 20972116
Orientation: Forward
Links:
TAIR
MIPS
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publications
when using AthaMap.
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