Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100            --------->ANAC58          --------->ANAC58          --------->ANAC46       <------ZmHOX2a(2)    <---------MYB46(3)   --------->ALFIN1 -------->MYB55(2) ---------MYB46(3)                                                         ----------->GT1 ------->ALFIN1             --------->ALFIN1                              --------->ALFIN1 ----->ALFIN1               <---------ZAT6                             --------->DAG2 --------RAV1(1)  --------->ANAC55(2)        <-----------HVH21        ---------->DOF2               < ----ANAC46     --------->ANAC58<---------DOF5.7(2)                 <---------AHL20(2)            --- ----ANAC58     --------->ANAC58<---------At5g28300          <---------HSFB2a(2)           <--------- ----ANAC58   <---------ALFIN1 <-----------GT1    <---------GLK1(2) --------->AHL20(2) <----------DOF2   tgtgggtggatcacgcacacgcgtattgaagtgttaccgtcttaatcggtcagaattttgagtcgagaaattaaaagtggtgaattcttcttttaactcc  20786900                                                                        <---------AHL20(2)                                                                        --------->AHL20(2)                                                                     <---------ICU4                                                                     --------->AHL20(2)                                                                     <---------AHL20(2)                                                                     <--------ATHB1                                                   <---------YAB1    --------->ATHB51                          --------->ANAC58       <--------HAHB4     --------->ICU4                          --------->ANAC58       -------->ATHB1     <---------ATHB51                          --------->ANAC46       <---------ICU4     <---------ATHB12                         --------->DEAR3(1)      --------->ATHB12 ------>MYB46(1)             ------- ---------ALFIN1      <---------ALFIN1           --------->ATHB51 ------>MYB83              <-------- ------>ANAC46<---------At5g28300     --------->TOE2(3)         <---------MYB59       --------->YAB1 --GT1       <-----------GT1<---------ALFIN1    --------->ICU4  --------->TOE2(3) --------->MYB46(3)   ccccaactacaaaatttaccatttccacccccaactatttccataatcgaattattagacttcaaacctaataatttaaaacgaacaaacatattttctt  20787000             <---------AHL20(2)            <---------AHL20(2)                     --------->YAB1   <---------ANAC46     ----------->GT1                      ---------->DOF2           <---------ANAC58                <  ---------->DOF2  --------->YAB1    <---------------AGL15          <---------ANAC58            ----- -->TOE2(3) --------->AHL20(2)       --------------->AGL15 --------->At4g35610             <---------At4g35610 -AHL20(2)--------->GLK1(2)       <---------WRKY18(1)      <---------At4g35610             --------->At4g35610   aaatgaaaggagaatttaatagcataatcaattgtttgaccaaaaaaagagaagcataatcagctgttttccttgtatacgagtagaagagtcagcacaa  20787100                                                                      <---------------------WRI1                                                                 <---------ARR14(2)                                   <---------DAG2          <---------ARR14(2)                          <------MYB83                     --------->ARR14(2) ----------->RAV1(1)      <------MYB46(1)  <----------DOF2--------->GLK1(1)  <----------ID1 ----------ID1           --------->MYB59  >>>>>>>>>>>>WRKY18 ----------------->AG---------->DOF2   -- ----->DOF2    <----------DOF2  <-----------GT1   <---------MYB59--------->ARR14(2)  ---------->DOF2   gagcgacaatggctcacctttgaaagtttggtttcaaccttttgacttttgacctaaaacatatccatattcgtcaagaagaacaaagaaagtattccaa  20787200                                                             <---------HSFC1(2)         --------->YAB1                                      <---------HSFB2a(1)         --------->AHL20(2)                                  --------->HSFC1(2)                    --      --------->YAB1                                         <---------At4g35610                   <-     <---------AHL20(2)                 ---------->DOF2      --------->HSFB2a(1)                   <-     <---------YAB1              --------->AHL20(1)          <---------ZAT2                --------->ANAC58    --------->AHL20(1)           --------->AHL20(2)          --------->At4g35610         ---------->DOF2    <---------AHL20(1)      >>>>>>>>>>GT-3b                  --------->ZAT2    --------->ATHB12 <----    --------->AHL20(2)   --------->ANAC58     <------ZmHOX2a(1)           ------>ZmHOX2a(1)--------->ANAC58 --------->AHL20(2)      --------->ANAC58    ----------->GT1 <------NtERF2*TSS <---------ICU4   ----- ------->AHL20(2)---------->DOF2 <---------AHL20(2)---------->DOF2 ------>ZmHOX2a(1) ---------->DOF2<   aaaaaatataataaaaaaaaaaagaccaagaaaaataaaatggaaagaggaaacaaagaaggcagcttcctctctccttcttcattgcaaagaaagcacc  20787300         --------->ARR14(2)         <---------ARR14(2)                     ----------->RAV1(1)         --------->GLK1(2)                     --------->ANAC46                        --------->WOX13(1)    ---------->DOF2  --------->ANAC58        --------->AtMYB61                    ------>MYB46(1) ------------->AGL15 --------->ANAC58        <---------ALFIN1                     ------>MYB83 --------DAG2      --------->ZAT6           --------->MYB46(3)                  <---------MYB111(2) --------------AGL15 --------->ANAC46      ------>MYB83                         <---------MYB111(1) -----ALFIN1 ------>ZmHOX2a(1)             ------>MYB46(1)                --------->YAB1  --------->YAB1 ---->DEAR3(1)     <---------ALFIN1       --------->ANAC46                <---------ICU4 <---------ATHB12 ----------DOF2 ------>ZmHOX2a(1)        --------->MYB46(3)<---------ALFIN1     <---------MYB46(2)   accttttaaagaatcctcctcacactccattcttcttaaaaaacccaccacaacacaattcccacttgtttcttcatcatcacctacttcaatcaaaaaa  20787400                                      <----------DOF2                                  --------->ZAT18                                  <---------ZAT18                              --------------->AtSPL8                                      <----------DOF2                          --------->LBD16                                  <---------ANAC58                          <---------TOE1(2)      ------->TEIL              <---------ANAC58      <---      <----------DOF2    <-----------RAV1(2)    <---------CCA1(2)          <---------ANAC46      <---   cattccaactttcttctcaatttcattccaggtttgtgccctttcttcttgaatcttcttctatggaacttccaatttcgtctacttatgggcttaattt  20787500                                 <---------CCA1(2)                   --------->HSFB2a(2)                   <---------HSFB2a(2)                   --------->HSFC1(1)                   <---------HSFC1(1)                                          <----------DOF2             <---------------AGL15                       --------->GLK1(2)   <---------YAB1<---------ANAC58             --------------->AGL15           <---------ANAC58          --------->ATHB12    <---------ANAC58            <-----------------AGL3           <---------ANAC58       <---------ANAC58       <---------ANAC46 ---MYB46(1)----------------->AGL2           <---------ANAC46       <---------ANAC58<---------ANAC58 ---MYB83   <-----------------AGL2         --------->GLK1(2)      --------->GLK1(2) <---------ANAC58   ggtttacaagtcttgctatttctagaaaactcgtcttatcttgagtttcttggacagaaattcttgagtttcttgatttatctttgacttgtttcttgaa  20787600                                                           <---------ANAC58                                                           <---------ANAC46                      ----                                                       <---------MYB52(1)                       -----                                                      <-------GAMYB                             -----                  <-------GAMYB                      --------->MYB55(2)                        <-----                <---------YAB1                       --------->MYB52(2)                      <-------                <---------TOE2(3)                    <---------MYB46(3)                      --------     ----------->GT1 <------MYB46(1)               <-----------HVH21                <---------DAG2     <----------ID1  <------MYB83           ----------->ARR10                       <----------DOF2    ----------->GT1<--------P     ------->GAMYB--------->MYB52(1)       ---------->DOF2     <--------  ---------->DOF2<---------MYB46(3)      ----------->GT1   <---------ANAC58      <-----------GT1-----   aaaaaaaaggaaaaaattttggttggaatatttcaacggagaagagtagaaacggtcgttggcttgtcttagtagaaagtagtttactttttttatatcc  20787700        <---------RAP2.3(1)       <---------RAP2.6(2)       <---------ANAC58       <---------ANAC58       <---------RAP2.3(2)       <---------ANAC46      --------->RAP2.6(3)      <---------LBD16  <---------ICU4 --------->ICU4 ----->LBD16                                                             <---------AHL20(2) ---->ANAC58               <---------At4g35610                        <---------ICU4 ---->ANAC46               --------->At4g35610                       --------->ICU4 ----LBD16               <-----------RAV1(2)                ---------->DOF2 --ARR14(2)          <---------At4g35610          ----------->GT1  --------->AHL20(2) ->ARR14(2)          --------->At4g35610          <---------------AtSPL8 --------->AHL20(2)     ----- -CCA1(2)        --------->GLK1(2)               --------->DAG2    --------->YAB1 <---------MYB52(1) ---->ANAC58    <---------GLK1(2)               ---------->DOF2 --------->YAB1   <-----------HVH21  -   gcaaaaattgcggcttcaaattctgcttcagaagactcttagaaaatggaaaaagttacaaacaaagaataatatttattttctgtcagtttttctgatc  20787800  Previous    Next  AGI:  At3g55980.1    Description:  zinc finger (CCCH-type) family protein. similar to CZF1/ZFAR1 [Arabidopsis thaliana] (TAIR:AT2G40140.2); similar to CZF1/ZFAR1, transcription factor [Arabidopsis thaliana] (TAIR:AT2G40140.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN68018.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571); contains InterPro domain Ankyrin (InterPro:IPR002110) Range:  from: 20787274    to: 20789821    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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