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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
--------->
GLK1(1)
--------->
ARR11(3)
<---------
ARR11(3)
<---------
ARR14(2)
--------->
AHL20(1)
--------->
ARR14(2)
--------->
ARR11(3)
--------->
AGP1
<---------
AHL20(1)
<---------
AGP1
<---------------
AtSPL8
<---------
ARR11(3)
<---------
At4g35610
<------
ZmHOX2a(1)
---------->
DOF2
--------->
At4g35610
=========================
HOX2a_HOX2a
<-----------
HVH21
<------
ZmHOX2a(1)
----------->
RAV1(2)
<------
MYB46(1)
===============================
HOX2a_HOX2a
<------
MYB83
--------->
MYB52(1)
---------->
DOF2
<---------
ARR11(3)
<----------
--------->
MYB59
--------->
YAB1
<---------
AHL20(2)
---------->
DOF2
----------->
GT1
---------->
DOF2
<---------
CCA1(2)
<---------
ATHB12
<---------
TOE2(3)
------>
ZmHOX2a(2)
---------
ggggaaagaagtttggtcagatctcaataacgagagccaatgtttaatcaaaggatgaggatgtacaaagac
ctgatccaaaggaaaatatttcacacta
19974500
------------------------>
ANAC81
-------->
P
<---------
AHL20(2)
--------->
MYB52(1)
<---------
AHL20(2)
--------->
At4g35610
=
-
GT1
--------->
AHL20(2)
---------->
DOF2
<---------
At4g35610
----------->
GT1
>
ZAT6
--------->
AHL20(2)
---------->
DOF2
<-----------
HVH21
--------->
ZAT14
<-----------
HVH21
-
attcaaattaaattcagagagaattcaaagaaagagaagaagagagcgtcatcgggctac
cagcatactattggtagaggtcatagacgatgttaaactc
19974600
<---------
O2
<---------
ANAC58
<---------
ANAC55(2)
<---------
ANAC58
--------->
ANAC55(2)
>>>>>>>>>
TBF1
--------->
YAB1
<-------
TEIL
<----------
ID1
--------->
WOX13(1)
<-----
--------->
AHL20(2)
<------
ZmHOX2a(1)
--------->
MYB46(3)
------
--------->
ZAT18
<------
NtERF2
--------->
SPL7
------>
MYB46(1)
------
<---------
ZAT18
<---------
HSFB2a(2)
>>>>>>>>>
TBF1
--------->
GLK1(2)
--------->
GLK1(1)
====================================
HOX2a_HOX2a
------>
MYB83
--------->
LBD16
<---------
GLK1(1)
----->
ZmHOX2a(2)
<---------
ANAC46
<------
ZmHOX2a(1)
--------->
MYB46(3)
--------->
AHL20(2)
<-----
gatcgcactaaaatacgtggccgagaagtagaggaggacgacgaagaagaagaaccaacaat
ctatcatccgaaaaataaaaacacacagagaaatcagc
19974700
<---------
O2
<---------
ANAC58
--------->
TGA1a
<---------
ANAC58
------->
MYC2
------->
MYC3
<-------
MYC3
<-------
MYC2
<---------
TGA1a
--------->
TGA1a
--------->
ANAC58
--------->
ANAC58
------->
TEIL
--------->
ANAC58
--------->
ANAC58
--------->
PCF2
<---------
ZAT18
--------->
ZAT18
----------------->
AGL1
--------->
ALFIN1
<-------
TEIL
<-----------------
AG
----
At4g35610
--------->
O2
------->
TEIL
------->
GAMYB
-
--->
At4g35610
<---------
TGA1a
--------------->
AtSPL8
--------->
MYB46(3)
-
--->
ZAT2
<---------
ALFIN1
<---------
WOX13(1)
<---------
MYB52(2)
--------->
ANAC58
----
ZAT2
<---------
SPL7
<---------
YAB1
<------
ZmHOX2a(1)
--------->
ALFIN1
--------->
ANAC58
tcgagagtggacgcacgcgtgtctatacgattgatatgtacatgtaaggagagacaacaaac
ctgtttgggaatggggaacgaattgaaggaagccat
tg
19974800
--------->
ALFIN1
<---------
At4g35610
--------->
At4g35610
--------->
At4g35610
--------->
At4g35610
<---------
WOX13(1)
--------->
CCA1(2)
--------->
ZAT2
--------->
ATHB12
--------->
ARR11(3)
<---------
At4g35610
<XXXXXXXXXXXXXXXXXXXX
MIR4227
<---------
ANAC46
<---------
ZAT2
<---------
YAB1
<---------
ARR11(3)
<-----------
RAV1(2)
--------->
ICU4
--------->
ZAT14
<---------
ANAC58
-------->
ANAC58
<------
ZmHOX2a(1)
<---------
ZAT14
<---------
ANAC58
-------->
ANAC58
<------
ZmHOX2a(1)
<---------
At4g35610
--------->
ANAC46
<---
agacgcagatgggagcggaggaaggagatgattggagtcagtggagagatatagtttgtgtgcaaattgtatggtctacgacttctctcttctaatttgc
19974900
--------->
At4g35610
<xxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<------------------------
ANAC81
----------->
GT1
--------->
ARR11(3)
<----------
DOF2
<-----------
GT1
<---------
ARR11(3)
*
TSS
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
--------->
RVE1(1)
<-------
GAMYB
<------------------------
ANAC81
--------->
CCA1(1)
--------->
MYB52(2)
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
--------->
ANAC46
<---------
ANAC58
<xxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
--------->
ANAC46
------
<---------
ANAC58
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<---------
YAB1
>>>>>>>>>
RAP2.2
------
MYB59
<---------
MYB52(1)
<xxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
--------->
AHL20(2)
<-----
ctaattccctctctccgtttcgttgcc
actcttttttttttttttttttttttttttactcagttgtaaatttttatacacaaaatatctaaacccaaat
19975000
--------->
TOE2(2)
<<<<<<<
ZML2
--------->
MYB52(1)
<---------
ICU4
--------->
TOE2(3)
<---------
ATHB12
--------->
TOE1(3)
<---------
ICU4
--------->
MYB46(3)
<---------
ARR14(2)
----
<---------
AHL20(2)
--------->
DEAR3(1)
--------->
ARR14(2)
------
--------->
AHL20(2)
--------->
MYB46(3)
------->
TEIL
<---------
ARR11(3)
---------
--->
ARR14(2)
--------->
YAB1
--------->
DEAR3(2)
<<<<<<<<<
EIN3
--------->
ARR11(3)
---------
----
ARR14(2)
--------->
AtMYB61
<---------
YAB1
<---------
YAB1
------>
ZmHOX2a(1)
--------->
AtLEC2
ccaaattttatgcaaccataactgaataaaccgacgttttcattcaatgtatatgtttatagcaatatcctaatcactagaacatgaaatgcaaacgtaa
19975100
--------->
ANAC46
--------->
ANAC58
<---------
YAB1
-------->
HAHB4
--------------->
AtSPL8
<---------
ICU4
--------->
ARR14(2)
--------->
YAB1
<---------
ARR14(2)
------->
GT1
--------->
ICU4
--------->
ANAC58
<---------------
AtSPL8
---->
DOF2
<----------
ID1
<---------
ATHB51
--------->
ICU4
-----
>
ANAC58
---------->
DOF2
<---------
ANAC46
--------->
CCA1(2)
<-----------
RAV1(1)
>
ANAC58
<---------
AHL20(2)
<----------
DOF2
---------->
DOF2
<------
ZmHOX2a(1)
---------
agaaatataaacttggtctatattaaaagagaagacaaaataatgctttgtgtaattatgaaaaagataagccatgaggattctatgttgtacaaatcta
19975200
<------
NtERF2
<---------
RAP2.3(1)
<---------
ORA47(2)
------>
NtERF2
--------->
RAP2.6(2)
<---------
ATERF1(1)
--------->
ATERF1(2)
--------->
LBD16
<---------
RAP2.3(2)
<-----
<---------
LBD16
<---------
RAP2.3(3)
<------
--------->
ARR14(2)
--------->
ATERF1(1)
---------
<------
ZmHOX2a(2)
<---------
ATERF1(1)
<--------
--------->
ARR11(3)
<-----------
HVH21
--------->
YAB1
--------->
DAG2
<---------
ARR14(2)
--------->
ANAC46
<---------
YAB1
----------------->
AGL1
<---------
ARR11(3)
--------->
ANAC58
<---------
DEAR3(1)
<---------
ICU4
<------
ZmHOX2a(1)
---------->
DOF2
<---------
ARR14(2)
<-----------
RAV1(2)
<---------
YAB1
--->
P
---------->
DOF2
--------->
ARR14(2)
--------->
ANAC58
<---------
ATERF1(2)
<---------
YAB1
>
ARR14(2)
---------->
DOF2
<------
ZmHOX2a(1)
--------->
ANAC46
--------->
ATERF1(1)
--------->
YAB1
ccagaggaccaaaaaagaaaagtgaaagaaacagaggatcatcgactaaaatccggcatgccctccgtcgcaggcggcacaaccagtatcatcatcatca
19975300
--------->
ANAC58
<---------
ATERF1(2)
--------->
ATERF1(1)
<------
NtERF2
<---------
ATERF1(1)
------>
NtERF2
<---------
RAP2.6(3)
>>>>>>>>>
AtERF-3
--------->
ATERF1(2)
--------->
RAP2.6(2)
--------->
RAP2.3(2)
--------->
RAP2.3(3)
<---------
ATERF1(2)
--------->
DEAR3(1)
>>>>>>>>>
AtERF-2
--------->
RRTF1(2)
--------->
ANAC58
--------->
ANAC58
>>>>>>>>>
AtERF-1
>>>>>>>>>
AtERF-5
>>>>>>>>>
AtERF-4
>>>>>>>>>
AtERF-7
--------->
RRTF1(1)
--------->
ERF1
--------->
RAP2.3(1)
--------->
ATERF1(1)
--------->
At4g35610
<---------
ATERF1(1)
--------->
ANAC58
<---------
TGA1a
<---------
O2
--------->
ANAC46
--------->
ANAC58
--------->
O2
<---------
ZAT2
--------->
TGA1a
<---------
At4g35610
------->
GAMYB
--------->
ATERF1(2)
--------->
At4g35610
=============
MYC_MYB
------->
TEIL
--------->
ZAT2
<---------
MYB52(2)
<---------
ARR14(2)
------>
NtERF2
<---------
At4g35610
<---------
At4g35610
--------->
ATHB12
----
ICU4
<------
MYB46(1)
<---------
ALFIN1
<------
NtERF2
-------->
HAHB4
---
YAB1
<------
MYB83
----------->
RAV1(1)
--------->
ARR14(2)
<---------
ATHB12
>
YAB1
<---------
TOE2(3)
--------->
At4g35610
------>
NtERF2
--------->
LBD16
--------->
ICU4
<--
-
ICU4
--------->
MYB59
<---------
At4g35610
--------->
ANAC58
<---------
YAB1
<-------
ttttcgcgattaggtttagtgctgatgcagcaacacacgagagccgccagcaagatgaatccccaaacaaatgcaaatgattgtgccagcttcaagaatt
19975400
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AGI:
At3g53920.1
Description:
SIGC (RNA polymerase sigma subunit C); DNA binding / DNA-directed RNA polymerase/ transcription factor. similar to SIGB (SIGMA FACTOR B), DNA binding / DNA-directed RNA polymerase/ transcription factor [Arabidopsis thaliana] (TAIR:AT1G08540.1); similar to sigma factor 3 [Sinapis alba] (GB:CAB83107.1); contains InterPro domain RNA polymerase sigma-70 factor; (InterPro:IPR000943); contains InterPro domain RNA polymerase sigma-70 region 3; (InterPro:IPR007624); contains InterPro domain Winged helix repressor DNA-binding (InterPro:IPR011991); contains InterPro domain RNA polymerase sigma factor, SigB/SigC/SigD, plastid (InterPro:IPR016262); conta
Range:
from: 19971847
to: 19974927
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
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