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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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         <---------MYB52(2)                                  --------->ARR14(2)
         --------->MYB46(3)                                  <---------ARR14(2)         ----------->GT1
-->GT1<----------ID1                                    --------->CCA1(2)               <---------ZAT6
>HSFB2a(2)                                           --------->ANAC46          --------->CCA1(2)  --
-HSFB2a(2)------->GAMYB                          <-----------GT1          ---------->DOF2       ----
 
atttcatagacaacaaacaaacaaaactttctattcaatacaaaatcaaattttacaagagacggattcagagataataaagagatgaagagagttaaat  19925900
                                ===============HOX2a_HOX2a
                                ------>ZmHOX2a(2)
                        <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)           ------>NtERF2
                     ------>MYB46(1)                                --------->RAP2.3(3)
                     ------>MYB83             --------->MYB55(2)    --------->DEAR3(1)
                   <---------MYB111(1)        <---------MYB46(3)   --------->ORA47(2)
                   <---------MYB59           --------->ALFIN1      --------->RAP2.3(1)
                  --------->ANAC55(2)        <---------AtMYB61     --------->ATERF1(1)
                  <---------ANAC55(2)       <---------MYB52(1)     <------NtERF2
               <---------ARR14(2)          --------->LBD16        <---------ATERF1(1)
               --------->ARR14(2)        <---------LBD16          ------>NtERF2<-----------GT1
     <---------WOX13(1)<---------ATHB12 ------>ZmHOX2a(1)        <---------DEAR3(1)
-------->DOF2  --------->ARR11(3)  <---------At4g35610         <------ZmHOX2a(1)     *TSS      <----
----->YAB1     <---------ARR11(3)  <---------ZAT2       ---------->DOF2     <---------ICU4 <--------
 
caaaagggattgatagaagatacctaatcaatggatcgagctcctccggtggttcagacaaaagaaggacgccgactgaaaattacatttttgtatatat  19926000
                                       --------->ATHB12
                         <---------ZAT18<------------CBF
                   --------->TOE2(3)  <---------YAB1                         --------->AHL20(2)
-------GT1--------->ANAC58           <-----------TBP<---------AHL20(2)     ----------->GT1        <-
---TBP    --------->ANAC58          <----------DOF2 --------->AHL20(2)   ---------->DOF2     <------
 
accagagagactcaagaaaaaaccctagtccagtttgggcttttattgggccttataaattttgggtcagttttgacaaagtaaatacaaggctatagct  19926100
                     <---------At5g28300
                    <-----------GT1
                --------->ATHB51
                --------->AHL20(2)
                <---------ICU4
                <---------AHL20(2)
            <---------AHL20(2)
           <---------WOX13(1)
      <---------ANAC58                            <------NtERF2                                    -
      --------->ANAC55(2)                  ------->GAMYB                                           <
      <---------ANAC58                  --------->MYB52(1)                            --------->ANAC58
      <---------ANAC55(2)            --------->TOE1(3)                    --------->DAG2  --------->ANAC58
---------DOF2  --------->ICU4        --------->TOE2(3) ----------->GT1  ---------->DOF2   --------->ANAC58
---At4g35610--------->AHL20(2)  ---------->DOF2------>NtERF2   <----------ID1         --------->ANAC58
 
gctttgctaacgtgattaattatttaccatttaccaaaagccttaaccgaggccgagcgagaaaaaaaaacaaaaaaaaggtagagggcaagaacgtcat  19926200
                                                                      <---------ANAC58
                                                                    <-----------GT1
       <------------CBF           <---------ARR14(2)             *TSS <---------ANAC58
   --------->ANAC58               --------->ARR14(2)           <---------DAG2
   --------->ANAC46         --------->ALFIN1                   <----------DOF2
   --------->ANAC58       <---------ANAC58                  <-----------GT1
-------->HSFB2a(2)        <---------ANAC58              <-----------TBP                      -------
---------HSFB2a(2)        --------->ALFIN1            <---------MYB52(1)         <---------MYB52(1)
 
ttccacaaggaattgaatcggaaaacgaggtgtgccgaattcgaagcctttggacccgtttttatacttttttacttgccattcgtttttttttgttcat  19926300
                         <---------GLK1(1)
                    --------------------->WRI1
            --------->ANAC55(2)                                            ------>NtERF2
            <---------ANAC46                                           ------>ZmHOX2a(1)
            <---------ANAC55(1)                                      <---------At4g35610
            <---------ANAC58                                         ----------->RAV1(2)
            <---------ANAC55(2) ------>ZmHOX2a(1)                  <-----------GT1
 <------NtERF2      <----------DOF2                             --------->GLK1(1)      <---------AHL20(2)
-->ATHB12   <---------ANAC58<-----------GT1<---------MYB59      <---------GLK1(1)      --------->AHL20(2)
 
tggcctcatttgattacttgtttctttgatttctccttccatagaaccgaattgttttcagtctgagatttctcctgccgagagaacgattttaatctat  19926400
                                                        <---------MYB52(1)
                                                       --------->TOE2(3)
                                                      ----------->GT1
                                                   <---------GLK1(1)
                                                   --------->GLK1(1)
                                              <---------LBD16
                                              ------>ZmHOX2a(2)
                                            <---------ARR14(2)
                                            --------->ARR14(2)
                                          ------>ZmHOX2a(1)
                                        ----------->RAV1(2)
                                        <-----------------AGL1   <---------WOX13(1)
                                        ----------------->AGL1<---------YAB1
                                   <----------DOF2<---------ARR14(2)
                 <---------MYB59 ---------->ID1   --------->ARR14(2)                          <-----
 ------>ZmHOX2a(1)              <-----------GT1 --------->LBD16--------->ATHB12  <-------TEIL ------
 
tttcctcggtaatgttatagcctaatttgtgtttttttctttttcctgatccggatatcgttattctgattgacaattgtcagtttcatcttctattctg  19926500
                                                                                         --------->ATHB12
                                                                          --------------->AtSPL8
                   ------>ZmHOX2a(2)                  <---------ANAC58    <---------------AtSPL8
                 <---------ARR14(2)                   <---------ANAC58    <---------------AtSPL3
                 --------->ARR14(2)        <---------ZAT18     ----------->GT1------->TEIL
    <---------YAB1<------ZmHOX2a(2)       <---------ANAC58     <---------ANAC58         <---------YAB1
----ANAC46   <-----------GT1              <---------ANAC58     <---------ANAC46       --------->YAB1
----->GT1   <-----------GT1  <-----------TGA1  <----------DOF2 <---------ANAC58 --------->TOE2(3)
 
tgaaattttgatttttttccgatctgtgatttcgtcattgtatcagcgtgcttatatgcgtttgaggcgtaaatgagtgtgtacctcatttatcatttgc  19926600
                                                                       --------->HSFB2a(2)
                            ----------->GT1                            <---------HSFB2a(2)
                          --------->ZAT2                              ------>ZmHOX2a(2)
                          <---------ZAT2                            <---------ARR11(3)
                          <---------At4g35610                       --------->ARR14(2)
                          --------->At4g35610                       <---------ARR14(2)
                     ------>ZmHOX2a(2)                              --------->ARR11(3)
                    <------ZmHOX2a(2)                            --------->HSFB2a(2)
                   --------->ARR11(3)                            <---------HSFB2a(2)
                   --------->ARR14(2)  --------->YAB1           <---------LBD16
                   <---------ARR14(2) <---------YAB1            <-----------------AGL2
                   <---------ARR11(3)--------->AHL20(1)       --------->GLK1(2)        <-----------GT1
                   --------->AGP1    <---------AHL20(1)  <---------ANAC46       <---------AHL20(2)
                   --------->ARR14(3)<---------AHL20(2)  <---------ANAC58     --------->AHL20(2)
                   <---------ARR14(3)--------->AHL20(2)  --------->ANAC55(2) <---------ARR11(3)    <
                  --------->GLK1(1) --------->YAB1       <---------ANAC55(2) <---------AHL20(1)    <
                  <---------GLK1(1)<---------YAB1        <---------ANAC58    --------->ARR11(3)    <
                 ----------->ARR10--------->AHL20(2)--------->YAB1  <---------AGP1   <-----------HVH21
 
tatgttttttttttttaacagagatcttcagctgtaatattataatagattgaattgataacgtgattctggatctggaatatatatatgtcacattctt  19926700
                                                                                            <-------
                                                                                          --------->ATERF1(2)
                                                                                          <---------ATERF1(2)
                                                                               --------->ARR11(3)
                                                                               <---------ARR11(3)
                                                                             --------->ARR11(3)
                                                                      --------->ICU4     --------->RAP2.6(3)
                                                                      <---------YAB1     <---------LBD16
                                                                     <---------TOE2(3)  -------->P
                                                                    --------->YAB1      --------->MYB52(1)
             ---------->ID1                                       --------->AHL20(2)  ------>ZmHOX2a(1)
  --------->ARR14(2)                                              <---------AHL20(2) <---------ANAC58
  <---------ARR14(2)          <---------YAB1                      <---------AHL20(1) <---------ANAC58
 <------ZmHOX2a(1)           <---------AHL20(2)                  --------->YAB1--------->AHL20(1)
---------TOE2(3)             --------->YAB1                     <---------YAB1--------->CCA1(2)
---------TOE2(2)             --------->AHL20(2)        ------->TEIL<---------YAB1 <-----------GT1
---------TOE1(2)   <----------DOF2   --------->ZAT14   --------->GLK1(2)    <<<<<<<<<RAP2.2---------
 
cttaggatttgattttgtctctctttggatattaatattcttcactcccttgaaaatgaatctgtttattataatgtttagatatattccttaccggcat  19926800
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AGI:  At3g53740.1   
Description:  60S ribosomal protein L36 (RPL36B). Identical to 60S ribosomal protein L36-2 (RPL36B) [Arabidopsis Thaliana] (GB:Q9M352;GB:Q8L5U3); similar to 60S ribosomal protein L36 (RPL36A) [Arabidopsis thaliana] (TAIR:AT2G37600.1); similar to 60S ribosomal protein L36 (RPL36A) [Arabidopsis thaliana] (TAIR:AT2G37600.2); similar to ribosomal protein L36 [Triticum aestivum] (GB:AAW50980.1); contains InterPro domain Ribosomal protein L36e; (InterPro:IPR000509)
Range:  from: 19924720    to: 19925986    Orientation: Reverse
Links:  TAIR  MIPS 
 
AGI:  At3g53750.1   
Description:  ACT3 (ACTIN 3); structural constituent of cytoskeleton. Identical to Actin-1/3 (ACT3) [Arabidopsis Thaliana] (GB:P10671;GB:P53493;GB:Q9M351); similar to ACT1 (ACTIN 1), structural constituent of cytoskeleton [Arabidopsis thaliana] (TAIR:AT2G37620.1); similar to ACT12 (ACTIN-12), structural constituent of cytoskeleton [Arabidopsis thaliana] (TAIR:AT3G46520.1); similar to ACT1 (ACTIN 1), structural constituent of cytoskeleton [Arabidopsis thaliana] (TAIR:AT2G37620.2); similar to actin [Striga asiatica] (GB:AAC49651.1); similar to Actin (GB:O81221); similar to actin [Striga asiatica] (GB:AAC49652.1); contains InterPro domain Actin/actin-like; (I
Range:  from: 19926266    to: 19928619    Orientation: Forward
Links:  TAIR  MIPS 
 
 
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