Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                            <-----------GT1                      --------->GLK1(2)            <---------AtLEC2                                       <---------YAB1            <---------ANAC58                                 <----------DOF2            <---------ANAC58 <---------AtLEC2          ----------->GT1                            ---   --------->DAG2 --------->LBD16                      --------->YAB1                         -------  ---------->DOF2 ------>NtERF2--------->AtLEC2   --------->AHL20(2)             <----------DOF2-----   aaaaaaaagtttttgcatgccgagaatttttccatggaaaacaaaacaaaaaaaaaatcgtaactttctatgtttgagtaaaactttactagaccgaaaa  19291900                         --------->DAG2                        ---------->DOF2                   ==================================================================================                   --------->TOE2(3)                   <---------------AGL15                                                     <-------                   --------->TOE1(3)                                         ----------->GT1 <-------                   --------------->AGL15                                 --------->At4g35610 --------              <---------DAG2         <---------YAB1                   --------->At4g35610  <---------    --------->YAB1----------------->AGL1                         --------->ATHB12      <---------At4g35610 -------->GT1 <----------DOF2     --------->ICU4                 <---------ICU4        --------->At4g35610 --->DOF2  <---------AHL20(2)  --------->ICU4                   --------->ICU4        =============== ------>GT1<-----------GT1----------->GT1       ------->TEIL    <---------YAB1        <-----------RAV1(1)   gagaaataaaaatttactttacctgaaaaagtcaaaatgatcaatagatgaatctctgtggagaacattattagcagaagagtgaattttgctgcaggtg  19292000         <---------ARR14(2)        <-------GAMYB        --------->At5g28300    --------->MYB52(1)    ------------>AtMYB77   ----------->TGA1   ----------->HVH21                                  <---------AHL20(2) ===============================MADS_MADS         --------->YAB1 --At4g35610       <----------DOF2               <---------YAB1 --ZAT2<---------MYB46(3)                  <---------ARR11(3)                                  ------ ->At4g35610    --------------->AGL15      --------->ARR11(3)<---------GLK1(2)  --------->AHL20(2) --RAV1(2)    <---------At4g35610      ---------->DOF2--------->AHL20(2)--------->YAB1       -------- ==RAV<---------ANAC46          --------->At4g35610   <---------YAB1   <---------YAB1    ---------->DOF2   agagactgacggttactgctcctttgggaatagtagatgaagaaagatgtcatcatattattagattcttcttatcatcaaatttaagagagaaagataa  19292100                                                                              --------->ARR14(2)                                                                              <---------ARR14(2)                                                                            --------->LBD16                                                                           <---------HSFB2a(2)                                                                           --------->HSFB2a(2)                                                                           --------------->AGL15                                                                          ----------------->AGL1                                                                          <-----------------AG                                                                          <-----------------AGL2                                                                          <---------LBD16               --------->ANAC55(1)                                   --------->ARR11(3)        <-----         <---------ANAC55(2)                                        <---------GLK1(1)       <--------        --------------->AtSPL8                                      <---------CCA1(1)  ==============        <---------------AtSPL8                                      <---------RVE1(1) --------->GLK1(1)        <-------TEIL                        --------->ZAT14         --------->CCA1(1) <---------GLK1(1)        --------------->AtSPL3              <---------ZAT14         --------->GLK1(1) ===============    <---------------AtSPL3                  --------->ZAT18         --------->RVE1(1) <------ZmHOX2a(2)    <---------------AtSPL8          ------->TEIL                   --------->ARR11(3)<---------ARR11(3)    --------------->AtSPL3          --------->GLK1(2)--------->CCA1(2)    <-----------------AGL1 ---->DOF2     --------->ANAC46     --------->ARR14(2)             <---------ARR11(3)--------->ARR11(3) ->ARR11(3) <-------TEIL            <---------ARR14(2) <---------YAB1<---------ARR11(3)------>ZmHOX2a(2)   agagaagaagtacgtacacttaattgtatgtttcagtgaatctgagtaaactgagttatgagagaagaagatatcttccggatttgggatctctgtgttg  19292200                <------ZmHOX2a(1)               ----------->GT1            <------ZmHOX2a(2)           <---------ARR14(2)      <---------ANAC58      <---------ANAC58      <---------ANAC46 ----MYB46(3)<-----------RAV1(2) ---RAV1(1)--------->ARR14(2)    <----------DOF2       ---------->DOF2 ======================HOX2a_HOX2a            --------->ALFIN1                                 <----- ======================HOX2a_HOX2a   <----------DOF2>>>>>>>>>TBF1  ----------->GT1      ----------->GT1   ttgttgttgtgtggatcaggagaaaactctctggtctttctttcacgagtggaagaagaaagagagagatagaaaaaacacagagagattgtgtaataaa  19292300                                                                                                    -                                                                                                    -                                                                                                    <                                           <-------MYC4                                             <                                           ------->PIF5                                            --                                           ------->MYC2                                            --                                           <-------MYC2                                            --                                           <-------MYC3                                         <----                                           ------->MYC3                                        ------                                           <-------PIF5                                       <------                                          --------->ANAC58                                    -------                <---------AHL20(2)        --------->ANAC58                                    -------         --------->ANAC58           <------------CBF                                      ===========         --------->ANAC58      <-------GAMYB                                              ---------->DOF2        --------->DAG2  *TSS  <---------MYB46(3) ----------->HVH21                       <------ZmHOX2a(1)       ---------->DOF2  ---------->DOF2  <---------TOE1(2)      <---------AHL20(2)      --------->ANAC58 ------GT1      --------->AHL20(2) <---------AtLEC2       ------->GAMYB                 --------->ANAC58   ctgtttttaaaaagcaaattaaaaacaaaagatggttgcattgcacgttctctgacacaaccccatttttttttttttgttcattcggacaggaaagata  19292400          <---------MYB52(1)         ============================MYC_MYB         <-------GAMYB              <---------MYB46(3)        <---------ANAC58         --------->LBD16    =================================bZIP_DOF    --------->DEAR3(1)          --------->DEAR3(1)    <----------DOF2             <---------DEAR3(1)   <------NtERF2               <------NtERF2  ------>NtERF2               ------>NtERF2 --------->ANAC46            --------->ANAC46 --------->ANAC58          --------->ANAC58 --------->ANAC58          <---------TGA1a ------>MYC2               --------->ANAC55(2) ------>MYC3               --------->TGA1a -------MYC2               <---------ANAC55(2) -------MYC3               =======================================bZIP_DOF ------->ANAC46        <-----------HVH21 ------->ANAC58       <------MYB83  --------->ATHB12 ------->ANAC58       <------MYB46(1)                  <----------DOF2 ---TEIL<---------ANAC58   --------->ANAC58          --------->At4g35610 --->CCA1(2)          <---------MYB46(3)             <---------At4g35610 ---ARR14(2)         <---------AtMYB61               --------->ZAT2 -->ARR14(2)      --------->ALFIN1<---------MYB52(1) <---------ZAT2               ------>ZmHOX2a(1) -->ARR11(3)      <-----------RAV1(1) <---------WOX13(1)            --------->GLK1(1) ====================================bZIP_DOF      <-----------RAV1(2)  <---------ALFIN1   <---------   cacgcgccttccgttgggatgtgttggtcacgcgccggtgattgatatgcagaccagctgtatcgctggggtctccactctctcctactgtctctttctc  19292500                                                                               ----------->RAV1(2)          <---------AHL20(1)                                                  -------->P          <---------AHL20(2)                                                  --------->MYB52(1)          --------->AHL20(2)                                              <-----------GT1     <---------YAB1                                                      --------->AHL20(2)   --------->YAB1    <------MYB83                                    <---------AHL20(2) <-----------GT1   <--------P                        <<<<<<<<<<MYB80<---------AHL20(2)      <-------- -DOF2<---------ICU4 <------MYB46(1)            <----------DOF2     --------->AHL20(2)   <---------YAB1   atttttcatcattttattttggtagggacacatttttaagtatagctaagcttttggtttgattacaaaattaaataaactacctggttttcttattctt  19292600                                           ---------->DOF2                               --------->AHL20(1)                               <---------AHL20(2)                               --------->AHL20(2)                   --------->MYB52(1)     <---------AHL20(2)            <---------AHL20(2) <---------YAB1                                          <---------ARR14(2)    <---------ANAC46       <---------GLK1(2)<---------TOE2(3)                          --------->ARR14(2)    <---------ANAC58 --------->ANAC58     --------->AHL20(2)                      <-----------HVH21    <---------ANAC58 --------->ANAC58<---------YAB1          --------->ICU4---------->DOF2     ------ -YAB1    <---------AHL20(2)  --------->AHL20(2) --------->AHL20(2)   --------->YAB1  <---------CCA1(2)   caacttgcttattttaaaatgaaacggcagaattttattgtcatttaaagataaatttgagtaattagggaaacataaaaagcatgtcatatccaaattg  19292700                                                                                 <---------ICU4                                                                                 --------->ATHB12                                                                                --------->ICU4                                                                                <---------YAB1                                                                              -------->ATHB1                                                                              <---------ICU4                                                                              <--------HAHB4                                                                              --------->YAB1                                                                             --------->ICU4                                                                             <---------ATHB12                                             <------MYB83                  --------->WOX13(1)                                             <------MYB46(1)         <---------AHL20(2)         --------->ZAT2          <----------DOF2                <---------AHL20(1)         <---------ZAT2 <---------YAB1       <---------ANAC46   --------->AHL20(1)              <----         <---------At4g35610     ------>ZmHOX2a(1)              <---------AHL20(2)    <---------ANAC58         --------->At4g35610  ---------->ID1<---------MYB46(3)  --------->AHL20(2)    <---------ANAC58 ----->GT1            <----------DOF2       --------->MYB46(2) --------->AHL20(2)--------->ATHB51  <-   tcaatttgctcagcttaatctctgcttttattgtccttttatttgtttggtgagagacacttgaattttatttcattcaatcattattgcatgcttcgat  19292800  Previous    Next  AGI:  At3g51950.1    Description:  zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein. similar to RNA binding [Arabidopsis thaliana] (TAIR:AT3G63450.1); similar to RNA binding [Arabidopsis thaliana] (TAIR:AT3G63450.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO40730.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 19288756    to: 19292324    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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