Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                      --------->ICU4                 -------->ATHB1               --------->ANAC46                    --------->ATHB51               <---------ANAC55(2)                 --------->ATHB12           ----------->RAV1(1)                    <---------YAB1        --------->ANAC46                      --------->ANAC55(2)                            <------- -----ANAC55(2)--------->ANAC55(2)            --------->ANAC58              <---------ARR11(3)  <---- ---->ANAC55(2)--------->ANAC55(1)            <---------ANAC55(2)           --------->ARR11(3)  <---- --TEIL <---------ALFIN1 --------->AHL20(2)   --------->ANAC58          ---------->DOF2    <---------WOX13(1) -----GT1 --------->ANAC46           --------->TOE2(3)           <------NtERF2        <----------DOF2   atgacttcccccacaacacataatttttaaaataggcattcttagattacgcattattggacaaggtgccactgaaaagatagtttttctttgatttact  18520800                                       --------->WOX13(1)                                     <---------YAB1                 <-----------GT1   --------->YAB1            --------->AHL20(1) --------->ATHB51            --------->ARR11(3) <---------ICU4            <---------AHL20(1) --------->ATHB12            <---------ARR11(3)<---------YAB1          <---------AHL20(1)  --------->ICU4         --------->YAB1     <--------HAHB4      --------->YAB1        <---------ICU4  --------->AHL20(2)       <---------YAB1  <---------AHL20(2)    --------->AHL20(2)                             --------->REM1(1) ----GT1<---------YAB1  <---------AHL20(2)                    <---------WOX13(1) ------DOF2 <---------ICU4<-----------GT1       <-------TEIL--------->ATHB12 -----DAG2<---------AHL20(2)--------->YAB1--------->YAB1   <---------AHL20(2)                     <--   ttatttttttataatattttcacaaatttatcattattgatcattcaaaattcatctctatttcattgattctacatcgactgcatcaaactctaatatt  18520900                                                                  <---------YAB1                                                           --------->AHL20(1)                                                           <---------AHL20(2)                                                           <---------AHL20(1)                                                           --------->AHL20(2)                                                          --------->AHL20(2)                                                          <---------AHL20(2)                                                      ----------->TBP           --------->AHL20(1)                                                      <---------AHL20(2)        <---------AHL20(1)                                                      --------->AHL20(2)       --------->AHL20(2)                  --------->AHL20(1)                ----------->TBP        >>>>>>>>>>GT-3b                  <---------AHL20(1)              --------->YAB1 <---------TOE2(3)                 <-    <---------ANAC58        >>>>>>>>>CBP60g       --------->AHL20(2)  ---------->DOF2     -----------    <---------ANAC58        >>>>>>>>>SARD1        <---------AHL20(2)<<<<<<<<<MYB98   ---------->DOF2 --------DOF2     --------->ARR11(3)         ------------>CBF  <---------AHL20(2)  <---------AHL20(2)   cttttttcgttcatttttgatatattggaaatttggaaagaatttagttcaattatataaataaatttatgttaaagaaaaatatataaaagatgaaaat  18521000                                                                    <---------ALFIN1                                                               ------->MYC2                                                               <-------MYC2                                                               ------->MYC3                   ----------->GT1                             <-------MYC3               --------->ARR14(2)                             =======================================               <---------ARR14(2)                             --------->TGA1a        <---------AHL20(2)                                   <---------TOE1(2)              ---------        <---------YAB1                                      <---------ALFIN1            --------->AHL20(2)      <---------RVE1(1)                                    --------->DEAR3(1)           --------->AHL20(1)     --------->ARR11(3)                                  --------->PCF2                 <---------AHL20(2)   ----------->ARR10                                  ==================bZIP_DOF--------->ANAC58 -----ZmHOX2a(1)--------->CCA1(2)                     ---------->DOF2           --------->ANAC58  --- >GT1<---------ARR11(3)                  <---------ALFIN1<---------ZAT18--------->YAB1 --------->AHL20(2)   aggatgagatattaatggatatggagaaataagagaagaagcaccacttgatcacttagagcccacgttcccactcttaatcacccaaaaaaaattaaaa  18521100                                         <---------ZAT14                                         --------->ZAT14                                         <---------ZAT18                                       =======================================bZIP_DOF                                       =======================bZIP_DOF       --------->YAB1                                    <---------ZAT18                         <---------YAB1                                  <---------At4g35610                     --------->YAB1            -   <---------ANAC58               --------->At4g35610            ---------->ID1 <---------ICU4     <-   <---------ANAC58               --------->ZAT2                <-----------GT1 --------->YAB1   ---- ========bZIP_DOF                 <---------ZAT2   <----------DOF2 <----------DOF2--------->At4g35610 >AHL20(2)        <---------At4g35610  --------->ANAC46     <------------------------ANAC81    ------ ------->DOF2     --------->At4g35610  --------->TGA1a   <----------DOF2<-----------TBP ------------>CBF   caaagacgtgctcacatctcatctcactccctcaccagctcacttcactctctctttctctttttttttcttttttttataatcatctctctcaattctc  18521200                                                                          <---------ALFIN1                                                                       --------->AtMYB61                                                                       <---------ALFIN1                                                                       ------->GAMYB                                                                      <---------MYB55(2)                                                                      <---------MYB52(2)                                                                   --------->MYB46(3)                                                                 <---------ALFIN1                                                                 --------->AtMYB61                                                                xxxxxxxxxxxxxxxx>smallRNA(s)                      ----------->RAV1(1)                      ----------->RAV1(1)                     <---------ALFIN1                         --------->DEAR3(1)                -----                    --------->MYB46(3)                        --------->AtMYB61       <----------DOF2                 <------ZmHOX2a(2)                            <---------ALFIN1     ------>ZmHOX2a(1)          <---------ATHB12                                   --------->MYB46(3)   <---------ALFIN1 -------->YAB1  <---------ARR11(3)                         <---------ALFIN1     ------>ZmHOX2a(1) <-- --------ATHB12 --------->ARR11(3)                         --------->ANAC46    <---------ALFIN1<----- ----->WOX13(1)--------->YAB1         <---------ALFIN1  --------->AtMYB61 --------->DEAR3(1)  <------ ------>CBF ---------->DOF2        <---------ETT(2)  <---------ALFIN1 --------->MYB46(3)   ------>ZmHOX2a(1)   aatcatcttctaatcaaagatcaccaccatatggctctcgacactctcaattctcccacctccaccaccacaaccaccgctcctcctcctttcctccgtt  18521300                                                         <-----------TGA1            ------>ZmHOX2a(1)                                                         <-----------HVH21   ------>MYB46(1)                                                        --------->ANAC46     ------>MYB83                                                        --------->ANAC58   ------->GAMYB                                                        --------->bZIP60(2)--------->AtMYB61    --------->ANAC58                                    --------->ANAC58   <---------MYB59    --------->ANAC58          --------->YAB1      <-------TEIL            --------->MYB46(3)    --------->ANAC46          --------->ATHB12  --------->TOE1(2)        -------->P <---------ALFIN1 ---->WRKY38(1) --------->ANAC58               ----------->GT1        <------ZmHOX2a(2) ------>ZmHOX2a(1) -------ANAC46  --------->LBD16               --------------->AtSPL3  ======================HOX2a_HOX2a ----MYB52(1)   --------->ANAC58       ---------->DOF2 <-----------STF1 --------->WOX13(1) -GAMYB--------->MYB52(1)    <---------ATHB12 <---------------AtSPL8  =========================HOX2a_HOX2a   gcctcgacgaaaccgagcccgaaaacctcgaatcatggaccaaaagaaaacgtacaaaacgtcaccgtatagatcaaccaaaccctcctccttctgaaga  18521400                                        ------>ZmHOX2a(1)                 ------>NtERF2          =================================HOX2a_HOX2a           <----------DOF2      ------->PIF5 <------ZmHOX2a(2)     --------->YAB1               -----           ==============================bZIP_DOF                 <------ZmHOX2a(2)           -------  --------->ARR11(3)            <-------PIF5 <---------ATHB12    <---------ARR14(2)          <------ZmHOX2a(2)  --------->ARR14(2)           --------->TGA1a<---------ICU4     --------->ARR14(2)    <-----------HVH21  <---------ARR14(2)           <---------TGA1a--------->YAB1<-----------HVH21      <---------ALFIN1  <---------ARR11(3)   <---------YAB1 --------->ATERF1(1)  --------->DEAR3(1)     <---------ZAT14  --------->GLK1(2) ------>ZmHOX2a(1)<---------ATERF1(1)<---------ALFIN1     <----------DOF2 <-------  <-----------ARR10 ================================HOX2a_HOX2a<---------DEAR3(2)>>>>>>>>>>>>>>>>>LFY   agagtatctcgctctttgcctccttatgctcgctcgtggctcctccgatcatcactctccaccgtcggatcatcactctctttctccactgtccgatcat  18521500                                <----------DOF2       <------MYB46(1)                             <---------ARR11(3)       <---------ANAC46                             <---------ARR11(1)       <------MYB83                             --------->ARR14(2)      <---------MYB46(3)                             --------->GLK1(2)       --------->MYB111(2)            <---------MYB52(1)                             <---------ARR14(2)      --------->MYB111(1)      --------->ARR14(2)                             --------->ARR11(3)      <<<<<<<<<<MYB61        --------->LBD16                             <-----------ARR10       --------->MYB52(2)   <---------LBD16                            <---------CCA1(2)        --------->MYB55(2)   --------->At4g35610                     <-----------RAV1(1)             --------->MYB59 --------->ANAC58                   <---------MYB52(1)                --------->MYB46(2)  --------->MYB52(1)                   ----------->RAV1(2)               <---------AtMYB61 ----------->HVH21                 <---------ANAC58                   <---------MYB55(1)<-----------HVH21--------->MYB52(2)                 <---------ANAC55(1)               <---------MYB52(1)--------->ANAC58<--------P ---->At4g35610  <---------ANAC58                 <-----------HVH21  --------->ANAC46<---------MYB52(1) -->YAB1         <---------ANAC46              ------>MYB46(1)      XXXXXXXXXXXXXXXXXXXX>MIR841B --ATHB12       <-----------------AGL1         ------>MYB83   --------->ANAC46<---------ARR14(2)   --   cagaaagattacaagtgttccgtctgtggcaaatctttcccgtcttaccaagcgttaggtggacacaaaacaagtcaccggaaaccggttagtgtcgatg  18521600                      --------------->AGL15                      <---------------AGL15                     ----------------->AGL3                     <-----------------AGL3                     <-----------------AGL1             --------->ARR14(2)                          ---------->DOF2           ------->GAMYB                                <---------WRKY12          --------->ANAC58                              <---------WRKY38(1)          --------->ANAC58                             --------->WRKY18(1)          --------->ANAC55(2)                          <<<<<<<<<<WRKY62          <---------ANAC55(2)------->GAMYB             <<<<<<<<<<WRKY40         >>>>>>>>>MYB98--------->YAB1                  <<<<<<<<<<WRKY18        --------->MYB52(1)--------->MYB52(1)         <------MYB83     --------->YAB1  ----------------->AGL2          <------MYB46(1)  -------->HAHB4     <-----------------AGL2<------------MYB.PH3(1)        --------->ARR14(2)  --------->YAB1  <---------MYB52(1)     --------->MYB52(1)  --------->ALFIN1 --------->ZAT18 <---------YAB1 ----------->GT1          <-----------GT1<---------WRKY45  <---------ICU4 ------->YAB1<---------ARR14(2)  --------->ICU4  --------->MYB52(2)    --------->YAB1   ttaataatagtaacggaaccgttactaataacggaaatattagtaacggtttagttggtcaaagtgggaagactcataactgctctatatgttttaagtc  18521700  Previous    Next  AGI:  At3g49930.1    Description:  zinc finger (C2H2 type) family protein. similar to AZF1 (ARABIDOPSIS ZINC-FINGER PROTEIN 1), nucleic acid binding / transcription factor/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT5G67450.1); similar to zinc-finger protein BcZFP1 [Brassica rapa] (GB:AAB53261.1); similar to zinc-finger protein-1 [Brassica rapa] (GB:AAB53260.1); contains InterPro domain Zinc finger, C2H2-like; (InterPro:IPR015880); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) Range:  from: 18521231    to: 18521948    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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