Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                             <------ZmHOX2a(2)                    <------ZmHOX2a(2)                                                     <---------ARR14(2)                   --------->ARR14(2)                                                     --------->ARR11(3)                   <---------ARR14(2)                                                     <---------ARR11(3)             --------->AtMYB61             ----------------->AGL1                         --------->ARR14(2)          --------->ANAC46               --------->ANAC46                    --------->LBD16------>ZmHOX2a(2)     <---------ARR14(2)                  --------->ANAC58                   --------->HSFB2a(2)     --------->ARR14(2)                  --------->ANAC58                   <---------HSFB2a(2) ----->ARR14(2)------>MYB83      <---------ARR11(3)                 <--------P           <---------GLK1(1) ------ARR14(2)------>MYB46(1) --------->ANAC58                --------->MYB52(1)      <---------HSFB2a(2) >MYB52(1)<---------ALFIN1     --------->ANAC58--------->ARR14(2)  <---------MYB52(1)  --------->HSFB2a(2)   ttcttcgaatccacaccttccgatcccaattgcaagaaattcgaagccatatttgtaaacttcgataccggtaagtttccagagagtttcgagatcccag  18484300                                                      <---------ICU4                                                     ==========================HOX2a_HOX2a                                                     ------>ZmHOX2a(1)                                                 <---------ARR14(2)     ------>ZmHOX2a(2)                                                 --------->ARR14(2)     ===========================HOX2a_HOX2a                                                 <---------ARR11(3)    --------->CCA1(2)                                                 <---------GLK1(2)     <------ZmHOX2a(2)                                                 --------->AGP1        ============================HOX2a_HOX2a                                                 --------->ARR11(3)    --------->ARR14(1)                                               ----------->ARR10      --------->AGP1                                              --------->YAB1          <---------ARR11(3)                                             <---------ATHB12         <---------ARR14(2)                                           --------->WOX13(1)    --------->LBD16    --------->LBD16                                        --------->ANAC58       <---------LBD16     <---------ANAC58                ========================HOX2a_HOX2a  =========================HOX2a_HOX2a                ------>ZmHOX2a(2)========================HOX2a_HOX2a  --------->ARR14(2)               <------ZmHOX2a(2) =========================HOX2a_HOX2a<---------GLK1(1)               =========================HOX2a_HOX2a------>ZmHOX2a(2) --------->GLK1(1)      ------>ZmHOX2a(1)         --------->TOE2(2)       ------>ZmHOX2a(1)<------ZmHOX2a(2) ----------->ARR10       =========       -------->P     ------->GAMYB     --------->ANAC46      ------>MYB83--------->At4g35610       ------->TEIL  --------->ANAC46   --------->ANAC58      ------>MYB46(1)      <---------ANAC58   tcttaaatctacctccgatctcaacgaaatcgttcctgattccagcaatcagatcctcatcaccttccgcgagatccgatgacttccgagtctcctcatc  18484400                                        ---------->DOF2                                       <------ZmHOX2a(1)                                   <------NtERF2                                  ------>NtERF2                                 <---------ANAC58                                 <---------ANAC58          <---------At4g35610                                <------NtERF2              --------->At4g35610            --------->ARR14(2)  --------->ATERF1(1)        --------->ZAT2            <---------ARR14(2) <---------ATERF1(1)     <---------ALFIN1          <---------SPL7       <---------DEAR4(2)  ------->GAMYB       ------>NtERF2>>>>>>>>>TBF1<---------ANAC46 --------->ANAC58       --------->LBD16        <---------DEAR3(1)  --------->DEAR3(1)     ============================HOX2a_HOX2a --------->ANAC58     ------>ZmHOX2a(2)        --------->ALFIN1    <---------ALFIN1                   <---------ZAT14     --------->MYB46(3)      --------->ATERF1(1)  --------->ANAC58                   --------->ZAT14   <---------ARR14(2)       <---------bZIP60(2)  >>>>>>>>>MYB2           <---------ARR11(3)   --------->ARR14(2)      --------->ALFIN1  --------->ANAC46            --------->ARR11(3) ===========HOX2a_HOX2a   <------ZmHOX2a(1)  --------->ANAC58          <---------TOE1(3)            <   cacatgatccgccgtatcggaagaagaaggaggtggcgcgaggaaagaagcaacgccccatagctgacttcttaaggtcttggtgagttcagagatgtct  18484500                                                              <---------KAN4(2)                                                             <---------GLK1(2)                                                            <------NtERF2                                                           --------->LBD16         --------->O2                                     --------->RAP2.6(2)         <---------O2                               ------>ZmHOX2a(2)         <---------ANAC46                          <---------At4g35610    --------->ANAC58                               --------->At4g35610    --------->ANAC46                              <---------AGP1    --------->ANAC58                          <-------GAMYB<---------RAP2.6(3)  <---------ALFIN1                    <---------ANAC46   <---------LBD16                            - -----------HVH21            <---------ALFIN1<---------MYB46(3)                              <-------   tccttcacgcctcgtggagactgtgtttgcaacaccgatggcgaagacggttgatctgagccggaattttcaatcgaattggtcttaatcgtttcctttt  18484600                                                    --------->ANAC58                                                    --------->AtLEC2                                            --------->STY1(2)                                            <---------STY1(2)                                         ------>ZmHOX2a(2)            ------>ZmHOX2a(2)                                       <---------ARR14(2)            <------ZmHOX2a(2)                               --------->ANAC58     --------->bZIP60(2)                               --------->ANAC58--------->ANAC46      --------->GLK1(1)                   ------>ZmHOX2a(2)   --------->ARR11(3)            <---------GLK1(1)    --------->ARR11(3)                 <---------ARR11(3)    ------->TEIL --------->ANAC58<---------ARR11(3)    --------->ARR14(2)           ------>ZmHOX2a(1)--------->ARR14(2) --------->ANAC58     --------->ARR11(3)    <---------ARR11(3)           =====================================HOX2a_HOX2a         <---------ARR14(2)    <---------ARR14(2)   <---------GLK1(2)        <---------ARR14(2) --------->ANAC58     --------->ARR14(2)    <---------- -------->YAB1   --------->ARR11(3)    --------->ARR14(2)       <---------LBD16           --------->GLK1(2) ---DOF2   ===============HOX2a_HOX2a  <---------AGP1      <---------AHL20(2)            <---------CCA1(2)   gatcatattcttcctcatcgatcttcagagaattcgcaatggatctagcaagccatgccatttttttggggatctctcacaagtctctcgagtatctctc  18484700                                                                <---------TOE1(2)                                                             <---------DEAR3(1)                                                           <-----------HVH21                                                      <---------HSFC1(2)            --------->TOE2(3)               <---------DOF5.7(2)                    --------->HSFC1(2)           ----------->GT1             --------->DOF5.7(2)                  --------->ANAC55(2)              --------->ANAC55(2)            <----------DOF2                       --------->ANAC46                 --------->ANAC58         ------>NtERF2                            --------->ANAC58                 <---------ANAC55(2)        ------>NtERF2                             --------->ANAC58                 --------->ANAC58      --------->LBD16                             <---------ANAC55(2)              <---------ANAC46     --------->ANAC46       ----------->HVH21   --------->MYB52(1)                <-------TEIL    <---------LBD16         *TSS           <-----------GT1<---------DEAR3(1)   --------->At4g35610 -ARR10----------->HVH21    --------->WRKY12  <---------DAG2<------NtERF2     <---------------AtSPL8   tcttaatccgcgacctttaacgagacaccattgacgctaaatattcaaccttacgaaacgtcgtcgctggattagttaatgagctacgtaaaaatagccc  18484800                                                                           <---------ICU4                                                                           -------->HAHB4                                                                          --------->ICU4                                       ----------->HVH21               --------->AHL20(2)                                      --------->LBD16             <---------MYB52(1)                                     <---------ANAC58            <-------GAMYB      ---------->DOF2                <---------ANAC58       <---------HSFC1(2)                   ----  <------------CBF                  <---------LBD16  --------->AHL20(2)<---------AHL20(2)     -------   ataagattgaaagtccagcccatctaggggctagggtatgcgggacaccattcaatttaagaaacgtcgttgtttaattatgcaaatgggcttagtagct  18484900                <-----------ARR10           <-------TEIL                      <---------MYB52(1)        ----------->GT1                    <---------ZAT6                                 --------->bZIP60(1)       <---------------AtSPL8        <---------MYB46(3)                                   <---------bZIP60(1)       --------->DAG2                <------MYB83                                         --------->TGA1a       --------------->AtSPL8        <------MYB46(1)                                      --------->ANAC46 ------>DOF2    --------->ARR11(3)  --------->MYB59                        --------->ANAC58 -->At4g35610   <---------ARR11(3)  <---------AtMYB61 <-----------HVH21    --------->ANAC58   aaagcccataaggtacaatatctagcccatctataggtttggttactgttattctctgttacagagttttatatgtcaagacaaaaactctcacatcaca  18485000                                                             ----------->GT1                              --------->CCA1(2)              --------->ANAC58                             --------->ARR14(2)              --------->ANAC58                   --------->YAB1                        <------ZmHOX2a(1)                 --------->ANAC46                       <----------ID1                 --------->ANAC58               <---------------AGL15                 --------->ANAC58               --------------->AGL15                ------>MYB83 <---------ARR14(2)----------------->AGL2                   <---------ZAT6                ------>MYB46(1)                ----------------->AGL3             <---------YAB1       --------->ANAC46    ----------->ARR10   ----------------->AGL1           <---------AHL20(2) --   ctgtgttatacacaaacccactcaaaacagagatttgctcagactcatttccaaaaacaggacaagtaaaataagcctatgtttatttttgtgttaaaaa  18485100                             <---------CCA1(2)                         <-----------HVH21                    <-----------GT1                --------->ATHB12                      <---------ICU4                           <----- --------->GT1<---------WOX13(1)          <----------DOF2   ----------->RAV1(1)             <--------   acagtagaaattgttgaatgattcacttgtcaaatctcacatttcttttcaattgttcattacaacagtagtagttcagaacaatgtatggagacttttg  18485200  Previous    Next  AGI:  At3g49800.1    Description:  BSD domain-containing protein. similar to BSD domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G65910.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN77737.1); contains InterPro domain BSD (InterPro:IPR005607) Range:  from: 18482610    to: 18484728    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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