Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100      ---------->DOF2  --------->ANAC58  --------->ANAC58 -------->MYB52(1) ->O2                                       ---------->ID1 ->ANAC58                                  <-------GAMYB   <---------CCA1(2) ->ANAC46                                 <---------MYB46(3) ->ANAC55(1)                              --------->MYB52(2) ->bZIP60(2)                              <-----------RAV1(1)  <----------DOF2 ->TGA1a    ------>MYB83         >>>>>>>>>>>>>>>>>LFY   <-------TEIL                                < ->ANAC58   ------>MYB46(1)   <---------GLK1(1)   ---------->DOF2<-----------RAV1(1)        <--------   acaaacgaaagaccaaatgacttaacatttggaattgccattgtttgttgcataaagattcatctctttgttgtgttctctctcgtcttcttcagttagt  17952000                                                     <---------ANAC46                <---------YAB1                                                     <---------ANAC58              -------->HAHB4                                                     <---------ANAC58              --------->YAB1                <---------ZAT14                  <---------ZAT2  ---------->DOF2<--------HAHB4    --------->YAB1                               --------->At4g35610            <---------ICU4    <-----------GT1         <----------DOF2      --------->ZAT2<---------AHL20(2)  <---------ICU4 --------->YAB1<---------ANAC46            --------->MYB52(1)  --------->YAB1  --------->ICU4 ---------YAB1 <---------REM1(1)           ---------->DOF2     --------->AHL20(2) --------->ICU4    < -MYB52(1)  ------>ZmHOX2a(1)  --------->ATHB12  <---------At4g35610    <-----------RAV1(1)  --------   ctataataacaatcctggtgtagagagagactttgatttgataaataaaggagctgcttgtacaattaaaagctatgttgcataattatgaaatatcaaa  17952100                                         --------->ANAC58                                 <---------ARR11(3)                                 --------->ARR11(3)          --------->DAG2        <------------CBF            --------->MYB52(2)  --------->CCA1(1)    ----------->GT1<---------AtLEC2 ---------YAB1  ------------>CBF--------->RVE1(1)    <---------TOE2(3)            --------->ATHB12 ->YAB1<------ZmHOX2a(1) ---------->DOF2 --------->ANAC58   ---------->DOF2   --------->ZAT18   atacgataaggacttagttgcaattctcaaagaaatatctgaaacgcataattttaagttaaaaaagtgtgcatgaaatgtgaactattggaccttgtca  17952200                                      --------->ANAC58                                      --------->ANAC58                  <----------DOF2  ----------->TGA1                      <---------TOE2(3)         --------->MYB52(1)        ----------->HVH21                    --------->DAG2      --------->ANAC46           <---------ANAC58                   --------->TOE2(3)      --------->ANAC58           <---------ANAC58           ---------->DOF2        <----------DOF2      --------->ANAC58      <---------YAB1            ----------->GT1  ---------->DOF2        <<<<<<<    ---------->DOF2      --------->GLK1(2)     --------->ANAC46   <-----------------AGL1   <<<<<<<<<TBF1   --------->AHL20(2)   <---------GLK1(2)      <----------ID1--------->DAG2        <---------DAG2  <-   acaaattaaagcaacggtttctttgagattctcattcgtgacgctataaacgacaaatgtaataaagtatccataaaggaaacaactttattcttcttct  17952300                                                                --------->ANAC58          ------>ZmHOX2a(2)    --------->LBD16                  --------->ANAC58        <---------ARR11(3)    --------->LBD16               <---------ANAC46                   ------    <----------DOF2    <-----------GT1              ----------->GT1                     <---------WRKY38(1)  <---------DAG2  ------------>CBF      <---------TOE2(3)   <---------ANAC58           ------------>CBF <<TBF1 --------->ARR11(3)  ------>MYB83<---------TOE1(3)   <---------ANAC55(2)      ----------->GT1 --------ALFIN1<<<<<<<<<TBF1------>MYB46(1)  <-----------TBP<---------ANAC58    --------->AHL20(2) --   tccaccctttgatcttcttcttcaattacctccctgaaaattagggtttttgtaatgtgatttcgtaagaaaccaaaaaaaaaaaaatggtcaattccga  17952400                                                                                           <------NtERF2                                                                                           --------->At4g35610                                                                                           <---------At4g35610                                                                                       <---------ANAC55(2)                                                                                       --------->ANAC58                                                                               ======================                                                                       <----------DOF2 --------->ANAC58                                                                 --------->KAN4(2)     --------->ANAC46                                                              <---------ARR11(3)    <---------ATHB12       <---------At4g35610            ------>ZmHOX2a(2)     --------->ICU4     ------>ZmHOX2a(2)       --------->At4g35610          <---------ARR11(3)      <---------YAB1    ======================= --->LBD16                       <---------HSFB2a(2)   <---------At4g35610    <------ZmHOX2a(2)  <--- ------->ARR11(3)                --------->HSFB2a(2)<-------TEIL------>ZmHOX2a(2) --------->WOX13(1)   agaaattgcagatgggtttgagccaaaacctgtttctcgatcttattctggtgattcatctcatgatcgttctctttccgatctcaatcacgcagcggag  17952500            --------->TOE1(3)           --------->At4g35610              ---------->DOF2     <---------ZAT6                       ---------->DOF2    <---------WOX13(1)                  --------->ANAC58                                        <----   <---------ANAC58                     <---------YAB1                                         ------   <---------ANAC58                     --------->ANAC58                                      <------ ===HOX2a_HOX2a                         --------->ANAC55(2)       <---------ANAC58            ------- ===HOX2a_HOX2a               <---------AtLEC2 --------->At4g35610<---------ANAC58          --------- ---ZmHOX2a(1)     --------->GLK1(2)    <---------ANAC55(2)     <---------YAB1        <---------TOE2(3)   gacttgagtgataagcttaagaatgtgggtttgaatgaagttacgaaagagcagagtgagaagatgatgagtgtctctgagagtaatggaggtttagatt  17952600                                                                         <--------P                                 >>>>>>>>>TBF1                         <---------MYB46(3)                              >>>>>>>>>TBF1                            --------->MYB55(2)                            ------------------------>ANAC81           <---------AtMYB61 ---TEIL                   >>>>>>>>>TBF1                  <---------YAB1<-------GAMYB --->ARR14(1)          <------ZmHOX2a(1)                  <---------TOE1(3)<------MYB83 ---GLK1(2)         --------->YAB1                        <---------TOE2(3)<------MYB46(1) -->ARR11(1)       <---------ATHB12    >>>>>>>>>TBF1  <-------GAMYB   <---------YAB1 -->ARR10        --------->WOX13(1) >>>>>>>>>TBF1    <---------MYB46(3)--------->ATHB12         -----   cgaatgcagtagtcaccatcaatcaggaagaagaagaagaagaagaagacagagatggttatggttatggtgatggttggagcgagaacgagagtgagaa  17952700                                                                    ------>ZmHOX2a(2)                                                                    =============================HOX2a_HOX2a                   --------->At4g35610                            --------->ARR14(2)            ------>NtERF2                                         <---------ARR14(2)            -----        --------->ALFIN1    <---------KAN4(1)               <---------ARR14(2)                  <----  <---------ARR14(2)        --------->KAN4(1)               --------->ARR14(2)            ------>ZmHOX2a(1)  --------->ARR14(2)     <------ZmHOX2a(1)           --------->At4g35610             --------->YAB1  ------->TEIL   <------ZmHOX2a(1)                   --------->ZAT2<------ZmHOX2a(2)<---------ATHB12 <---------CCA1(2) <---------At4g35610               <---------ZAT2==============================HOX2a_HOX2a ---->GLK1(2) <-----------RAV1(2)<----------DOF2     <---------At4g35610          --------->WOX13(1)   tgtgtatccagtgaggccaggagcagaggattgttctttttatatgagaacagggagctgcaaattcggatccagttgcaaattcaatcatcctcttgcc  17952800                                                   --------->ARR14(2)                                                   <---------ARR11(3)                                                   <---------ARR14(2)                         -------                                                   --------->ARR11(3)                         <------        --------->ANAC46                          <------ZmHOX2a(1)                           <------        --------->ANAC58                        <---------TOE2(3)                            <-------        --------->ANAC58                        <---------TOE1(3)                 --------->ARR11(3) <---------HSFB2a(1)                      <---------ANAC46                        <---------ARR11(3) --------->HSFB2a(1)                     <------NtERF2                      <---------AHL20(2)------- --------->HSFC1(2)                      <---------At4g35610                <---------YAB1  --------- <---------HSFC1(2)                     <---------MYB46(3)          <---------ANAC58    <---------HSFB2a(2) ---->HSFB2a(2)                        --------->ALFIN1             <---------ANAC46    --------->HSFB2a(2) -----HSFB2a(2)     <----------DOF2 <---------TOE2(3)               <---------ANAC58------>ZmHOX2a(2)   agaaaattccaagtaaacttcactttcttatatggttttaggtggctgataaggatattggttcttaattgtgtgttttttattgatcttagggaagatt  17952900  Previous    Next  AGI:  At3g48440.1    Description:  zinc finger (CCCH-type) family protein. Identical to Putative zinc finger CCCH domain-containing protein ZFN-like 6 [Arabidopsis Thaliana] (GB:Q9STM4); similar to zinc finger (CCCH-type) family protein [Arabidopsis thaliana] (TAIR:AT5G63260.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64177.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571) Range:  from: 17952387    to: 17954561    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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