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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<-----------
ARR10
--------->
ARR14(2)
--------->
GLK1(2)
<---------
ARR14(2)
--------->
ARR11(3)
--------->
ARR14(2)
<---------
ZAT14
<---------
ARR11(1)
<-----------
HVH21
------->
TEIL
--------->
MYB46(3)
--------->
ANAC55(2)
<---------
CCA1(2)
>>>>>>>>>
RAP2.2
<---------
ANAC55(1)
--------->
YAB1
--------->
AHL20(2)
<---------
ANAC58
<---------
GLK1(2)
<---------
HSFB2a(2)
<---------
ANAC55(2)
<---------
ICU4
----------
DOF2
<---------
ARR11(3)
<------
ZmHOX2a(2)
----------->
ARR10
--------->
HSFB2a(1)
---->
ZmHOX2a(2)
--------->
ARR11(3)
<---------
ARR11(3)
--------->
ZAT14
<---------
ARR14(1)
----->
ARR11(3)
--------->
CCA1(1)
--------->
ARR11(3)
<---------
ZAT14
<---------
GLK1(2)
------
ARR11(3)
--------->
RVE1(1)
------->
GAMYB
<---------
ANAC46
<---------
ARR11(3)
<-
---
WOX13(1)
--------->
HSFB2a(2)
--------->
MYB52(1)
<---------
ANAC58
<---------
ARR14(2)
----
atctttatatgcttctataaatatctaaaacaacaatccaacggtggaaagatcacattgcgtgtcagtactgtagatactcatcaccgaatctttctcc
17193700
-------->
P
------>
MYB83
------>
MYB46(1)
--------->
MYB52(1)
--------->
MYB55(1)
<---------
ALFIN1
<---------
MYB55(2)
--------->
MYB46(3)
<---------
ABI4(2)
--------->
DEAR3(2)
--------->
PCF2
--------->
ZAT2
<---------
At4g35610
--------->
YAB1
<-----------
GT1
--------->
At4g35610
--------->
ANAC46
----------->
GT1
----------->
RAV1(2)
<---------
DAG2
<------
NtERF2
<---------
MYB52(1)
<---------
ZAT2
<---------
ARR14(2)
--------->
ANAC46
========================
<-----------
RAV1(2)
--------->
ARR14(2)
--------->
ANAC58
<-------
GAMYB
<-----------
GT1
------->
TEIL
<----------
DOF2
--------->
LBD16
<---------
DEAR3(2)
---------
DOF2
<------
NtERF2
<---------
ALFIN1
--------->
ANAC58
<------
MYB83
-->
ZmHOX2a(1)
<---------
SPL7
<---------
ZAT18
<---------
LBD16
<------
MYB46(1)
tcttttcactctccagctggccgaacccaccggttttgcccactttctctctaggcccgcaaacacaacttgctaagtcggtagtaatttactgaaaaac
17193800
--------->
ALFIN1
<-------
MYC3
------->
MYC3
------->
PIF5
------->
MYC4
<-------
MYC4
<-------
PIF5
<------
MYB83
<-------
MYC2
<------
MYB46(1)
------->
MYC2
----------->
GT1
--------->
ANAC46
--------->
MYB46(2)
--------->
PIF3(3)
--------------->
AGL15
<---------
PIF3(3)
<-----------------
AG
<---------
TGA1a
----------------->
AGL1
<---------
O2
----------------->
AG
<----------
DOF2
<-----------------
AGL1
=====================
bZIP_DOF
------->
TEIL
====================================
bZIP_DOF
---------->
ID1
>>>>>>>>>>
HY5
<---------
bZIP60(2)
<---------
bZIP60(2)
--------->
O2
<---------
ANAC58
<---------
O2
<-----------
GT1
<---------
ANAC55(1)
<---------
TGA1a
<-----------------
PIF3(1)
--------->
MYB59
<
<---------
ANAC58
--------->
TGA1a
--------->
TGA1a
<---------
YAB1
===================
bZIP_DOF
<---------
ANAC46
--------->
ICU4
<---------
ANAC58
=========================
bZIP_bZIP
----------->
GT1
----------->
HVH21
--------->
ANAC58
--------->
ANAC55(2)
------>
ZmHOX2a(2)
--------->
At4g35610
--------->
ANAC58
<---------
ANAC58
<---------
ARR11(3)
<---------
At4g35610
--------->
ANAC46
<---------
TGA1a
<---------
ATHB12
-
======================
MYC_MYB
<---------
ALFIN1
<---------
ANAC55(2)
--------->
WOX13(1)
<-
cctcacaaatagctgacttggctcttttcactccacgtggctccatcttacgtgcctagtttggtaatttcaatttcaatcacctagatcgtaactattg
17193900
<---------
ANAC55(1)
<---------
ANAC55(2)
--------->
ANAC55(2)
<---------
ANAC58
<---------
ANAC58
<---------
bZIP60(2)
<---------
TGA1a
<---------
DEAR3(2)
<---------
ANAC46
<------
MYB46(1)
<---------
O2
<------
MYB83
------>
ZmHOX2a(2)
===================
bZIP_DOF
<------
ZmHOX2a(2)
>>>>>>>>>>
HY5
<---------
MYB46(3)
--------->
CCA1(2)
--------->
O2
<---------
DEAR3(1)
<---------
ARR14(2)
----------->
STF1
<------
MYB46(1)
--------->
ARR14(2)
<------
<---------
TGA2(2)
<------
MYB83
<---------
RVE1(1)
-------
----------->
HVH21
--------->
MYB59
--------->
AHL20(1)
<---------
MYB59
----------->
TGA1
<---------
AtMYB61
<---------
CCA1(1)
<---------
ARR11(3)
--------
<---------
At4g35610
--------->
MYB46(2)
--------->
ARR11(3)
>>>>>>>>>
AtLHY
<---------
ZAT14
--------->
MYB111(1)
<---------
ARR11(3)
>>>>>>>>>
AtCCA1
--------->
ZAT14
<------
MYB83
<---------
ARR11(3)
--------->
ARR11(3)
<-------
--------->
ZAT18
<------
MYB46(1)
---------->
DOF2
--------->
AGP1
--------->
STY1(2)
---------
ANAC55(2)
<---------
MYB46(3)
<---------
AHL20(1)
--------->
RVE1(1)
--------
-------->
ANAC55(2)
--------->
ALFIN1
<---------
MYB52(1)
--------->
ARR11(3)
--------->
CCA1(1)
<---------
ALFIN1
------
TEIL
--------->
ICU4
---------->
DOF2
<---------
ORA47(1)
<---------
AGP1
<---------
At4g35610
atacataatgtgaactgatgacgtgttgaaaagagattggttaggtcggtttgaaaagatatttagaagatctaaaatatctagctaactcgtccacgtt
17194000
--------->
HSFB2a(2)
--------->
LBD16
<----------
DOF2
<---------
DAG2
<------------
CBF
<---------
AHL20(2)
------>
ZmHOX2a(1)
--------->
AHL20(2)
<---------
HSFB2a(2)
--------->
AHL20(2)
--------------->
AGL15
--------->
YAB1
<---------
LBD16
--
-
MYC3
<---------
AHL20(2)
<-
>
MYC3
<---------
AHL20(1)
--
->
O2
--------->
AHL20(1)
>>>>>>>>>>
GT-3b
<-----------
ARR10
--------->
HSFB2a(2)
--
O2
--------->
ARR11(3)
----------->
GT1
--------->
GLK1(2)
<------------
CBF
---
->
ANAC46
<---------
ZAT18
---------->
DOF2
----------->
GT1
<----------
DOF2
*
TSS
<---------
HSFB2a(2)
ggaattaaaatattgcgctttttcctggaaaagaaaaatataaaacaagtgataatcttctctttttcgaaatt
gtttcacttctgaaaaaaaaaaaaaa
17194100
<---------
At4g35610
<---------
ANAC58
<---------
ANAC58
<---------
YAB1
------->
AHL20(2)
------>
MYB83
<---------
ARR14(2)
--------
AHL20(2)
------>
MYB46(1)
--------->
ARR14(2)
<---------
At4g35610
------->
AHL20(1)
<---------
MYB59
------>
ZmHOX2a(2)
--------->
At4g35610
------>
AHL20(2)
<---------
ICU4
<------
ZmHOX2a(2)
<-----------
GT1
--------->
At4g35610
aaaaattgtttgctcatcatcttcacaaaccaaacttctcttcttctccgatctcagatttgaatttttatcgattttgagcttcgaagagctcaatctc
17194200
--------->
CCA1(2)
<---------
ARR14(2)
--------->
ARR14(2)
<---------
ANAC46
--------->
ATERF1(1)
<------
NtERF2
------>
NtERF2
<---------
ATERF1(1)
----------->
HVH21
--------->
DEAR3(1)
<---------
DEAR3(1)
--------->
ATERF1(1)
--------->
LBD16
------>
NtERF2
<---------
HSFC1(1)
<---------
LBD16
--------->
HSFC1(1)
<---------
LBD16
--------->
HSFB2a(2)
<---------------
AtSPL8
<---------
HSFC1(2)
<---------
YAB1
<---------
HSFB2a(2)
<------
ZmHOX2a(1)
--------->
HSFC1(2)
<---------
GLK1(1)
taactgaatttcgagaaattagagagtttgaa
atgggagaggaagtacaaatgagcgattacgatgtttccggcgacggagatagggtttctgaatggga
17194300
<------
ZmHOX2a(2)
--------->
CCA1(2)
<---------
ARR11(3)
--------->
AGP1
<---------
ARR14(2)
--------->
ARR14(2)
--------->
ARR14(3)
<----
<---------
ARR14(3)
-----
<---------
AGP1
<-----
--------->
ARR11(3)
<---------
ANAC58
--------
----------->
HVH21
<---------
ANAC58
--------
--------->
DEAR3(2)
<---------
DEAR3(1)
<-------
------>
MYB46(1)
--------->
ATERF1(1)
--------->
GLK1(2)
------>
MYB83
------>
ZmHOX2a(2)
--------->
ARR14(2)
----------
--------->
ANAC58
<-----------
GT1
<---------
ARR14(2)
<---------
LBD16
----
--------->
ANAC58
<----------
DOF2
--------->
ANAC46
<---------
ANAC46
--------->
LBD16
--------->
ANAC46
<---------
CCA1(2)
<-----------------
AGL1
--------->
MYB52(1)
gatgggattaccaagcgacgaagatctagcatctctttcttactctctgattccaccgaatttggcgatggcgtttagtatcacaccggagagaagccgt
17194400
------>
ZmHOX2a(2)
<---------
AGP1
--------->
ARR11(3)
--------->
ANAC55(2)
----------->
GT1
<---------
O2
<------
ZmHOX2a(1)
--------->
O2
<---------
TOE2(3)
<---------
ANAC58
=====
<-----------
RAV1(2)
<---------
ANAC58
<---------
bZIP60(2)
-----
SPL1(1)
---------->
ID1
<---------
ARR14(2)
<---------
ANAC58
---->
SPL1(1)
<---------
TGA1a
--------->
ARR14(2)
<---------
ANAC58
----
SPL7
--------->
O2
<---------
ARR11(3)
<---------
ANAC46
------->
AtSPL8
--------->
ATERF1(1)
--------->
ALFIN1
<---------
ICU4
==
------->
AtSPL3
<---------
ATERF1(1)
<---------
ANAC46
--------->
YAB1
<-
--------
AtSPL3
<---------
At4g35610
<---------
DEAR3(2)
<------
NtERF2
=====
-------->
SPL14
<---------
ANAC58
<---------
O2
<---------
MYB46(3)
<---------
DEAR3(1)
<----
----->
SPL7
<---------
ANAC58
--------->
TGA1a
<---------
CCA1(2)
<-----------
HVH21
--------->
ALFIN1
acgattcaggatgtgaatcgtgcatcggagacgacgctctcgtcgctacgtggtggatcttcaggtccaaatacctcgtcgtcgaataataacgtggagg
17194500
============
<---------
LBD16
=============
<------
ZmHOX2a(2)
----------->
ARR10
--------->
ALFIN1
<---------
ANAC46
--------->
ALFIN1
<------
NtERF2
------>
ZmHOX2a(2)
<---------
ANAC46
=================
HOX2a_HOX2a
<---------
DREB2C(2)
<---------
ARR14(2)
<---------
DEAR3(1)
<---------
AGP1
------>
ZmHOX2a(2)
<------
NtERF2
--------->
ARR11(3)
--------->
ATERF1(1)
============================
HOX2a_HOX2a
<---------
ABI4(1)
<-
<------
ZmHOX2a(2)
<---------
ARR14(2)
<---------
DEAR3(1)
<----
<---------
ARR14(2)
--------->
ARR14(2)
<---------
DREB2C(2)
--------
--------->
ARR14(2)
<---------
HSFB2a(2)
<---------
DEAR3(1)
<-------
<---------
ARR11(3)
--------->
HSFB2a(2)
---------->
DOF2
--------->
MYB52(1)
------>
ZmHOX2a(2)
--------->
ARR11(3)
------>
ZmHOX2a(1)
--------->
ANAC58
----------->
HVH21
<---------
ARR14(2)
=====================
HOX2a_HOX2a
<---------
GLK1(2)
----------->
TGA1
--------->
TCP16(1)
=====================
HOX2a_HOX2a
--------->
ARR14(2)
<---------
At4g35610
--------->
TCP20
-----
ZmHOX2a(1)
<---------
RAP2.6(3)
--------->
ANAC58
--------->
At4g35610
--------->
ARR14(2)
==========
HOX2a_HOX2a
<---------
LBD16
---------->
DOF2
--------->
ALFIN1
------>
NtERF2
--------->
LBD16
--
ZmHOX2a(1)
--------->
ARR14(2)
<---------
ARR14(2)
--------->
MYB52(1)
--------->
ALFIN1
<-------
aggaagatcgagttggatctagcagtcctggatcggattcgaagaagcaaaagacatcaaacggtgatggagatgacggtggcggtgtggatccggattc
17194600
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AGI:
At3g46640.1
Description:
PCL1 (PHYTOCLOCK 1); DNA binding / transcription factor. similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT5G59570.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN81044.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21613.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding (InterPro:IPR014778); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447)
Range:
from: 17194075
to: 17195449
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
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