Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100               <---------HSFC1(2) --------->AtLEC2 --------ANAC58 --------ANAC58                                                 <-----------GT1 ---->ARR11(3)                                               ----------->GT1 ---->ARR14(2)   <---------ANAC46                           --------->DAG2 -----ARR14(2)  --------------->AtSPL8                     ---------->DOF2               <-------TEIL -----ARR11(3)  <-------TEIL<---------ICU4           <------ZmHOX2a(1)          <----------DOF2 ---->ARR10  --------->HSFC1(2)                  ------>ZmHOX2a(1)           <---------ARR11(3)    <- --------------WRI1        <---------ATHB12    ----------->RAV1(2)           --------->ARR11(3) -----   tacttgcaaacaagtagcttcgtacataaatcattcccaaaattcaatctcctgaggaagaaaaagttacaaacctcgaaatctttttgcatacatcaac  16339000                                            <------ZmHOX2a(2)                               --------->ARR11(3)                            <---------TOE2(3) <---------------AtSPL8                           --------->YAB1  <---------ARR11(3)                         <---------WOX13(1)<---------ARR14(2)      --------->YAB1   <---------MYB46(3) <---------At4g35610         <---------ANAC58     ----------->GT1   --------->ATHB12<---------At4g35610            <---------ANAC58     <---------ZAT6   <---------YAB1--------->At4g35610             <-----------GT1                <-  <------ZmHOX2a(1)<---------ANAC46 <---------At4g35610             <---------AHL20(2)    ------->TEIL ----------RAV1(2)--------->SPL7   <-----------RAV1(1)  ---------->DOF2                <---------ATHB12 ---->ANAC46  <---------LBD16<---------YAB1--------->ARR11(3) <----------DOF2          --------->ICU4   accaggagtgataatatcgggacgttgattgatgattttgctgcagatcatgtacaaagaaaggctttatttacttgaacgattatgcaatgaatgtttt  16339100         <-------GAMYB        <-----------RAV1(1)                                    <------ZmHOX2a(1)   --------->HSFB2a(1)                                  --------->AHL20(2)   <---------HSFB2a(1)                                  <---------AHL20(2) <------ZmHOX2a(1)  <---------MYB52(1)            <---------At4g35610                    ----------->GT1 --------TOE2(3)------>ZmHOX2a(1)           <----------DOF2  --------->MYB59--------->YAB1   gaaggatgttctgttgtcctctgttttttttagttgtcgatgttctcttttcatcagattaattaggaatcgtttttatcacaactaagaaatgtaattt  16339200                                                                               <---------ANAC55(2)                                                                               --------->ANAC55(1)                                                                               --------->ANAC55(2)                                                                              <-------TEIL                                                                            <---------ARR14(2)                                                                            --------->ARR14(2)                                                                        <---------ZAT2                                                                        --------->At4g35610                                                                   <------NtERF2                                                                  ------>NtERF2<---------ANAC55(1)                                                                  <---------ATERF1(1)                                                                 <---------RAP2.6(2)                                                                 <---------ATERF1(2)                                                                 --------->ATERF1(2)                                                                 --------->DEAR3(1)                                                                 --------->RAP2.6(2)                                                 --------->HSFB2a(2)    --------->ZAT2             --            <---------AHL20(2)         <---------ZAT14          --------->DEAR3(2)<---------ARR14(2)           <---------AHL20(2)      --------->ATHB12             --------->ATERF1(1)    ---------->DOF2           --------->AHL20(2)     <---------YAB1 <---------HSFB2a(2)    <---------At4g35610        <-  ----------->GT1         ------>ZmHOX2a(1)   <---------PCF2   <---------At4g35610--------->ARR14(2)   tcttaagttaaaatttttttttagggtccttctctcgtgattgtactgggtccagaaattgtttgagccggccctgctgatacgtattcgaaaggagaag  16339300                            <---------TGA1a                            =========================MYC_MYB                            <---------O2                                                     <-------                     <---------ZAT14                                                        ------>ZmHOX2a(2)                    <---------ANAC46                                                       <------ZmHOX2a(2)                    <---------REM1(1)                   ------->GAMYB                     --------->ARR11(3)                  <---------ANAC58                      --------->ANAC46              --------->ANAC58                  <---------ANAC58               <----------ID1                       --------->ANAC46                  <---------ANAC46               --------->ANAC58                     --------->ANAC55(2)                  <------MYB46(1)                --------->ANAC58                     --------->ANAC58                  <------MYB83                <---------MYB52(1)             <------ZmHOX2a(1)                 <---------AtMYB61           <-------GAMYB                   ======================HOX2a_HOX2a                 --------->MYB111(1)         <-----------HVH21               =====================HOX2a_HOX2a   <---------At4g35610    --------->CCA1(2) --------->ANAC46             ---------->DOF2  <---------ARR11(3) ------->ALFIN1  --------->MYB46(2)      ------>ZmHOX2a(2)   --------->ARR14(2)      <---------LBD16 --------MYB52(1)<---------MYB46(3)     <---------GLK1(1)    <---------ARR14(2)     <-----------GT1   cgttgggctgatacttggtttggtgtagagacgagagcatcgatctccgttacgacaaacgccgattttgaagtagaaaggacaattcacgcgatctttc  16339400       <---------ARR14(2)                               --------->ANAC55(1)       --------->ARR14(2)                               --------->ANAC55(2)      <---------CCA1(2)                                 <---------ANAC55(2)     --------->LBD16                       <---------------AGL15    <---------ANAC58                       --------------->AGL15    <---------ANAC55(2)                    <---------DAG2                               <------MYB46(1)    <---------ANAC46                       <----------DOF2                              <------MYB83    <---------ANAC55(1)                   <---------ANAC58            <<<<<<<<<TBF1    <---------AtMYB61    --------->ANAC55(2)                   <---------ANAC58      <----------DOF2        --------->MYB111(1)    <---------ANAC58                  <---------MYB52(1)--------->ANAC46               --------->MYB59 <---------MYB52(1)                 <---------YAB1      --------->ANAC58               --------->MYB46(2) ---DOF2              --------->ZAT18 <------------CBF  --------->ANAC58              <--------P   tccgttccgtatattgacgctaagtgctcgaccatcttccgattgctttttgaagaacacgaaactcttttcttcttcttggactagggtaggtctctct  16339500                                                                                     --------->TOE2(3)                                                                                     ------->GAMYB                                                                                    --------->MYB46(3)                                                                                    <---------MYB55(2)                                                     <-----------GT1               ------>MYB46(1)                                                <----------DOF2                    ------>MYB83                                               <---------DAG2                --------->WOX13(1)    <-                                            <-----------GT1                ------------>CBF      <<<<   <---------ANAC58                 <---------TOE2(3)<---------At5g28300  <-----------GT1      ------   <---------ANAC58------->TEIL --------->CCA1(2)   <-----------GT1<-----------GT1 -------->P  <-----   ctgatacttgctatgcctatggatgtttcaagagatttaagtttatttacctttttaccccttctgttttaactattttcaatccaaccacaaacttatg  16339600                                                                              --------->ANAC46                                                                          --------->SPL7                                                                    --------->MYB52(1) <-----------HVH21 --------AHL20(2)     <---------At4g35610                         --------->ANAC58--------->ZAT14  -- <<<<<MYB98           --------->At4g35610                         --------->ANAC58<---------ZAT14  <- ----->GT1       <------------CBF       ----------->TBP     --------->At4g35610  --------->MYB52(1)-- ----YAB1  ---------->DOF2         --------->GLK1(2)        <---------At4g35610  ----------->RAV1(1)   ttaaatttggccaaaatgcgattgggctgaagcccataatctatataagtgaagaagacgagcgctgcaagaacggttcgacacaacagtgtcagtgcta  16339700                             <---------AtMYB61                <---------ANAC58                           <----------DOF2                    <---------ANAC58                          <---------ANAC46                    <-------GAMYB                          <---------ANAC58                   <------MYB46(1)       --------->MYB59 <---------MYB52(1)                    <---------MYB46(3)            --------->ZAT14      <-----------RAV1(2) <---------ANAC58           --------->YAB1                        <---------ZAT14     <---------MYB52(1)---------->ID1               <---------YAB1                         <---------ZAT18    <-----------HVH21 <-------GAMYB               <----------DOF2       ------------>CBF   --------->ZAT18 ------->ZAT14       --------->MYB52(2)    <----------DOF2   <------MYB83      <---------ANAC58   <-- --------ZAT14       <---------ANAC58 ------>ZmHOX2a(1)     <---------AtMYB61  <---------ANAC58   <-- ------->ZAT18       <---------ANAC58--------->TOE2(3)      --------->MYB59    <---------ANAC46   <--   gtgaacagtcaggttatagggtttcgttgctttggtcgtccttaactttaggctttgatagtttggttgtgaagttcaatggggtatgagaagttcactt  16339800                                                                  <------NtERF2                                                                 --------------->AGL15                                                                <-----------------AGL2                                                                <-----------------AGL1                                                               <------NtERF2                                                              <---------MYB46(3)                                                              --------->ABI4(2)                                                              --------->MYB55(2)                                                              <---------ATERF1(1)                                                              ------>NtERF2        <---------ICU4                                --------->DOF5.7(2)        <---------GLK1(2)                  <---------YAB1    <---------DEAR3(1)      <---------TOE2(3)              --------->AHL20(2) <---------DOF5.7(2)                      <--- -------ANAC46               --------------->AtSPL8<-------TEIL--------->At4g35610<----------ID1 ---- -------ANAC58     <----------DOF2 --------->TOE2(3)  <---------MYB52(1)----------->GT1         <---- -------ANAC58    <---------ICU4 <-------TEIL  --------->AHL20(2)<---------------AGL15     ----------   gggtgattaagaatttctcatctttgcaatctaagtacattaattctgataaattcgttatcggtggctgcaaatggtaagaagaagacaagtttgttat  16339900  Previous    Next  AGI:  At3g44785.1    Description:  U2AF splicing factor subunit, putative / U2 auxiliary factor 38 kDa subunit, putative. similar to ATU2AF35B, RNA binding [Arabidopsis thaliana] (TAIR:AT5G42820.1); similar to ATU2AF35B, RNA binding [Arabidopsis thaliana] (TAIR:AT5G42820.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO15975.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571); contains InterPro domain U2 auxiliary factor small subunit; (InterPro:IPR009145) Range:  from: 16339208    to: 16339435    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g44790.1    Description:  meprin and TRAF homology domain-containing protein / MATH domain-containing protein. similar to meprin and TRAF homology domain-containing protein / MATH domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G44800.1); similar to MATH domain containing protein [Brassica oleracea] (GB:ABD65138.1); contains InterPro domain MATH (InterPro:IPR002083); contains InterPro domain TRAF-like (InterPro:IPR008974) Range:  from: 16339779    to: 16341252    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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