Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                       --------->ICU4                    --------->GLK1(2)                                            <------------AtMYB77                    <---------ARR11(3)                           --------->ARR14(2)   <---------bZIP60(1)                 --------->ARR11(3)                           <---------ARR14(2)   <---------ETT(2)                   --------->YAB1                           --------->ARR11(3)   <---------ANAC46                  <---------YAB1  ---                    ---------->DOF2      --------->ICU4  <-------TEIL      --------->ANAC58       <--         <-----------HVH21 <---------ARR11(3)------->GAMYB                 --------->ANAC58       <--   tagaaaaacctagtcagagaatgaaagcatatattcaaatgtcataactgtcgtcaagattcatggtgattttgcacaagtaccatgatattctgaattt  11481800                                                                <---------WRKY18(1)                                                               ----------->HVH21      ----------->GT1                                        --------->ANAC55(2) ------------>AGL15             <---------LBD16       --------->YAB1                        <-------- -------------AGL15  ------>MYB46(1)               <---------REM1(2)         --------->MYB52(1) -------YAB1         ------>MYB83     --------->ATERF1(1)    <---------ANAC55(2)      ------->TEIL <-   ctgatagaaggaaacatgaaacctacagatggactctggagcatcccatactctactcagaatacttgacccccttaaacaactgatgcatcttcttttt  11481900                         <---------At4g35610                      <---------ANAC58                                                          <----                      <---------ANAC58                                                         <-----  <----------DOF2    --------->STY1(2)               <---------At4g35610                       <----- --DOF2              <---------STY1(2)              <---------TOE1(3)      <---------WOX13(1) ------- ----------GT1   --------->STY1(2)         ------>ZmHOX2a(2)            <---------YAB1      <--------   tatacttttcacagacactatctagcttgctgatgtttcaattgatctattcttaagcttattcaaatgccattctaattgaattagagaagagattgat  11482000                                                        <---------YAB1                                                <---------------AGL15   --------->ZAT6                    ---------->DOF2    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) -----WOX13(1)                --------->YAB1    --------------->AGL15            --------->LBD16 ----ANAC58                --------->YAB1    --------->ARR11(3)                 --------->HSFB2a(2) ----ANAC58               --------->AHL20(2) <---------ARR11(3)                 <---------HSFB2a(2) -->ATHB12                <---------AHL20(2)--------->RVE1(1)                 <---------ZAT18 -WOX13(1)       <---------------AtSPL8     --------->CCA1(1) xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   -   tgctaacacaattccagttcaagtacaatttataatcttcaaagaaatatctaatattagcatagagcagaaattgtctgtgcccgaagaaaacagtatc  11482100                                                                           <---------ANAC55(2)                                                                           --------->ANAC46                                                                           --------->ANAC58                                                                      <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                    --------->ANAC58                                                                    --------->ANAC58                                                                   ------->GAMYB                                                              --------->At4g35610                                             -------->P       <------NtERF2--------->ANAC58                                            <-----------GT1  --------->ANAC58                                        --------->ARR11(3)   --------->ANAC46          --------->YAB1                <---------ARR11(3)   ------>NtERF2<---------LBD16           - <---------AHL20(1)                  --------->YAB1         --------->ATERF1(2)           <xxxxxxxxxx --------->ARR11(3)            ----------->GT1              <---------ATERF1(2)           <---------At4g35610 --------->AHL20(1)           <---------TOE2(3) <----------DOF2 ----------->RAV1(1)       --------->At4g35610 -------->YAB1                <---------TOE1(3)<---------DAG2--------->ANAC58xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   aaaaatattgaataatagtagctatattagttaaggtaataagaacttaccttttgaaaatgccagcaacaggcactacggaagacatactcagttgcag  11482200                                       --------->ZAT2                                    --------->ZAT14                                    --------->ZAT18                            *TSS    <---------ZAT14                          <---------TOE2(2)   ------>MYB83             --------->ZAT6                           <---------YAB1   ------>MYB46(1)       <---------ICU4<---------ZAT2            <-----------TGA1                   < ------->GAMYB           --------->YAB1<---------At4g35610   <---------GLK1(1)           ---------->DOF2 --------->AtMYB61      <---------YAB1 --------->At4g35610   --------->GLK1(1)        --------->ANAC58 -------->MYB46(3)  <---------DAG2  <---------ZAT18         --------->ARR11(3)        --------->ANAC58 xxxxxxxxxxxxsmallRNA(si3) <---------YAB1   <----------DOF2 <---------ARR11(3)----------->GT1      --   taaccatcccatgctctctctcccttatcatcactaagtgcagctgctttctcaagtctagagatatcgtcatcatacataggttattaagcaaagtagt  11482300                              ------>ZmHOX2a(2)            --------->O2                            --------->ARR11(3)             --------->TGA1a                            <---------ARR11(3)             <---------O2                       <-------TEIL                        <---------bZIP60(2)                    <---------ZAT2                         <---------ANAC46         <----------DOF2--------->REM1(1)                  <---------TGA1a   <---------ATHB12 --------->ZAT2              =====================bZIP_DOF --------->WOX13(1) <---------At4g35610         <----------DOF2 <<<<<<<<WRKY18     --------->At4g35610      <---------AHL20(2)    --------->GLK1(2)  ----------->HVH21 ---------->CBF    --------->ANAC46       ------->TEIL<-----------GT1            <-----------RAV1(1)   cgtcaatgagtctttggtttccagctacatgatctctcttgatgtattttcttttgttacgacgtggataatcttcttcaattttgttgcgacgctctct  11482400                                                                              --------->ATHB12                                                                             <-------TEIL                                                                             ------>ZmHOX2a(2)                                                                            <------ZmHOX2a(2)                                                                           <---------ARR14(2)                                                                           ------->TEIL                <-----------GT1                                         <---------WOX13(1)            <---------ARR11(3)                               ----------->GT1>>>>>>>>>>>>>>>>>LFY            --------->AHL20(1)                            ---------->DOF2  --------->ARR14(2)            <---------AHL20(1)                <---------At4g35610    <---------YAB1            --------->ARR11(3)                --------->At4g35610 --------->GLK1(2)         --------->YAB1               <----------DOF2     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <--        <---------YAB1        <---------TOE2(3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<---------AHL20(2)   aaaccggtttatgatatatttctcttcaatttgagattgtcttttgtaagcttcaatatcgaaaggaaattctgatggatccattggattttttttagta  11482500                                                                                        <---------ARR14(2)                                                                                       ==============                                                                                       ==============                                                                                       <------ZmHOX2a(1)                                                                            --------->ATHB12                                                              <---------MYB46(3)       <xxxxxxxxxxxxx                                                              ----------->GT1        <---------TOE1(3)                                                             --------->ALFIN1        <---------TOE2(3)                                                    --------->AHL20(2)      --------->YAB1                                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)--------->ARR14(2)              <---------AHL20(2)              --------->YAB1 <---------AtMYB61      <xxxxxxxxxxxxxxxx       <---------MYB46(3)                 <---------------AGL15            <---------YAB1   <---------YAB1                      <-----------GT1       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)---- -------At4g35610          ----------->GT1--------------->AGL15    ---------->DOF2 --------->CCA1(2)   agatgatgtttgttatattatttcatcaatagaaaaatgagtttccatttataaaaaaatcgagtggttgaaagagaatgataagataaggatttgatga  11482600                 <xxxxxxxxxxxxxxxxsmallRNA(i)                ====================HOX2a_HOX2a                <------ZmHOX2a(2)                --------->CCA1(2)               --------->ARR11(3)               <---------ARR11(3)         <-------GAMYB         <------ZmHOX2a(2)        <---------MYB46(3)     ===============================HOX2a_HOX2a       --------->ALFIN1       --------->ARR11(3)  ==================================HOX2a_HOX2a               --------->GLK1(2)  <------ZmHOX2a(2)           <---------ARR11(3)           ----------->ARR10 --------->ARR11(3)----------->RAV1(1)                 <------ZmHOX2a(1)           --------->ANAC58 <---------ARR11(3)--------->MYB52(1)                 --------->ICU4               --------->ANAC58 ======================HOX2a_HOX2a   ----------->GT1 <---------TOE1(3)             <----------ID1 ========HOX2a_HOX2a         --------->YAB1          <---------TOE2(3)           ---------->DOF2 xxxxxxxxsmallRNA(fl3)     <---------TOE2(3)       --------->CCA1(2)         --------->TOE2(3) xxxxxxxsmallRNA(l2)       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)             --------->YAB1     <----- ------>DOF2   --------->AGP1<------ZmHOX2a(1)---------->DOF2<---------GLK1(2)   xxxxxxxxxxxxxxxxxxxx   aaagatcatgtggttgagatccaacagataaggatcatgtggtaaactaaaagataaggattagattctaagtttctaacataaaaagccaaaattgatg  11482700  Previous    Next  AGI:  At3g29639.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G11430.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN64736.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44119.1); contains InterPro domain Spen paralogue and orthologue C-terminal (InterPro:IPR012921) Range:  from: 11481211    to: 11482228    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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