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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                                                      <---------ARR11(3)
                                                 <---------TOE2(3)             --------->At4g35610
                                               <---------ICU4                 ----------->RAV1(1)
                    --------->ANAC46           --------->YAB1              --------->ANAC46
              <---------ICU4                --------->WOX13(1)             --------->ANAC58
-------GT1   <---------YAB1               <---------ATHB12  --------->LBD16--------->ANAC58
->ARR14(2)   --------->ICU4         --------->ZAT6--------->ZAT6         ---------->DOF2           <
--ARR14(2)<-------TEIL   --------->MYB46(3)--------->AHL20(2)  --------->GLK1(1)      --------->ARR11(3)
 
actatcgattaagttcataattcccacaacaactcgaaaacactaatcaattaagactaactccagaattctaactacaagcagcataagaacttagggt  10262800
                       --------->ARR11(3)                                                      <----
                       <---------ARR11(3)       <---------ARR11(3)      <---------YAB1         -----
                      --------->GLK1(1)         --------->ARR11(3)    --------->YAB1        ------>ZmHOX2a(1)
                      <---------GLK1(1)       <---------AHL20(2)     --------->ICU4 <---------MYB52(1)
    ------->TEIL  <---------HSFB2a(2)        --------->AHL20(2)      --------->KAN4(1)     <--------
 --------->ANAC46 --------->HSFB2a(2)   ----------->GT1             <---------KAN4(2)<---------ZAT18
-----------GT1 <----------DOF2       ---------->DOF2     <---------GLK1(2)  ----------->HVH21  <----
 
ttatacgaacctagagagctttcagaaatcttcaaaaaaaaaaaggaaataaatcttacaggttctcttggaataatcagtgactctgttcgctcctctt  10262900
                               ------>NtERF2
                              --------->DEAR3(1)
                            ------>NtERF2
                         ------>NtERF2
                        ----------->HVH21
                        --------->DEAR3(1)
                       <------NtERF2
                       --------->DEAR3(2)
                       --------->ATERF1(1)
                      <---------ATERF1(1)
                      ------>NtERF2
                     --------->ARR14(2)
                     <---------ARR14(2)
                   <---------RAP2.3(1)
                  <---------RAP2.6(2)             <<<<<<<<<<<<<<<<<LFY           <----------ID1
      --------->YAB1<---------At4g35610       --------->AHL20(2)            --------->ARR11(3)
-----ZAT14     <---------ARR14(2)       <---------MYB59                   --------->ANAC58
---->ZAT14     --------->ARR14(2)       --------->TOE1(3)                 --------->ANAC58
-ALFIN1   --------->GLK1(2)--------->DEAR3(1)--------->AHL20(2)      <---------LBD16            <---
-----REM1(2)<xxxxxxxxxxxxxxxxsmallRNA(i)--------->TOE2(3)       <---------HSFB2a(1)            <----
 
cacagacaaacaaaatcggtttcggctccgacgacgacgaaaacctaaataaaaaacaatggatggaacatttggggaagaaattggacaaaattggagg  10263000
                                            <------NtERF2
                                           ------>NtERF2
                                          --------->RAP2.3(3)
                                          --------->RAP2.3(2)
                                          --------->DEAR3(1)
                                          --------->RRTF1(3)
                                          <---------ANAC46
                                         --------->RRTF1(1)
                                         <------NtERF2
                                         --------->ATERF1(1)
                                         --------->DEAR4(2)
                                         --------->ERF1
                            <---------ARR11(3)    --------->ARR14(2)
                            --------->ARR11(3)    <---------ARR14(2)
                          ----------->ARR10<-----------HVH21
                         <------NtERF2  <---------ATERF1(1)
                        --------->LBD16 ------>NtERF2
                <<<<<<<<<GATA-1       <------NtERF2
                <<<<<<<<<GATA-3       <---------ABI4(2)
                <<<<<<<<<GATA-4       --------->ATERF1(1)
        <---------YAB1 <---------DEAR3(1)--------->RAP2.3(1)                   <------NtERF2
      --------->YAB1<---------DEAR3(1)------>NtERF2 <---------LBD16           ------>NtERF2
     <---------ATHB12  <---------ANAC46<---------DEAR3(1)                    <---------DEAR3(1)
   --------->WOX13(1) <---------LBD16<---------RAP2.3(1)                     --------->DEAR3(1)
  <<<<<<<<<WRKY18   --------->ANAC46 --------->DEAR3(1)                    <-----------HVH21
--------->TOE2(3)  <---------LBD16   <---------ATERF1(1)             --------->GLK1(2)
------ARR14(2)  <<<<<<<<<GATA-2     <---------RAP2.3(2)          <------ZmHOX2a(1)<---------MYB52(1)
--ZmHOX2a(1)   --------->ARR14(2)   <---------DEAR3(1)    --------->ICU4  --------->ANAC46
 
aatcgtcaatgaagattgaatccacggcggagatttttggccgcgccgtcgaggtttcggaattagtaggagaatcaacgtcgccgatagcgactggtct  10263100
                  <---------ANAC46
                <---------At4g35610                                                              ---
                <---------ZAT2                                                                 -----
                --------->ZAT2                                                              --------
                --------->At4g35610                                                     --------->ZAT6
         <XXXXXXXXXXXXXXXXXXXXMIR396A                               <----------DOF2 <---------MYB52(2)
        <XXXXXXXXXXXXXXXXXXXXMIR396B                               <---------ANAC58--------->ANAC58
    <---------TOE2(3)            ---------->DOF2                   <---------ANAC58--------->ANAC46
    <---------TOE1(3)      --------->At4g35610                --------->ALFIN1     --------->ANAC58
 <---------MYB52(1)        <---------At4g35610            ---------->DOF2  <---------YAB1   --------
 
cgtcgttagggtttgatggagctgtggaatagctgagaaagagagagagagggtagagagagaaagaggggcttatttgttattgcaagtaacacaagga  10263200
    <------ZmHOX2a(1)                                              <------------CBF    <---------TOE2(3)
------>DAG2                               --------->ANAC46    <-----------GT1        <---------AHL20(2)
----->DOF2                               -------->P     <---------AHL20(2)       --------->AHL20(2)
->ANAC58                             <-----------GT1    --------->AHL20(2)       <---------AHL20(2)
->ANAC58  *TSS                  <---------AHL20(2)    <----------DOF2    ------------>CBF       <---
 
aaggcgaggaagacagaaactagactggaaaatgttttattttctaccccaaaaattctttaattttacaaattgacccaatatttatttaagtttacaa  10263300
                                           <---------AHL20(2)
                                          --------->YAB1
                              <---------YAB1
                           --------->AHL20(1)
                           <---------AHL20(1)
                           <---------AHL20(2)
                     --------->YAB1      <---------YAB1         --------------------->WRI1
                  <---------ARR14(2)   --------->YAB1           <----------DOF2  <---------ZAT14
               <---------ANAC58        --------->AHL20(2)    --------->LBD16     --------->ZAT14
               <---------ANAC46  <---------YAB1            --------->SPL7    ------>NtERF2
               <---------ANAC58--------->YAB1              <---------LBD16  --------->ZAT18
  ------------>CBF--------->ARR14(2)  --------->ICU4     <---------SPL7     <---------ZAT18 --------
---------CBF<----------DOF2--------->AHL20(2)   --------->AHL20(2)     ---------->DOF2 <---------MYB52(1)
 
attgccccaatatttctttcgtattcgtaatttattatgaaattataaaaatttaaaactcgtccggctttgaacaaagcggactaaactgttagcaaag  10263400
                           ----------->GT1
                       --------->DAG2
                      ---------->DOF2             --------->ARR14(2)
                 --------->MYB59                  <---------ARR14(2)
            <---------TOE1(3)                 <---------LBD16
            <---------TOE2(3)                <---------ANAC58              <---------GLK1(2)
--------->MYB46(3)<---------ANAC55(2)        <---------ANAC58   <-----------GT1
-->DOF2    ---------->DOF2 <---------MYB46(3)<---------ANAC46--------->AHL20(2)<---------YAB1   <---
 
taaaccactctgtttaaagttatgtaaaagcggttcaaagttagtatttcgtggatttgttcaattttttctaatctagattgttatagattatagttta  10263500
                                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)
                                                  <---------YAB1
                                                 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)              <
                                       <---------CCA1(2)                                           <
                                    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                      <xxxxx
                                --------->MYB46(3)--------->ICU4                             -------
                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                   <xxxxxxxxxxxx
                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                   <xxxxxxxxxxxxx
                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                   --------->ZAT6
                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    <---------GLK1(2)xxxxxxxxxxxx
                             --------->MYB46(3) --------->YAB1         <---------ARR11(3)   <xxxxxxx
                        ------->GAMYB--------->YAB1  <-----------RAV1(1)         <xxxxxxxxxxxxxxxxxx
                        --------->ANAC46       <---------YAB1          --------->ARR11(3)  <xxxxxxxx
                       <------------AtMYB77   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)    <-------------
                       --------->MYB46(3)     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ----------->HVH21
                      <---------At5g28300  <---------DAG2          ---------->DOF2 <xxxxxxxxxxxxxxxx
                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)      <---------WOX13(1)xxxxxxxxxxxxxxxxxxxx
                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   --------->ATHB12    xxxxxxxxxxxxxxxxxxxx
                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  <---------YAB1xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
           --------->DAG2 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) --------->YAB1 <xxxxxxxxxxxxxxxxxxsmallRNA(si3)
       --------->AHL20(2)<-----------TGA1  <----------DOF2 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <
 ----------->GT1    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <xxx
 --------->YAB1    <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<---------At4g35610   <xxxxxxxxxxxxxxxxxxsmallRNA(le3)
------YAB1---------->DOF2<-----------HVH21--------->TOE2(3)--------->ICU4xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)
 
tgaatagtaaataaaaagcggctataaccgtcacaaccattcatacctttatgattatggtgctgattgataaagattttgggaatgtgacactattagg  10263600
                                                --------->ZAT14
                                               <---------DAG2
                                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)
                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)
                                            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)
                                            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)
                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
                                           <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)
                                        <XXXXXXXXXXXXXXXXXXXXMIR846
                                     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)
                                     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)
                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)
                                  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
                                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)
                            xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)
                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
                           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)
                           <xxxxxxxxxxxxxxxxsmallRNA(i)
                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
                          <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)
                          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
                          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)
                          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)
                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
                          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)
                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)
                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)
                         <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)
                    <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
                   xxxxxxxxxxxxxxxx>smallRNA(si3)<-----------GT1
                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
                  xxxxxxxxxxxxxxxxxxx>smallRNA(si3)
                  xxxxxxxxxxxxxxxxxxx>smallRNA(se3)
                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)
                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)
                 <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)
                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
                ---------->ID1  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)
                <-----------------AGL1----------------------->TaNAC69(2)
               <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
               <-----------GT1  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
               <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)
               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)
  <---------HSFB2a(2)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)
  --------->HSFB2a(2)<xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxsmallRNA(i)
---------DAG2<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)
xxxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)
-->MYB59     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       <----------DOF2
xxxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)
xxxxxxxxxxsmallRNA(l2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)
xxxxxxxx>smallRNA(fl3)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   ----------->GT1
xxxxxxxxxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
xsmallRNA(si3) xxxxxxxxxxxxxxxx>smallRNA(i)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
xxxxxxxxxxxxxxxxsmallRNA(si3)xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)
----AGL1  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) <----------DOF2                                    --
xxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<---------DAG2                           <-
>smallRNA(fl3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) <---------DAG2                                <-
xx>smallRNA(fl3)<---------TOE2(3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)               ----------->RAV1(2)
----------DOF2<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <----------DOF2              <-----------GT1  --
xxxxxxxxxxxxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   <----------ID1           <--
 
cacttttggaaaatgttttgacgttttaggcacttccaagagtttaggcactttactttacttttggtgaaaaaatggacaaaattacccctgcgatttt  10263700
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AGI:  At3g27700.1   
Description:  RNA recognition motif (RRM)-containing protein. similar to H0718E12.5 [Oryza sativa (indica cultivar-group)] (GB:CAH66461.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677)
Range:  from: 10258354    to: 10263211    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
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