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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<---------
ARR11(3)
<---------
TOE2(3)
--------->
At4g35610
<---------
ICU4
----------->
RAV1(1)
--------->
ANAC46
--------->
YAB1
--------->
ANAC46
<---------
ICU4
--------->
WOX13(1)
--------->
ANAC58
-------
GT1
<---------
YAB1
<---------
ATHB12
--------->
LBD16
--------->
ANAC58
->
ARR14(2)
--------->
ICU4
--------->
ZAT6
--------->
ZAT6
---------->
DOF2
<
--
ARR14(2)
<-------
TEIL
--------->
MYB46(3)
--------->
AHL20(2)
--------->
GLK1(1)
--------->
ARR11(3)
actatcgattaagttcataattcccacaacaactcgaaaacactaatcaattaagactaactccagaattctaactacaagcagcataagaacttagggt
10262800
--------->
ARR11(3)
<----
<---------
ARR11(3)
<---------
ARR11(3)
<---------
YAB1
-----
--------->
GLK1(1)
--------->
ARR11(3)
--------->
YAB1
------>
ZmHOX2a(1)
<---------
GLK1(1)
<---------
AHL20(2)
--------->
ICU4
<---------
MYB52(1)
------->
TEIL
<---------
HSFB2a(2)
--------->
AHL20(2)
--------->
KAN4(1)
<--------
--------->
ANAC46
--------->
HSFB2a(2)
----------->
GT1
<---------
KAN4(2)
<---------
ZAT18
-----------
GT1
<----------
DOF2
---------->
DOF2
<---------
GLK1(2)
----------->
HVH21
<----
ttatacgaacctagagagctttcagaaatcttcaaaaaaaaaaaggaaataaatcttac
aggttctcttggaataatcagtgactctgttcgctcctctt
10262900
------>
NtERF2
--------->
DEAR3(1)
------>
NtERF2
------>
NtERF2
----------->
HVH21
--------->
DEAR3(1)
<------
NtERF2
--------->
DEAR3(2)
--------->
ATERF1(1)
<---------
ATERF1(1)
------>
NtERF2
--------->
ARR14(2)
<---------
ARR14(2)
<---------
RAP2.3(1)
<---------
RAP2.6(2)
<<<<<<<<<<<<<<<<<
LFY
<----------
ID1
--------->
YAB1
<---------
At4g35610
--------->
AHL20(2)
--------->
ARR11(3)
-----
ZAT14
<---------
ARR14(2)
<---------
MYB59
--------->
ANAC58
---->
ZAT14
--------->
ARR14(2)
--------->
TOE1(3)
--------->
ANAC58
-
ALFIN1
--------->
GLK1(2)
--------->
DEAR3(1)
--------->
AHL20(2)
<---------
LBD16
<---
-----
REM1(2)
<xxxxxxxxxxxxxxxx
smallRNA(i)
--------->
TOE2(3)
<---------
HSFB2a(1)
<----
cacagacaaacaaaatcggtttcggctccgacgacgacgaaaacctaaataaaaaacaatggatggaacatttggggaagaaattggacaaaattggagg
10263000
<------
NtERF2
------>
NtERF2
--------->
RAP2.3(3)
--------->
RAP2.3(2)
--------->
DEAR3(1)
--------->
RRTF1(3)
<---------
ANAC46
--------->
RRTF1(1)
<------
NtERF2
--------->
ATERF1(1)
--------->
DEAR4(2)
--------->
ERF1
<---------
ARR11(3)
--------->
ARR14(2)
--------->
ARR11(3)
<---------
ARR14(2)
----------->
ARR10
<-----------
HVH21
<------
NtERF2
<---------
ATERF1(1)
--------->
LBD16
------>
NtERF2
<<<<<<<<<
GATA-1
<------
NtERF2
<<<<<<<<<
GATA-3
<---------
ABI4(2)
<<<<<<<<<
GATA-4
--------->
ATERF1(1)
<---------
YAB1
<---------
DEAR3(1)
--------->
RAP2.3(1)
<------
NtERF2
--------->
YAB1
<---------
DEAR3(1)
------>
NtERF2
<---------
LBD16
------>
NtERF2
<---------
ATHB12
<---------
ANAC46
<---------
DEAR3(1)
<---------
DEAR3(1)
--------->
WOX13(1)
<---------
LBD16
<---------
RAP2.3(1)
--------->
DEAR3(1)
<<<<<<<<<
WRKY18
--------->
ANAC46
--------->
DEAR3(1)
<-----------
HVH21
--------->
TOE2(3)
<---------
LBD16
<---------
ATERF1(1)
--------->
GLK1(2)
------
ARR14(2)
<<<<<<<<<
GATA-2
<---------
RAP2.3(2)
<------
ZmHOX2a(1)
<---------
MYB52(1)
--
ZmHOX2a(1)
--------->
ARR14(2)
<---------
DEAR3(1)
--------->
ICU4
--------->
ANAC46
aatcgtcaatgaagattgaatccacggcggagatttttggccgcgccgtcgaggtttcggaattagtaggagaatcaacgtcgccgatagcgactggtct
10263100
<---------
ANAC46
<---------
At4g35610
---
<---------
ZAT2
-----
--------->
ZAT2
--------
--------->
At4g35610
--------->
ZAT6
<XXXXXXXXXXXXXXXXXXXX
MIR396A
<----------
DOF2
<---------
MYB52(2)
<XXXXXXXXXXXXXXXXXXXX
MIR396B
<---------
ANAC58
--------->
ANAC58
<---------
TOE2(3)
---------->
DOF2
<---------
ANAC58
--------->
ANAC46
<---------
TOE1(3)
--------->
At4g35610
--------->
ALFIN1
--------->
ANAC58
<---------
MYB52(1)
<---------
At4g35610
---------->
DOF2
<---------
YAB1
--------
cgtcgttagggtttgatggagctgtggaatagctgagaaagagagagagagggtagagagagaaagaggggcttatttgttattgcaagtaacacaagga
10263200
<------
ZmHOX2a(1)
<------------
CBF
<---------
TOE2(3)
------>
DAG2
--------->
ANAC46
<-----------
GT1
<---------
AHL20(2)
----->
DOF2
-------->
P
<---------
AHL20(2)
--------->
AHL20(2)
->
ANAC58
<-----------
GT1
--------->
AHL20(2)
<---------
AHL20(2)
->
ANAC58
*
TSS
<---------
AHL20(2)
<----------
DOF2
------------>
CBF
<---
aaggcgaggaa
gacagaaactagactggaaaatgttttattttctaccccaaaaattctttaattttacaaattgacccaatatttatttaagtttacaa
10263300
<---------
AHL20(2)
--------->
YAB1
<---------
YAB1
--------->
AHL20(1)
<---------
AHL20(1)
<---------
AHL20(2)
--------->
YAB1
<---------
YAB1
--------------------->
WRI1
<---------
ARR14(2)
--------->
YAB1
<----------
DOF2
<---------
ZAT14
<---------
ANAC58
--------->
AHL20(2)
--------->
LBD16
--------->
ZAT14
<---------
ANAC46
<---------
YAB1
--------->
SPL7
------>
NtERF2
<---------
ANAC58
--------->
YAB1
<---------
LBD16
--------->
ZAT18
------------>
CBF
--------->
ARR14(2)
--------->
ICU4
<---------
SPL7
<---------
ZAT18
--------
---------
CBF
<----------
DOF2
--------->
AHL20(2)
--------->
AHL20(2)
---------->
DOF2
<---------
MYB52(1)
attgccccaatatttctttcgtattcgtaatttattatgaaattataaaaatttaaaactcgtccggctttgaacaaagcggactaaactgttagcaaag
10263400
----------->
GT1
--------->
DAG2
---------->
DOF2
--------->
ARR14(2)
--------->
MYB59
<---------
ARR14(2)
<---------
TOE1(3)
<---------
LBD16
<---------
TOE2(3)
<---------
ANAC58
<---------
GLK1(2)
--------->
MYB46(3)
<---------
ANAC55(2)
<---------
ANAC58
<-----------
GT1
-->
DOF2
---------->
DOF2
<---------
MYB46(3)
<---------
ANAC46
--------->
AHL20(2)
<---------
YAB1
<---
taaaccactctgtttaaagttatgtaaaagcggttcaaagttagtatttcgtggatttgttcaattttttctaatctagattgttatagattatagttta
10263500
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
<---------
YAB1
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
<
<---------
CCA1(2)
<
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
<xxxxx
--------->
MYB46(3)
--------->
ICU4
-------
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
<xxxxxxxxxxxx
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxx
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
--------->
ZAT6
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<---------
GLK1(2)
xxxxxxxxxxxx
--------->
MYB46(3)
--------->
YAB1
<---------
ARR11(3)
<xxxxxxx
------->
GAMYB
--------->
YAB1
<-----------
RAV1(1)
<xxxxxxxxxxxxxxxxxx
--------->
ANAC46
<---------
YAB1
--------->
ARR11(3)
<xxxxxxxx
<------------
AtMYB77
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
<-------------
--------->
MYB46(3)
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
----------->
HVH21
<---------
At5g28300
<---------
DAG2
---------->
DOF2
<xxxxxxxxxxxxxxxx
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(s2)
<---------
WOX13(1)
xxxxxxxxxxxxxxxxxxxx
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
--------->
ATHB12
xxxxxxxxxxxxxxxxxxxx
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<---------
YAB1
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
--------->
DAG2
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
--------->
YAB1
<xxxxxxxxxxxxxxxxxx
smallRNA(si3)
--------->
AHL20(2)
<-----------
TGA1
<----------
DOF2
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<
----------->
GT1
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
<xxx
--------->
YAB1
<xxxxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<---------
At4g35610
<xxxxxxxxxxxxxxxxxx
smallRNA(le3)
------
YAB1
---------->
DOF2
<-----------
HVH21
--------->
TOE2(3)
--------->
ICU4
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
tgaatagtaaataaaaagcggctataaccgtcacaaccattcatacctttatgattatggtgctgattgataaagattttgggaatgtgacactattagg
10263600
--------->
ZAT14
<---------
DAG2
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<XXXXXXXXXXXXXXXXXXXX
MIR846
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
xxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxx
smallRNA(i)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
xxxxxxxxxxxxxxxx>
smallRNA(si3)
<-----------
GT1
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
xxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
xxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
---------->
ID1
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<-----------------
AGL1
----------------------->
TaNAC69(2)
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<-----------
GT1
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
<---------
HSFB2a(2)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
--------->
HSFB2a(2)
<xxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxxxxx
smallRNA(i)
---------
DAG2
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
xxxxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
-->
MYB59
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<----------
DOF2
xxxxxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
xxxxxxxxxx
smallRNA(l2)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
xxxxxxxx>
smallRNA(fl3)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
----------->
GT1
xxxxxxxxxxxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
x
smallRNA(si3)
xxxxxxxxxxxxxxxx>
smallRNA(i)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
xxxxxxxxxxxxxxxx
smallRNA(si3)
xxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
----
AGL1
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
<----------
DOF2
--
xxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<---------
DAG2
<-
>
smallRNA(fl3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<---------
DAG2
<-
xx>
smallRNA(fl3)
<---------
TOE2(3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
----------->
RAV1(2)
----------
DOF2
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<----------
DOF2
<-----------
GT1
--
xxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<----------
ID1
<--
cacttttggaaaatgttttgacgttttaggcacttccaagagtttaggcactttactttacttttggtgaaaaaatggacaaaattacccctgcgatttt
10263700
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AGI:
At3g27700.1
Description:
RNA recognition motif (RRM)-containing protein. similar to H0718E12.5 [Oryza sativa (indica cultivar-group)] (GB:CAH66461.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677)
Range:
from: 10258354
to: 10263211
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
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