Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                              <---------ANAC58                                  --------->GLK1(1)                            <---------ANAC58                      --------->AHL20(2)        ---------                       <---------ICU4                             <---------AHL20(2) ----------->GT1                      <---------YAB1                        <---------AHL20(2)<---------CCA1(1)                      --------->ICU4                       <---------AHL20(2) <---------RVE1(1)                    --------->YAB1              <---------ANAC58 --------->AHL20(2)  <---------TOE2(3)                  --------->ARR11(3)            <---------ANAC58<---------AHL20(2)<---------AHL20(2)                <---------AHL20(2)        <---------YAB1--------->AHL20(2)   --------->ARR14(2)               --------->AHL20(2)       <---------ZAT6  <---------AHL20(2)   <---------ARR14(2)   attgaagagtttgtctataaaatcatgtttacttggcatttagtgttattgtttgcaattttttattttaaattagtcggatattttaagttaaaatctg  8940700                                                                      --------->AHL20(1)                                                                      <---------AHL20(2)                                                                     <---------AHL20(2)                                                                 --------->AHL20(2)                                                                 <---------AHL20(2)                                                                 --------->AHL20(1)                                                                 <---------AHL20(1)                                                              --------->YAB1                                                             <---------YAB1                                                             <---------AHL20(2)                                                            --------->AHL20(2)                                                            <---------AHL20(2)                                                            --------->AHL20(1)                                 --------->ATHB51        --------->YAB1                                 <---------ICU4          --------->AHL20(2)                                <---------YAB1          <---------YAB1--------->AHL20(2)            <                              --------->YAB1           --------->AHL20(1)                           -                             >>>>>>>>>MYB98            --------->AHL20(2)                           <                            <-----------GT1            <---------AHL20(2)   <-----------GT1         -   --------->ANAC46<---------TOE1(3)        ---------->DOF2 <---------AHL20(1)                <------ >GLK1(2)          <---------TOE2(3)--------->YAB1    --------->YAB1 --------->AHL20(2)  --------->ATHB12   aatacacagcatgttccttctaacgttttttaacataattgtaaactaaagaaaaattataatataataaattaaattataccctctctattcattgtag  8940800                 ------>MYB46(1)                                                       <----------DOF2            <-----------GT1                                                          <-------TEIL       --------->MYB52(2)                                                           --------->GLK1(2) ---------ARR14(2)                                                             <---------TOE2(1) -------->ARR11(3)                                                             <---------TOE1(1) ---------ARR11(3)                                                           <------ZmHOX2a(1)   ---- -------->ARR14(2)                                                          <----------ID1      ----- ---HSFB2a(2)    ------>MYB83                                     <---------ARR14(2)<---------ARR14(2)   aagatttgtttgtttcaccaaatgtgttttttttttataagttgctctcactcttgagagttttggagtattttgaagaggacgaggttcttttgtgaaa  8940900                                                                                                  <--                                                                                                 <---                                               --------->AHL20(2)                          <---------                                              --------->AHL20(2)                     <---------ARR11(3)                                              <---------AHL20(2)                     --------->ARR11(3)                                              <---------ATHB51                      --------->GLK1(1)                                       <---------YAB1      <---------ZAT18          <---------GLK1(1)              --------->YAB1         <---------ICU4        <---------ZAT14         <---------ARR11(3)      <----------ID1                 --------->YAB1        --------->ZAT18    --------->YAB1    <----  ---------->DOF2                   <---------ATHB12       --------->ZAT14  ------->TEIL ------>ZmHOX2a(1) ----->DAG2   <---------ICU4        --------->ICU4  <---------YAB1       <---------ATHB12============ ----->DOF2  <---------ATHB12---------->DOF2  <---------ATHB12       <---------YAB1--------->ARR11(3)   aagtgaaagaaacaaatcatgtcaagaattagaaagaaatcatgacaaataattttgtttgtgcagaaattacaaatgaatcatagatatccttctaatt  8941000   ------>ZmHOX2a(2)                                       --------->TOE2(3) <---------ARR14(2)                                     -------->P --------->ARR14(2)                                  <---------ANAC58    --------->ANAC58 -------HSFB2a(2)                         <------------CBF --------->TOE1(3) --------->At4g35610 ------LBD16                           --------------->AGL15             *TSS<---------At4g35610 --------AGL2                          <---------------AGL15             --------->ANAC58 -----LBD16 --------->At4g35610       <-----------------AGL2            --------->WOX13(1) =========HOX2a_HOX2a              <----------DOF2   <---------ANAC58 --------->WRKY18(1)   cgggatcggaaaccagttgaaaaatcgatggactaagctttctatattgggactagcttacccttagaattagtcaagcagcttaaatcatctatgactt  8941100          <---------TOE2(3)          ----------->GT1     --------->YAB1                                                    --------->AHL20(2)    <---------YAB1                                               --------->bZIP60(1)    --------->ICU4                                               <---------bZIP60(1)   <---------AHL20(2)                                     <---------ANAC58                         --   <---------AHL20(1)                                     <---------ANAC58                   --------   --------->AHL20(2)                                <---------ANAC55(2)                    <--------   --------->AHL20(1)                            ------->TEIL ----------->HVH21           --------->DAG2  --------->YAB1                   <---------CCA1(2) --------->ANAC55(2)                 ---------->DOF2   aaaattataattaagaaaaaacaatgcctaaatatgcatatatttcaaatgtatcacataacttgtgacataagaaaatataaacaaaacaaaaagggca  8941200                                                                                   --------->ANAC58                                                                                   --------->ANAC46                                                                                   --------->bZIP60(2)                                                  ----------->HVH21                --------->O2                                                 <-----------HVH21                 --------->ANAC58                                                --------->TGA1a            <---------ARR14(2)                                                --------->O2               ------->TEIL                                                <---------O2            --------->ANAC58                                                <---------TGA1a         --------->ANAC58                                     <---------ALFIN1    --------->At5g28300      ------>NtERF2     -                                     ----------->RAV1(1)--------------->AGL15    <---------ALFIN1   -                                  <---------TCP15(1)    <---------------AGL15 --------->ANAC58      -                                  --------->PCF2=======================bZIP_DOF------>NtERF2    -----        ---------->DOF2 ----------->RAV1(2)<---------ZAT18     ----------->GT1--------->ANAC46  -----   <---------ARR11(3)   =========================RAV   <-----------------AGL1 --------->ANAC58------- -------->DOF2        <---------ALFIN1     <---------ZAT14    --------->DAG2 --------->MYB46(3)------ --->GT1==================================================bZIP_DOF      --------->ANAC46 --------->YAB1 --ID1----------->HVH21 --------->At4g35610--------->ZAT14  ---------->DOF2--------->ARR14(2) =======   aaaaagacctgaaagcttagaggcacacctgcataggtcccacagttcactcgtgacaccgtaaaaggcaaaacacgaacccgccacgttatcacaaaaa  8941300     --------->ANAC46     --------->ANAC58     --------->O2     <---------O2     --------->ANAC58     --------->bZIP60(2)     <---------TGA1a     --------->TGA1a -------->ANAC46 -------->ANAC58 -------->ANAC58                                                      --------->AHL20(2) ---->ANAC58                     --------->ANAC46                   <----------DOF2            <----- ---->ANAC58                     --------->ANAC55(1)               --------->YAB1              ------ --->DOF2                     --------->ZAT14                   ------>ZmHOX2a(1)            <------- --->DAG2                     <---------ZAT14    <-----------GT1<---------CCA1(2)      --------->ARR14(2) ==============bZIP_DOF<-----------HVH21<-----------GT1      <-----------GT1<-----------GT1------>ZmHOX2a(1)   gcaagccacgtcaatatagtctcactgtcaactacacttaacttactattttcacatctcattttcctatctttatataaaccctccaggctcctcttta  8941400                    ------->GAMYB                   <---------MYB52(2)                --------->MYB46(3)               ------>MYB83               ------>MYB46(1)            --------->MYB46(3)          --------->AtMYB61                                              --------->YAB1          <---------ALFIN1                                               ----------->GT1      --------->MYB46(3)                                          --------->ANAC58    <-----------GT1--------->MYB46(3)                             --------->ANAC58  <----------DOF2----------->RAV1(1)                             --------->SPL7 ----AHL20(2) ----------->RAV1(1)     <------ZmHOX2a(1)    --------->ALFIN1 --->AHL20(2)--------->AtMYB61  --------->TOE1(3)        --------->CCA1(2) ---DOF2 --------->MYB46(3)  <-----------GT1    ---------->DOF2 <------ZmHOX2a(1)   atttctttaccaccaccaacaacaaacatataaaccataaggaaaacagagaaagagagagatggaggacgacaatagtaacaacaacaacaacaacaac  8941500                                            ------>ZmHOX2a(1)                                          ------>ZmHOX2a(2)                                        --------->ARR11(3)                              <-------TEIL           --------->YAB1               <---------ARR11(3)                       ----------->RAV1(1)        <----------DOF2                --------->YAB1                      --------->ZAT2       <---------DAG2                 <---------ATHB12                     --------->At4g35610     <---------TOE1(2)             <---------WRKY12--------->ATHB12     <---------At4g35610       ---     ------->TEIL                  <---------WRKY38(1)                 --------->ARR14(2)      <-----  ------>ZmHOX2a(2)               --------->WRKY18(1)                  <---------ARR14(2)--------->YAB1   gtgatcgcacctttcatcgtgaaaacatatcagatggtcaatgatccttccaccgattggctcatcacttggggacctgctcacaacagtttcatagtcg  8941600  Previous    Next  AGI:  At3g24520.1    Description:  AT-HSFC1 (Arabidopsis thaliana heat shock transcription factor C1); DNA binding / transcription factor. Identical to Heat stress transcription factor C-1 (HSFC1) [Arabidopsis Thaliana] (GB:Q9LV52); similar to ATHSFA2 (Arabidopsis thaliana heat shock transcription factor A2), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT2G26150.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN72162.1); contains InterPro domain Winged helix repressor DNA-binding (InterPro:IPR011991); contains InterPro domain Heat shock factor (HSF)-type, DNA-binding; (InterPro:IPR000232) Range:  from: 8941073    to: 8942881    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g24518.1    Description:  other RNA Range:  from: 8941136    to: 8942495    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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