Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100              --------->LBD16          ------>ZmHOX2a(2)        <---------ARR11(3)        --------->ARR14(3)        <---------GLK1(2)        --------->ARR11(3)        --------->ARR14(2)        --------->AGP1        <---------ARR14(2)        <---------ARR14(3)      ----------->ARR10    --------->ATERF1(1)                              --------->ARR14(2)    <------NtERF2                                    <---------ARR14(2)   ----------->RAV1(1)                       <---------ATHB12   ------>NtERF2                  ---------->DOF2    --------->ARR11(3)           --------->ANAC46 ------>DOF2------>ZmHOX2a(1) <---------HSFB2a(2)    <---------GLK1(2)            --------->ANAC58 ---->RAV1(1)            <----------DOF2 --------->MYB46(3)                       --------->ANAC58  - ->ANAC46<------ZmHOX2a(2)    --------->HSFB2a(2)   <---------At4g35610     <-----------GT1        --   aaaggcgccagatcctgaaacaattctcttttctacaaaagaaaccactaattcagatactgaaccaagttcccaaattcacatactcaacacaatttga  7273600                                               <---------------------WRI1                                             ----------->HVH21                                             --------->WRKY45                                             --------->WRKY38(1)                                            --------->DOF5.7(2)           --------->TOE2(3)               <-------GAMYB           <----------DOF2                <---------MYB46(3)   <---------ARR11(3)              <---------STY1(1)   --------->ARR11(3)            --------->TOE1(3)                        <-----------RAV1(2) -------->DAG2                  --------->ZAT6<---------DOF5.7(2)      --------->ZAT18              - -------->DOF2                <-----------GT1--------->WRKY12   --------->MYB52(1)          >>>>>>>>>TBF1   gaaaagttctcaactttagcaaatttcaagagtaaccctagcgctcgttgacgaatcagacaaaaaaaacgactgcccagatggaagaaatgaagaagaa  7273700                                                                                          --------->At4g35610                                                                               ------>MYB83                                --------->HSFB2a(2)                  <------ZmHOX2a(2) --------->At4g35610                                <---------HSFB2a(2)             XXXXXXXXXXXXXXXXXXXX>MIR832-5P                           <---------HSFB2a(1)                 <---------ANAC46------>MYB46(1)                    --------->TOE2(2)                         <---------At4g35610      --------->ZAT2                    --------->TOE2(3)                         --------->At4g35610      <---------ZAT2           <---------YAB1---------->DOF2                  <------ZmHOX2a(1)  --------->MYB46(3) -------->TOE1(2)   --------->TOE1(2)                     ==================HOX2a_HOX2a<---------At4g35610   aacatgagagattataagaaaaccttggaaagctcgagaagagcattttctctgagttcaggattgctgagatcgagtaccaactgttcagcagaggcca  7273800                    <---------At4g35610                    <---------GLK1(1)                    --------->At4g35610                    --------->GLK1(1)                    <---------ZAT2                    --------->ZAT2                  <------NtERF2                                    <---------ZAT18                 --------->LBD16                                   --------->ZAT18            -------                 <------NtERF2 --------->ARR11(3)               --------->ALFIN1              -------                <---------DEAR3(1)        <---------AtMYB61     <---------ANAC58             <-------TEIL               <---------LBD16<------ZmHOX2a(1)       <---------ALFIN1                      ---------         <-----------RAV1(1) <------MYB83 <---------DEAR3(1)    <---------ANAC58           <---------ARR14(2)       <----------DOF2       <------MYB46(1)          --------->AtMYB61                    <---------GLK1(2)      ------>ZmHOX2a(2)    <--------P     --------->ALFIN1 ---------->DOF2                 --------->ARR11(1)      ===============================HOX2a_HOX2a     --------->MYB46(3)                    --------->ARR14(2)     <------ZmHOX2a(2)    <---------MYB52(1) --------->ALFIN1--------->DAG2              ----------->ARR10     ================================HOX2a_HOX2a   <------ZmHOX2a(1)                     <-------TEIL    --------->ARR11(3)   --------->LBD16--------->LBD16--------->MYB52(1)               <--------P    <---------ARR11(3) <---------LBD16<---------LBD16<---------ABI4(2)                ----------->GT1   aattgcgatctttgttggccggagctccggtaggattttgtgcggaggtgctaggaccaccgaaaggtgtgcccatggagagagaagaaggtagattcgc  7273900                                                     *TSS<-----------GT1                       --------->MYB52(2)        --------->ARR14(1)             <<<<<<<<<MYB2                      <---------GLK1(2)                                 <--         <--------P   <---------TOE1(2)         --------->ARR11(1)                          ---------     --------->LBD16 <---------MYB52(1)         --------->ARR14(2)                          --------- -->ANAC58 <------MYB83<---------MYB46(3)       <---------ARR14(2)                       --------->ARR14(2) -->ANAC58 <------MYB46(1)             <----------DOF2--------->ARR14(2)                 <---------ARR14(2) >ARR14(1)<---------AtMYB61<---------MYB46(3)<---------TOE2(3)             <----------DOF2  ---------   cattctccagagttggttttctcgtttgtttgttaatgggacttttcaaggattcggtttctcccttcttctctcttctttatagatggcgattacgccc  7274000                     <---------AtLEC2                   <-----------GT1               --------->AHL20(2)               <---------AHL20(2)      ------>ZmHOX2a(1)     --------->TOE2(3)                                                      <-----------GT1 --------DOF2 <---------AHL20(2)                                    <---------YAB1 >ANAC58   --------->AHL20(2)                                     --------->YAB1               <----- >ANAC58   <---------AHL20(2)                                     <---------ICU4              <------ >ANAC46  <---------AHL20(2)         --------->AHL20(2)          <---------ATHB12         <---------MYB52(1)   ctttcttccttatttatttattttcatgtcaaaacaaaaaaaaatgtttagtttcaaaatagttttaatcatcactatttacgacttaaaccgtttttta  7274100                --------->YAB1               <---------YAB1              --------->AHL20(1)                                 <---------WOX13(1)  <---------TOE2(3)              --------->AHL20(2)                           ----------->GT1--------->ZAT18         --------->AHL20(2)        ----------->GT1         <---------ZAT6 <---------ZAT18      --------->YAB1     <---------ZAT6              --------->DAG2     <---------------AtSPL8 ----AHL20(2) <---------AHL20(2) <-------MYC3       ---------->DOF2     --------------->AtSPL8 ---AHL20(2) --------->YAB1      ------->MYC3--------->AHL20(2)--------->ATHB12      ----------->GT1   tttgttattcataaattataatatgtagtgatgcatatggtaaacaaataaacaaaaagtagtgttaattggtttgtgtacaaaattaagttataagtta  7274200                                --------->ANAC58                                             <-------                                --------->ANAC46                                        -------->ATHB1                            <---------YAB1                                   <---------TOE2(3)-------                         --------->AHL20(2)                            <---------YAB1   <---------ICU4                         <---------AHL20(2)                           <---------ARR11(3)--------->YAB1                  <---------GLK1(1)               --------->ANAC58    --------->ARR11(3)--------->ATHB12              --------->ANAC58  --------->ANAC58  --------->ANAC58 --------->YAB1      <---------YAB1              --------->ANAC58---------->DOF2 --------->ANAC58     <---------ICU4      --------->ICU4       ------->TEIL <---------ATHB12          --------->ANAC46     --------->AHL20(2)  <---------ATHB12    <---------YAB1--------->GLK1(1)           --------->ANAC58  --------->YAB1      <---------AHL20(2)   aacaacatgaatgtgaacggaaatcaatttatcaaagcaatggcacataagcaagaaatagttctctaataatatcattaagttttttaatcattgatgt  7274300                                         --------->AHL20(1)                                         --------->AHL20(2)                                         <---------AHL20(2)                              --------->AHL20(1)                              --------->ARR11(3)                              <---------ARR11(3)                             --------->TOE2(2)                              <---------AHL20(1)                             --------->TOE1(2)                            <---------AHL20(1)                              <---------ANAC55(2)                            --------->AHL20(1)                              --------->ANAC58                            --------->ARR11(3)                    --------->ANAC46--------->ARR11(3) --------->RVE1(1)          <---------ARR11(3)   <---------WRKY18(1)        --------->ANAC58 --TOE2(3)               --------->AHL20(2)     --------->WRKY38(1)         ----------->GT1 ---->GT1        ----------->RAV1(1)    --------->AHL20(2) ------->TEIL--------->AtMYB61  --------->ZAT6   aaaatatcacatatgagtccaacataagaaaatatttttaaaaaaaattgttgactgaacgaatttagacggaccaaaacgtaagaactcgaacactaaa  7274400                                          --------->HSFB2a(2)                                          <---------HSFB2a(2)                                       <                                      <---------ANAC58                                          <----                                      <---------ANAC58                                          <----                     <---------ANAC46--------->HSFC1(2)--------->AHL20(2)                       -----                 --------->CCA1(2)   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                       -----                <---------ARR14(2)   --------->HSFB2a(1)---------->DOF2                    ----------                --------->ARR14(2)   <---------HSFC1(2)<---------AHL20(2)       ---------->DOF2 -----    <---------AHL20(2)          --------->MYB46(3) --------->AHL20(2)  <----------DOF2---------->DOF2    --------->AHL20(2)          <------------AtMYB77--------->YAB1---------->DOF2--------->DAG2 <----   tgagatttaaattttcaagataggcgtaaatgtaaccgatgcttctgaaacaaataataaaagagttagaaagctttataagaaaagtacaagcggaaaa  7274500  Previous    Next  AGI:  At3g20800.1    Description:  rcd1-like cell differentiation protein, putative. similar to rcd1-like cell differentiation protein, putative [Arabidopsis thaliana] (TAIR:AT5G12980.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO38914.1); contains InterPro domain Cell differentiation proteins, Rcd1-like (InterPro:IPR007216) Range:  from: 7271143    to: 7273953    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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