Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                      <---------YAB1                    <---------AHL20(2)                 <---------AHL20(2)                                      <-------GAMYB                --------->AHL20(2)                                      <---------MYB46(3)     --------->ANAC58                                       --------->AHL20(2)           --------->DAG2     --------->ANAC46             --------->ARR14(2)        <---------AHL20(2)          ---------->DOF2     --------->ANAC58   <---------AHL20(2)     --------->YAB1           --------->MYB52(2)   taaaaccaagacatggaattttataatttatactagtattctcgttgtatcataacttatatttaaatttgtgtttgttgtaaacaatcgaaaagcatat  6706800                       ---------->DOF2                    --------->YAB1                   --------->ICU4                                  <---------YAB1                   <---------YAB1                                  ----------->GT1                 --------->YAB1                                  --------->YAB1                <---------YAB1                                   <---------ICU4             <---------AHL20(2)                                 --------->ICU4                      <         <---------AHL20(2)                                   --------->YAB1                    <----        --------->ARR11(3)     ----------->GT1                <---------ICU4                   ------        <---------ARR11(3)     <----------ID1                --------->ICU4                    <-----        <---------AHL20(1)    ----------->GT1              --------->YAB1                     <------       <---------CCA1(2)    ---------->DOF2           <---------ATHB12               <---------TOE1(2)   agaattcgtatatattttataataataaagaaaaggaaaaaacaaaatcgagacaaatgaataataatcatgaaaaaatgtttttcatatgttcttatat  6706900                                                                         <---------YAB1         ----- -----------GT1                                                        --------->YAB1           ----- -----AHL20(2)                 ---------->DOF2               <---------ARR11(3)               <------ --->AHL20(1)        --------->AHL20(2)     <----------DOF2  --------->ARR11(3)       <---------YAB1 ----AHL20(1)    <---------MYB59            <---------DAG2<---------AHL20(2)        --------->YAB1  - ---CCA1(2)    --------->MYB52(1)        <-----------GT1  --------->AHL20(2)  --------->At5g28300 <--   attttcaatttgataaataccgaataaatgtttcaaagtaatttgactttttaagtcaaataaaatctctaaattataacagtgaatcacaatagaccaa  6707000   <---------ICU4                                              --------->AHL20(2)   --------->YAB1                                 <---------TOE1(3)                    --------->YAB1  <---------ATHB12                                <---------TOE2(3)         <---------AHL20(2) ->MYB83                                --------->TOE1(2)      <---------AHL20(2)  --------->CCA1(2) ->MYB46(1)              <---------YAB1 --------->TOE2(2)      <---------YAB1--------->AHL20(2) ---MYB59       --------->CCA1(2)       <---------MYB59       --------->AHL20(2) --------->AHL20(2) -------->WOX13(1)<---------YAB1        --------->TOE2(3) --------->ANAC46 <---------AHL20(2) -------ATHB12 --------->ARR11(1)     --------->GLK1(2) <-----------GT1    --------->AHL20(2)  <-----   atcaatcatagcaaatagatatgatttatgaaaaaatgagaacctaagttttaatgttatacgatataattagataatttaaaatatatgcataatatac  6707100                                                                      <-----------GT1                                                                  <---------AHL20(2)                                                                 --------->AHL20(1)                                                           --------->ANAC58                                                           --------->ANAC46                                           <---------AHL20(2)    <---------AHL20(1)                                       -------->ATHB1      --------->ANAC58                                       <---------ICU4      <---------ANAC58                                      <---------AHL20(2)   <---------ANAC58                <---------AHL20(2)    --------->AHL20(2)   <---------ANAC55(1)               --------->AHL20(2)     --------->AHL20(1)   --------->ANAC55(1)            <---------AHL20(2)        <---------YAB1       --------->ANAC55(2)           <---------YAB1      --------->CCA1(2)           <---------ANAC55(2)          <---------AHL20(2) <------ZmHOX2a(1)             ----------->GT1        <---------YAB1  <---------REM1(1)<---------YAB1    <---------ANAC46       <---------AHL20(1)  <---------TOE1(3)    --------->TOE2(3)<---------AHL20(2)              ----     <---------YAB1  --------->ALFIN1 --------->ICU4    <---------ARR14(2)   --------->YAB1    ------ --TEIL<---------AHL20(2)  <---------TOE2(3)    --------->TOE1(3)--------->AHL20(2)   --------->TOE2(3)   atatactattatttttatttaatgtgttgaaggatacaaaattattaaaaccatagcgattacgtaatttattcactattcatcagtttcttaatccaaa  6707200                                                                                        <---------ICU4                                                                                        --------->ATHB12                                                                                        -------->ATHB1                                                                                       <---------YAB1                                                                                       <---------ATHB12                                                                                       --------->ICU4                                                                                    ------------>ATHB5                                                                                    <------NtERF2                                                                                   ------>NtERF2                                                                                   <---------ATERF1(1)                                                                                  --------->RAP2.3(3)                                                                                  --------->RAP2.3(2)                                                                                  <---------ATERF1(2)                                                                                  --------->ATERF1(2)                                                                                  --------->RRTF1(3)                                                                                  --------->RRTF1(2)                                                                                  --------->DREB2C(2)                                                                                  --------->DEAR3(1)                                                                                  --------->RAP2.6(2)                                                                                  --------->ANAC46                                                                                 --------->ATERF1(1)                                                                                 --------->DEAR4(2)                                                                                 --------->RAP2.6(1)                                                                                 --------->ORA47(2)                                                                                 <------NtERF2                                                                                 --------->ERF1                                                                                 --------->RAP2.3(1)                                                                                 --------->RRTF1(1)                                                                                --------->DREB2C(1)                                                                                ------>NtERF2                                                                                --------->ABI4(1)                                                                                <---------ATERF1(1)                                                                                <---------At4g35610                                                                                --------->At4g35610                                                                                <---------RAP2.3(1)                                                                                <---------DREB2C(1)                                                                               --------->RAP2.6(2)                                                                               <---------ATERF1(2)                                                                               --------->ATERF1(2)                                                                              --------->RAP2.3(1)                                                                         <---------ARR14(2)                                                             <-----------ARR10--------->ATERF1(1)                                                             <---------ARR14(2)--------->RAP2.3(2)                           <---------AHL20(2)                --------->ARR14(2)--------->DEAR3(1)                           <-----------TBP                  <---------CCA1(2)--------->At4g35610                           --------->AHL20(2)             <---------ANAC58  =========================                         <-----------TBP                  <---------ANAC58  <-----------RAV1(1)    ---------->DOF2  ----------->GT1             --------->TOE2(3)       --------->ARR14(2)      ---- ------->GT1    ---------->DOF2                  --------->TOE1(3)       <-----------ARR10      <---- ---->DOF2    --------->ARR11(3)               *TSS ---------->DOF2     <---------CCA1(2)      ------   agaaaaaaaagaagaagataaagaggtatttatatatcagatgttcaaaaaccctaaatcgcgtttcttctctcaaatctgccgccgccatcattgatcc  6707300                         <-----------HVH21                         <-----------TGA1                        --------->bZIP60(2)                        --------->bZIP60(1)                        <---------bZIP60(1)                        --------->ANAC55(2)                        <---------O2                        --------->O2                        <---------ANAC55(2)                        --------->ANAC46                        <---------TGA1a                                  --------->ANAC46                        --------->TGA1a                                  --------->ANAC58                        --------->ANAC58                                 --------->ANAC58                        --------->ANAC55(1)                           <---------ZAT18                        --------->ANAC58                              --------->ZAT14                       <-----------STF1                               <---------ZAT14                     <---------REM1(2)           ===============HOX2a_HOX2a =======RAV         <-----------HVH21            ------>ZmHOX2a(1)    --------->ZAT18 ----->LBD16--------->TOE2(3)                 ------>ZmHOX2a(1)  <---------ARR14(2)            ------ -------RAV1(2)<---------WRKY18(1)            ==================HOX2a_HOX2a            -------------- >ZmHOX2a(2)--------->TOE1(3)         <-----------GT1    ------>ZmHOX2a(2)             <-------------   aggtattgctctaaccttgactcttcacgtcattcgcatattactctcctcctcgctgatccattcgaattctgcactcaaatcgtgtttttgtacatca  6707400                                                                                                 <---              <---------GLK1(2)                                                                  <---       --------->YAB1                                                                            <---     --------->ANAC58                    <---------YAB1                                         <----     --------->ANAC58                <---------ANAC58                                           <---- --->YAB1   <---------YAB1           <---------ANAC58                  ---------->DOF2          <---- ->AtSPL8 <---------ICU4         <----------DOF2    ------>ZmHOX2a(1)--------->YAB1            <----- --AtSPL8--------->ICU4      <---------ATHB12       <----------DOF2 <---------YAB1             ------   tagtttcaagcattatgattctctctagccaatgacttttcttgcgattgaatccttttgcagtctcgttatcaaaagttgaagaatttagtttagtttg  6707500                                                                                                    - <---------ANAC46                                                                               <---- ------ANAC58                                                                           --------->MYB46(3) ----GAMYB                                     <---------TOE2(3)                      --------->WOX13(1) ------ANAC58                               <---------MYB52(1)                   <---------ANAC58   < --MYB83 ----------->ARR10             <-----------GT1                           <---------ANAC58   - -----MYB46(3)                    <----------DOF2                <---------GLK1(2)  <---------ZAT18<- --MYB46(1)                      ------>ZmHOX2a(2)             <---------YAB1   <-------TEIL<-------- ----AtMYB61                   --------->ARR11(3) <---------ARR14(2)        <---------TOE1(2)   <---- --->MYB59 --------->ARR11(3)  <---------ARR11(3) --------->ARR14(2)   <-----------HVH21<---------ATHB12   gttgtgtagataagatttgtaatcgcaaaattcgatctttgttacagttatggattcgagttactctgattctcgtcccatgttcgtgcaatcaccttat  6707600    <------MYB83    <------MYB46(1)  <--------P <-------GAMYB -------->MYB55(2) -------RAV1(1) ---------MYB46(3) -------->MYB111(2)   <---------WOX13(1)                                                            - --------AtMYB61    --------->ATHB12                                                          ------- -DAG2             <---------YAB1                                                       --------->YAB1 -----AtMYB61    <---------At4g35610       <---------ATHB12                       --------->YAB1   --   ggtggttggaatcaaacacagatgattgattcaatggctaatccaatgaacaatgaacaaggagacttgcattcactatctgaatcacaatcacaatctc  6707700  Previous    Next  AGI:  At3g19360.1    Description:  zinc finger (CCCH-type) family protein. similar to zinc finger (CCCH-type) family protein [Arabidopsis thaliana] (TAIR:AT1G32360.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65630.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571) Range:  from: 6707247    to: 6709034    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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