Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                          <---------ANAC58                                                        <---------ANAC58                                                      --------->ALFIN1                             <-                                                     ------->PIF4                                  --                                                     <-------PIF4                                 <--                                                     ------->MYC4                                 <--                                                     <-------MYC3                         --------->SPL7                                                     ------->MYC3                         ------->TEIL                                                     <-------MYC4                       <---------SPL7                                                     ------->PIF5                      <---------ANAC55(2)                                                     <-------PIF5                      <---------ANAC58                                                     <-------MYC2                      --------->ANAC55(2)                                                     ------->MYC2                      <---------ANAC58                                                    --------->TGA1a                <---------ARR14(2)                                                    <---------TGA1a                --------->ARR14(2)                  <----------DOF2                  ------------>OsbHLH66           <---------GLK1(2)                  ============================================bZIP_DOF            <---------At4g35610                 <---------ICU4                   <---------ALFIN1   <---------ANAC58 ---------------          --------->GLK1(2)                       <------------OsbHLH66------>NtERF2--------->GLK1(2)          <-----------ARR10              <---------ANAC46    <-------TEIL      <-------TEIL      <---         <---------GLK1(2)   <---------GLK1(2)   <---------At4g35610 <---------ANAC58 ---------------   atactcttcaagaatctcatctttgctcttagcttctcaactctcgtgttcagcacgtgcgcgttcgtcttgctggctcggttcagattccgtaccccta  6508900                                                                                              -------     <---------TOE1(3)                                                                      <--------     <---------TOE2(3)                                                                      <--------  ------>ZmHOX2a(1)                                                                 --------->ARR14(2) --------------AGL15                                                             --------->LBD16 ------------->AGL15                      <---------DEAR3(1)        <---------TOE2(3)       --------- ---------------AG                --------->ANAC46    <---------HSFB2a(1)       <---------LBD16   <-- ---------------AGL1       --------->ANAC58           --------->HSFB2a(1)      ----------->RAV1(2)--- >AtSPL8                   --------->ANAC58         <------ZmHOX2a(1)<---------YAB1 <---------ARR14(2) ------ZAT2                --------->ANAC46 <------NtERF2          <-----------GT1  <---------GLK1(2) >AtSPL3            <---------DEAR3(2)  <-----------HVH21 <---------LBD16---------->DOF2 <---------At4g35610   gctccttaaggtaaacaagcgtcggtctcaagcaatactcaacgtcggagaagaggatgttcgggcaatttacgattaagcccctggattcttctgcgga  6509000                                                                                                    <                                                                                                   <-                                                                                                   --                                                                                                   <-                                                                                                   --                                                                                                  <--                                                                                             --------                                                                                             <------NtERF2                                                                                           <---------TGA1a     <---------ZAT2                                                      --------->ETT(2)  ==========     --------->ZAT2                                                      <---------ETT(2)  <---------ANAC58 -->LBD16                                                <---------DEAR3(1)      <------ZmHOX2a(1)--- -LBD16                                           --------->ETT(2)    <---------ANAC46     <---------O2 -At4g35610 <---------DEAR3(2)          <---------ZAT14  --------->ZAT18 --------->ZAT14   --------->ALFIN1 >At4g35610<---------DEAR3(1)      ------>ZmHOX2a(2)    --------->ALFIN1 <---------ZAT14   <---------ANAC58 -------At4g35610                <---------ARR14(2) =================================================bZIP_DOF ------>At4g35610                --------->ARR14(2) ---------->DOF2 --------->At4g35610    <---------ANAC46   agctccaagctcgccggtgagaaaatcgaagacgggatcgagtttagagatgtcgaaagtgggcgagaagagctgtggacagaggaaaacgaggcgtggg  6509100             --------->GLK1(2)           --------->HSFB2a(1)           --------->HSFC1(2)             <------NtERF2           <---------HSFB2a(1)          <---------DEAR3(1)               <------ZmHOX2a(1)       <---------DEAR3(1)               <---------ANAC46      --------->KAN4(2)     <-----------HVH21                 <---------LBD16      ====================HOX2a_HOX2a   <------ZmHOX2a(1) ---------HSFB2a(1)                  --------->ANAC46       <------ZmHOX2a(2)          --------->GLK1(2) --------ARR11(3)                   <---------At5g28300     <---------YAB1            <---------ARR14(2) ------->ARR11(3)                 <-------TEIL             --------->ARR11(3)    <---------ANAC46 --------ARR14(2)                --------->CCA1(2)         <---------ARR11(3)    <---------LBD16 ------->ARR14(2)               --------->ARR14(2)     ---------->DOF2<------NtERF2<------NtERF2 -------GLK1(1)               ----------->ARR10====================HOX2a_HOX2a  --------->ALFIN1 ->ALFIN1<------NtERF2       <------ZmHOX2a(1) <------ZmHOX2a(1)     --------->LBD16  --------->ARR14(2) ===========================bZIP_DOF<---------LBD16  ------->GAMYB <---------LBD16<---------LBD16 ------>GLK1(1)  <----------DOF2<---------ARR14(2)--------->MYB52(1)--------->DEAR3(1)<---------GLK1(2)   aaatcttcgtcggagattcctttcgatttgaggagattcacggcggagaggataacggaaagatcattcgccggaggagcaagtcggggattctgaggaa  6509200                                   --------->ALFIN1                               <---------LBD16                         --------->ARR11(3)                         <---------GLK1(2)                         <---------ARR11(3)                                   <------ZmHOX2a(1)              --------->DAG2   <---------At5g28300                      <----------DOF2        ------            ---------->DOF2   <-----------GT1                        --------->ARR11(3)<------ZmHOX2a(1)    --------->LBD16 <---------ANAC46                            <---------ANAC46    <------ZmHOX2a(1)   caattccgagagaagaaaggtgtcttagattttcacggtgtgaggtttggaattttagatagagaggcttagagcttgaaggagaaggaggagacgagaa  6509300                                    ------->GAMYB                                   --------->MYB46(3)                                      <---------CCA1(2)                                 --------->YAB1                                        <-----------TBP                                 --------->MYB52(1)                                 <---------AHL20(2)                           --------->ANAC58                               --------->LBD16--------->AHL20(2)                           --------->ANAC58      *TSS                    <---------LBD16 <---------AHL20(2) ---->DOF2   <xxxxxxxxxxxxxxxxsmallRNA(i)      <---------YAB1 <-----------GT1       --------->AHL20(2)   agacgagagaggttgaagatgatgaagtgaagcaataacagccatatcgatgattcttcacttcttacttctcatcccggttcgattttatttatatctg  6509400                                                                                       <-------------                                                  <---------MYB52(1)                   --------->At4g35610                                             --------->ARR14(2)                        <---------At4g35610                                             <---------ARR14(2)                --------->AHL20(2)                                           <---------DEAR3(2)           --------->TOE2(3)                                          <---------DEAR3(1)          ------->TEIL<------------CBF                  <----------DOF2       ------>NtERF2      <---------ZAT14     <---------AHL20(2) ---   ttaaataaaccagaaattagcttttgaagcggtttagtatgaggccggttctgttaactactatacttcatggaccttaatataaattgggctgagataa  6509500            ----------->TBP            <---------YAB1          --------->YAB1         <---------YAB1       --------->YAB1                         *TSS       <---------ICU4                       <----------DOF2       <--------HAHB4                   ---------->ID1      --------->ICU4                <----------DOF2      <---------ATHB12           <---------ARR11(3)                                  <------ZmHOX2a(1)      <---------YAB1             --------->GLK1(2)      <---------GLK1(2)        <---------MYB52(1) --------WRI1                    --------->ARR11(3)   ----------->ARR10     <---------ZAT2          - ------->DOF2                   <---------GLK1(2)  <----------DOF2   --------->LBD16----------->GT1 <   caaagcccatcattataaaacccctagaccagaagaatctttttctctttgctctttagattctcaaaatccagagagagctcgttaggaaaaatgaagg  6509600                                                --------->ATERF1(1)                                             <--------P                                           <---------MYB46(3)                                          <---------AtMYB61                                        --------->MYB55(2)                                       --------->ALFIN1                                       <---------AtMYB61                                       <---------DEAR3(1)                                      <-------GAMYB <---------ETT(2)                                     <---------DEAR3(2)                                    <---------DEAR4(1)                                    <---------DEAR3(1)                                    <---------At1g77200                                    <---------DREB2C(2)                                   --------->DDF1--------->DEAR3(1)       <---------ARR11(3)      ---                                  <-----------HVH21 ----------->HVH21     --------->ARR11(3)    <----            --------->ALFIN1     <-----------RAV1(1)--------->ETT(2)     --------->CCA1(1)      ----- --------->ATHB12        ---------->DOF2<---------MYB46(3)<---------GLK1(2)                    <----- ---------->HVH21<------NtERF2 --------->At4g35610 <------NtERF2       --------->YAB1          <----- ---------ZAT6 <---------ANAC46<---------At4g35610<---------ATERF1(1)  --------->AHL20(2)<-----------HVH21   cagtgatagggacagtggtgtcgaacaaaatgcagatgtcggtggtggtagccgtcgacagactcttccacaataatatctacaatcgatatgtcaagcg  6509700                                                          <-----------GT1                                                         <-----------GT1                                                      --------->ARR14(2)        <-------TEIL              ------>ZmHOX2a(1)   <-----------ARR10 ------>SPL7                      =====================HOX2a_HOX2a -----ZAT18                     ----------->RAV1(2)   <---------ARR14(2) ---->ZAT18                 <------ZmHOX2a(1)   <------ZmHOX2a(2) ----ANAC58                 ===========================HOX2a_HOX2a                               <--- ----ANAC58             ---------->DOF2   <---------DEAR3(1)                        <-------TEIL ----   tacttccaagttcatggctcacgatgaaaaggactcctgtaacatcggcgatcgagtattttccccttcattttttgaatttgatatacatttgatcaag  6509800  Previous    Next  AGI:  At3g18870.1    Description:  mitochondrial transcription termination factor-related / mTERF-related. similar to mitochondrial transcription termination factor-related / mTERF-related [Arabidopsis thaliana] (TAIR:AT2G34620.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47639.1); contains InterPro domain Mitochodrial transcription termination factor-related (InterPro:IPR003690) Range:  from: 6508391    to: 6509349    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g18880.1    Description:  ribosomal protein S17 family protein. similar to EMB1129 (EMBRYO DEFECTIVE 1129), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT1G49400.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45477.1); similar to Os08g0359600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061632.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45488.1); contains InterPro domain Nucleic acid-binding, OB-fold (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold-like (InterPro:IPR016027); contains InterPro domain Ribosomal protein S17; (InterPro:IPR000266) Range:  from: 6509546    to: 6510631    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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