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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                        ------>ZmHOX2a(2)
                                                      <---------AGP1
                       <---------ALFIN1 ------>ZmHOX2a(2)
                     <---------ALFIN1   ===============HOX2a_HOX2a
              <-----------HVH21--------->ANAC46       <---------ARR14(2)
             --------->RAP2.3(3)--------->LBD16       <---------ARR11(3)
           <---------ZAT18     ------->GAMYB          --------->ARR14(2)
           <---------ZAT14    --------->MYB46(3)      --------->ARR11(3)                 --------->ARR11(1)
           --------->ZAT18   <---------At5g28300     <---------CCA1(2)                  --------->ATHB12
           --------->ZAT14  --------->MYB52(1)  ===============HOX2a_HOX2a              <--------ATHB1
     --------->HSFB2a(2) --------->ANAC46       ------>ZmHOX2a(1) --------->At4g35610  --------->ICU4
-DOF2<---------HSFB2a(2) --------->ANAC55(1)  <---------ZAT18     <---------At4g35610  <---------ATHB12
 
catttgtcccagagcgcagtcatcccacacttaaccgcgatgatcccagtcctcttggatctactagacatctcaccttgtttcgcctcaatgattcggg  5979400
                                 --------->AtMYB61
                              --------->WOX13(1)
                           --------->ORA47(1)
                          --------->DEAR3(1)
                       <---------ALFIN1
                       --------->AtMYB61
                      --------->MYB46(3)
                   --------->MYB46(3)
                  <------ZmHOX2a(2)             --------->At4g35610
                 --------->ARR11(3)             <---------At4g35610     --------->HSFC1(2)    <-----
                 --------->AGP1  --------->MYB46(3)        <---------MYB46(3)         <------ZmHOX2a(1)
                 --------->ARR14(2)             <---------ZAT2          <---------HSFC1(2)   -------
                 <---------ARR14(2)  ------->GAMYB      <-----------HVH21    <---------------AGL15
                --------->At4g35610-------->P   --------->ZAT2    ---------->DOF2   <---------TOE2(3)
         --------->YAB1--------->DEAR3(1) <---------ARR14(2)<---------At4g35610    --------->YAB1<--
     --------->LBD16  <---------MYB55(2)  --------->ARR14(2)<-------GAMYB    --------------->AGL15
 
tctgagccccgataatatcagatccaccaccgtccatcaacccagtatcggagctgaatcgtcggatgagaaagaagctactacaatgaggaagagattc  5979500
                                                                          --------->ATHB12
                                                                          <---------ICU4
                                                                         --------->ICU4
                                                                         <---------YAB1
                                                                      <------NtERF2
                                                                     ------>NtERF2
                                                                     <---------RAP2.6(3)
                                                                     <------NtERF2
                                                                    <---------ATERF1(2)
                                                                    --------->DEAR3(1)
                                                                    --------->ANAC58
                                                                    --------->ATERF1(2)
                                                                    --------->RAP2.6(2)
                                                                    --------->RRTF1(3)
                                                                    --------->RRTF1(2)
                                                                    --------->RAP2.3(3)
                                                                    --------->RAP2.3(2)
                                                                    --------->DREB2C(2)
                                                                    --------->ANAC58
                                                                   --------->ERF1
                                                                   --------->RAP2.3(1)
                                                                --------->ANAC58
                                                                --------->ANAC58
                                                                <---------RAP2.6(2)
                                              ---------->DOF2  --------->SPL7
                                           --------->HSFB2a(2) --------->SPL1(2)
                                           <---------HSFC1(1)  --------->RAP2.6(3)
<------ZmHOX2a(1)                          <---------HSFB2a(2)<---------SPL1(1)
--TEIL <------ZmHOX2a(1)              --------->ATHB12       <---------SPL7
-->GLK1(2)                          <---------WOX13(1)     <---------------AtSPL3          <--------
-------At4g35610                  --------->ATHB12        <------------------SPL14      --------->DEAR3(2)
 
agaggatgaaggagttatagaccgtattgatagaaactgattgattcgagaaaggaggcctctcggtacggccgccatgatttcgaatcgaagcgacctt  5979600
                                                           <---------ANAC58           --------->YAB1
                                                           <---------ANAC46          <---------YAB1
                               <-------TEIL                <---------ANAC58    <------NtERF2
                            --------->At4g35610          *TSS                 ------>NtERF2
    ---------->DOF2   <------ZmHOX2a(1)    --------->GLK1(1)<---------SPL7    ----------->RAV1(1)
---------------TaNAC69(2)   --------->CCA1(2)         <----------DOF2        <----------ID1  -------
 
caatggctaaagtctaaacgaagaaggagagagatgcagaaaccagaactctcaaggcttttgcgtagggttttagatgggcgacaaaatgataaccaaa  5979700
                                                                                    <---------ANAC58
                                                                                    <---------ANAC58
                                  <-----------GT1                                   <---------ANAC46
                                 <-----------GT1                               <---------ANAC58
                              <---------AHL20(2)                               <---------ANAC58
                              --------->AHL20(2)                               <---------O2
                             <---------AHL20(2)                                --------->O2
                          --------->AHL20(2)                                   --------->TGA1a
                         <---------YAB1        --------->YAB1                ------>ZmHOX2a(1)
                         <---------AHL20(2)   <---------YAB1             <---------ARR11(3)<--------
                        --------->YAB1  <----------DOF2         --------->YAB1 <---------TGA1a
                        --------->AHL20(2)  --------->YAB1   --------->YAB1 --------->TOE2(2)   ----
 <---------CCA1(2) ------------>CBF     =================================================bZIP_DOF
--->DOF2 ---------->DOF2<---------AHL20(1)<-----------TBP  <<<<<<<<<<GATA-1 --------->TOE1(2)  <----
 
gcctctatctcagaaagagagtctcaatattatttatttccctctttttataatatgtggacgataataaaaacaaaatcctacgtggcttatccattgc  5979800
                                                                                      ==============
----CBF               <-------TEIL    ------------>CBF       <---------GLK1(2)        ------>ZmHOX2a(1)
------->RAV1(1)     --------->At5g28300*TSS          --------->WOX13(1)               ==============
------ID1       --------->MYB52(1)   --------->TOE2(3)  --------->TOE2(3)          ---------->ID1
 
gacatataaaacaaaaacaaaacggtacatgaaaattttgcctcaattttcaaaatcaatctcaaattctcaaatgtctgtgattcgtccttctccgatt  5979900
                  <---------TOE1(2)
                 <-----------RAV1(2)
               ------>ZmHOX2a(2)
              --------->GLK1(1)
              <---------GLK1(1)                                        <---------DEAR3(1)
              <------ZmHOX2a(2)                                     --------->DEAR3(1)
             --------->ARR11(3)                                     <---------DEAR3(1)       -------
             <---------ARR11(3)                                     --------->ETT(2)      <---------AtMYB61
             <---------ARR14(2)                                     <---------ETT(2)      <---------DEAR3(1)
             --------->ARR14(2)                                   <-----------HVH21      <------NtERF2
             <---------ARR14(3)                                  <---------O2          <---------DEAR3(1)
             <-----------ARR10                                   --------->O2        <-----------HVH21
             <---------AGP1                                    ------>NtERF2        <---------ZAT2
            <---------At4g35610                               ----------->HVH21     --------->ZAT2
            <---------CCA1(2)                                 --------->DEAR3(1)  --------->LBD16  -
         <-------TEIL                                      ----------->HVH21     <---------TOE2(1) <
    --------->LBD16                                        --------->DEAR3(1)    <---------TOE1(1) -
=====================HOX2a_HOX2a                          <---------At4g35610 <---------ARR14(2)  <-
======================HOX2a_HOX2a   <----------DOF2       --------->At4g35610 --------->ARR14(2)<---
 
ccaattccgagatgcagatctcaggtactgcatcgtcgtctttattcgattcaattgattcagcgacgacgtcgacggtggaatccgaggtcggaggtgg  5980000
                                      <---------ANAC46
                              --------->LBD16
                            <---------LBD16
  --------->TOE1(2)     <-----------HVH21  ----------->GT1    <----------DOF2
-->ALFIN1     ----------->HVH21   <------NtERF2              <---------ANAC58         <---------ANAC46
-------->ARR14(2) <---------DEAR3(2) <------NtERF2    <---------MYB46(3)             >>>>>>>>>MYB98
---------ARR14(2) ------>NtERF2   --------->ATERF1(1)--------->ALFIN1               --------->MYB52(1)
-------->ARR11(3)<---------DEAR3(1)  --------->At4g35610     <---------ANAC58      ----------->HVH21
-----ZmHOX2a(1)  <---------RAP2.3(2) <---------At4g35610--------->ALFIN1<----------DOF2------->GAMYB
------ANAC46 --------->DEAR3(2)  <---------ATERF1(1) <---------AtMYB61<---------At4g35610    <------ZmHOX2a(1)
 
aggatactgcgattgaatcgacggctcggtctccggaggcagcgggagggaaaatggtggtggagcttgttggagctttcaacgaagtaacggagaggat  5980100
                --------->O2
                <---------O2
             --------->ETT(2)
             <---------ETT(2)
          <---------MYB46(3)
        <-------GAMYB
        <---------ANAC58
        <---------ANAC58                           --------->ARR11(3)
       <------MYB46(1)                           --------->ANAC58
       <------MYB83                              --------->ANAC58                            <------
       <---------MYB46(3)              ---------->DOF2                                      <-------
      --------->MYB59               <----------DOF2<---------ARR11(3)           ------>ZmHOX2a(1)
      <---------AtMYB61           <---------------AGL15             <---------At5g28300  -----------
    <---------MYB52(1)            --------------->AGL15            <-----------GT1     <---------At4g35610
 
gaattcggtttggttgtcgacgtcttcgtctaggttactctttaaagctctcaagctctcgattccgattttacagtctcttcctcttgcctctgatggt  5980200
                                           <---------GLK1(1)
                                           --------->GLK1(1)
                                           <------ZmHOX2a(2)
                                          --------->ARR14(2)
                                          <---------AGP1
                                          <---------ARR14(2)
                                          <---------ARR11(3)
                                          <---------ARR14(3)
                                          --------->ARR14(3)
                                          <-----------ARR10
                                          --------->ARR11(3)    <---------ANAC58   <---------ANAC46
    ------>ZmHOX2a(1)                    <---------CCA1(2)    <------ZmHOX2a(2)    <---------ANAC58
---MYB46(3)                    --------->YAB1   --------->LBD16 <---------ANAC58   <---------ANAC58
--AtMYB61   <---------TOE2(3) <---------ATHB12 <-----------RAV1(2)         <-----------GT1         <
>HVH21<----------DOF2         <---------YAB1------>ZmHOX2a(2)--------->ARR14(2) <---------GLK1(2)  -
 
cgctctcctctttctaaggctctctcactctctatcattctcgcagatctccaggtttactctcgatccttgcatttttcacagtttcttgtttagatga  5980300
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AGI:  At3g17465.1   
Description:  RPL3P (ribosomal protein large subunit 3P); structural constituent of ribosome. Identical to 50S ribosomal protein L3-2, chloroplast precursor (RPL3B) [Arabidopsis Thaliana] (GB:Q9LRN8;GB:Q93WN7); similar to ribosomal protein L3 family protein [Arabidopsis thaliana] (TAIR:AT2G43030.1); similar to unknown [Populus trichocarpa] (GB:ABK95213.1); contains InterPro domain Ribosomal protein L3; (InterPro:IPR000597); contains InterPro domain Translation elongation and initiation factors/Ribosomal, beta-barrel (InterPro:IPR009000)
Range:  from: 5977823    to: 5979658    Orientation: Reverse
Links:  TAIR  MIPS 
 
AGI:  At3g17470.1   
Description:  RelA/SpoT domain-containing protein / calcium-binding EF-hand family protein. similar to RSH3 (RELA/SPOT HOMOLOG 3), catalytic [Arabidopsis thaliana] (TAIR:AT1G54130.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO70932.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain RelA/SpoT; (InterPro:IPR007685)
Range:  from: 5979840    to: 5982121    Orientation: Forward
Links:  TAIR  MIPS 
 
 
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