Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Publications Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   1        10        20        30        40        50        60        70        80        90        100                                                                  <---------PCF2                                                                <-----------HVH21         <-------TEIL                                              <------NtERF2    <------MYB83            <------MYB83                                     ---------->DOF2           <------MYB46            <------MYB46<- ------>ALFIN1               <-------TEIL  <------NtERF2     --------->ALFIN1       <---------AtLEC2   gtgtgtgtattttttttctgagatttattggttcgtctataatgcggcagcttcttgtagtaagtgggtcatgagtgtatttttttggatggtgcattta  5705300                                                                             ---------->DOF2        - ----------RAV1(1)                                            <-----------HVH21       ----------->GT1   tatgttgttgattttcttacacactaattttttttgagtttatcatgaaatgtttgatcatcgatgtcatatgaaatgccaaagatgaccgtaaatttcg  5705400                                                  <---------O2                                                  <---------TGA1a                                                  --------->TGA1a                         ===================================bZIP_DOF          ---------->DOF2<----------DOF2   ----------->HVH21          ==================================================bZIP_DOF ---------->GT1   ------->TEIL      ------>NtERF2------->TEIL                  <-----------GT1   catcgtaactcgcaaagatgaaccttactttgagacgctgcctgcgtgatggacgtgagacgcataacgcatactattaaattaccagacgctcgtggac  5705500                                                                ---------->DOF2  ---------->ID1 <---------ALFIN1                      <-------TEIL     <----------ID1  ------------>CBF            -   acaacacttcaataccgaaaactaaactaatcacattgtgatacgttttgtattcagagagccaaaaaaaggcttacaattttgtcgttatgtggattag  5705600                       ------->TEIL                <-----------TGA1               ------->GAMYB              <------------AtMYB77              <------------MYB.PH3(1)                               *TSS                   <---------            <-----------GT1                      <--------HAHB4  ----------->GT1      <----------DOF2 ----------->CBF<-----------HVH21                -------->ATHB1---------->DOF2     <---------ALFIN1   ccttcaatttgttgtaaccgtcatgtatcaaggaacataaaactattagaattattattctaatataaagtaattcatttcactcacactttattaccat  5705700                                                         ---------->DOF2----------->RAV1(1)  <-------                                                    <---------------AGL15      ----------->GT1  <----                   ---------->DOF2              <----------DOF2   ----------->RAV1(1)      --------->ALFIN1              <-----------------AGL1       <------ZmHOX2a(1)      <---------ALFIN1       <-----------RAV1(1) --GT1       ------>NtERF2         <---------ALFIN1 --------------->AGL15  ------->GAMYB --------->ALFIN1   aaaacatttattttgcgcctataaaggcatttcagctccaccgtaggaaactttctcttgaaagaaacccacagcaacaaacagagaaaatgtgtggcgg  5705800                                                                                                 ----                         <-----------HVH21                                                     <-----                         <-----------TGA1                                                     ------>NtERF2                        <---------O2                                                         --------                        --------->TGA1a                                                     <------NtERF2      <-----------GT1   --------->O2                 <---------TGA1a                       ------>NtERF2 --ABI4(1)              <---------TGA1a              --------->TGA1a <-----------HVH21     --------->ABI4(1) --NtERF2           <---------ALFIN1       ----------->GT1   <------ZmHOX2a(1)          ------>NtERF2   tgctattatttccgattatgcccctctcgtcaccaaggccaagggccgtaaactcacggctgaggaactctggtcagagctcgatgcttccgccgccgac  5705900                                                --------------->AtSPL8 ----------->RAV1(2)                      ------->GAMYB -->NtERF2                              ------>MYB83       ------>ZmHOX2a(1) -NtERF2                                -------->P <-----------GT1 --->HVH21       <---------ALFIN1       ------>MYB46------->TEIL   gacttctggggtttctattccacctccaaactccatcccaccaaccaaggtatgtactctcctattaatcataaacaaaaatacaaaatcattcaaaaac  5706000                     <----------DOF2                 <-----------GT1  ----------->GT1                  ----------->GT1                ---             <-----------GT1   ---------->DOF2                    ----------->GT1     ---------->ID1   acaaacatatagttttttctaacctttttagcaaaaaggtaaaataatatttctggaacttacggaagatgataaaaaaaaaatatttgtggttttggta  5706100                                          ----------->GT1                                       XXXXXXXXXXXXXXXXXXXX>MIR4243                                  <-------GAMYB                                 ----------->GT1                              --------->ALFIN1           <------ZmHOX2a(1)--------->ALFIN1                        ----------->GT1               <-- -------->GT1               <-----------RAV1(1)         <----------DOF2                     ---------   atgtaatttatcaggattatttaattatctgtgtggggttaaaattgtaaattttgaactttggggaatccggtgaaaattttgaagttaacgtgaaaga  5706200  Previous    Next  AGI:  At3g16760.1    Description:  tetratricopeptide repeat (TPR)-containing protein. similar to ATTOC64-III (ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-III), binding / carbon-nitrogen ligase, with glutamine as amido-N-donor [Arabidopsis thaliana] (TAIR:AT3G17970.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN69220.1); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Tetratricopeptide TPR-1 (InterPro:IPR001440); contains InterPro domain Tetratricopeptide region (InterPro:IPR013026) Range:  from: 5703019    to: 5705319    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g16770.1    Description:  ATEBP/ERF72/RAP2.3 (RELATED TO AP2 3); DNA binding / protein binding / transcription activator/ transcription factor. Identical to Ethylene-responsive transcription factor RELATED TO APETALA2 3 (RAP2-3) [Arabidopsis Thaliana] (GB:P42736;GB:O23105); similar to RAP2.12 [Arabidopsis thaliana] (TAIR:AT1G53910.3); similar to putative ethylene responsive element binding protein 2 [Gossypium hirsutum] (GB:AAX68525.1); contains InterPro domain DNA-binding, integrase-type; (InterPro:IPR016177); contains InterPro domain Pathogenesis-related transcriptional factor and ERF, DNA-binding; (InterPro:IPR001471) Range:  from: 5705668    to: 5707029    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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