Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Publications Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   1        10        20        30        40        50        60        70        80        90        100                                                                          >>>>>>>>>ARR2       <-------GAMYB                 <--------HAHB4                                         >>>>>>>>>ARR1      <------MYB46              <--------HAHB4                            ------>ZmHOX2a(1)                  <------MYB83   ctaactctaaaaaccatcattattattattattattttttttctaatattttggcatcctacaatttagtttatgattgtgttgattattatttggttgt  5061600                                                                             <-----------GT1        <---------ALFIN1                                             <-----------GT1   ------->TEIL----------->GT1                                 ----------->GT1   atttgcatctacacattaagttaaacattgattttaaaaattaacatgaacaaaatgaatacttactgttaaaaccttataacaatcagatttttttttt  5061700                                                                   ----------->GT1                                                                 ---------->DOF2                                                    --------------->AGL15                                                    <---------------AGL15                                                   <-----------------AGL1                                                   ----------------->AGL3                                                   ----------------->AGL1                                                   ----------------->AGL2                                                   ----------------->AG        ----------->GT1                    <----------DOF2   ---------->DOF2              --------->ALFIN1 ---------->DOF2                      <------ZmHOX2a(1)  ---------->DOF2     ---------->DOF2   aaacaaagaatggaaaaaaatgaataaatttgggaaacgaggaagctttggttacccaaaaaagaaagaaagaaaaaataaaagtattgaatgtggagat  5061800                                                                                                  ---  <------ZmHOX2a(1)                                               ------>ZmHOX2a(1)           <------ ----------->GT1                    <-----------TGA1   <---------ALFIN1                    <---------   gagaggaaaaaaacacttactgtcatcttacccagttgcgtcatcatcaaacccacaacactctcttcctcttccctcttccttctgcttattttacttt  5061900                                                                  <<<<<<<<<<WRKY38                                                                  ------------>CBF                                                                  <<<<<<<<<<WRKY26     <-----------GT1                                              <<<<<<<<<<WRKY43  <----------DOF2                         <----------DOF2       <------MYB83 ------->ID1                    ---------->DOF2                 <------MYB46 ----DOF2             ----------->GT1---------->DOF2            ----------->GT1 --GT1               <---------------------WRI1              <------------CBF      <----------DOF2   ttctctttaaccattttcccgagagagaaaaataaaaagaaaagctttctctgggtttttcttgattggtcaattacacatctccctttctctcttctct  5062000                                                                        ------>MYB83                          *TSS           ------>ZmHOX2a(1)              ------>MYB46              ---              <----------DOF2  <----------DOF2            <-----------GT1               <----------DOF2   ctctcaccttcgcttgctttgcttgcttcatctctttggtctccttcttgcgttttctatttactacacagaccaaacaatagagagagactttaagcta  5062100                                                                    >>>>>>>>>ARR2                                                                    >>>>>>>>>ARR2            ----------->ARR10                                       >>>>>>>>>ARR1    ---------->DOF2                                                 >>>>>>>>>ARR1                  <- -------->GT1                  <--------P     <-----------GT1      <------ZmHOX2a(1)           ------   tagaaaaaaagagagagattctctcaaatatgggttagtccacaattttcactaaacctcttcttcttaggattgtttttagggttagggttttgaggtg  5062200                                                                                     ------>NtERF2                                                                                     --------->ABI4(1)                                                                                   <------NtERF2                                                                                  --------->ABI4(1)                                                                                 <---------ALFIN1                                                                                <------NtERF2                                                                               --------->ABI4(1)                                                                               ------>NtERF2                                                                              <---------ALFIN1                                                                             <------NtERF2                                                                            --------->ABI4(1)                                                                          <------NtERF2                          ------>ZmHOX2a(1)                              ------>NtERF2<------NtERF2                          <----------DOF2                      ------>NtERF2------>NtERF2          <- -----ZmHOX2a(1)         --------------->AGL15   <---------ALFIN1     <-----------HVH21 ------>NtERF2 --->ALFIN1         <-------TEIL                ------>ZmHOX2a(1) <---------ALFIN1------>NtERF2   ---   aggagagcaagtatgcgggagtttcatcctttttgagttactctggattcctcaccctctaacgacgaccaccgtcgccgccgccgccgccgtctcgacg  5062300                                              ------>ZmHOX2a(1)                                           ------>NtERF2                                       ------                                          <---------ALFIN1                                <------NtERF2                                         <------NtERF2                                    <-------GAMYB                                        --------->ABI4(1)                                 -----------                                        ------>NtERF2                              <------NtERF2-----                                       <---------ALFIN1                            ------>NtERF2<----                                      <------NtERF2                               ----------->HVH21                                     ------>NtERF2                              <------NtERF2<-------                                <---------ALFIN1                                ------>NtERF2<------NtERF2 ---------TaMYB80             <-----------HVH21                       <-----------HVH21  ------>NtERF2 ------->TaMYB80----------->HVH21   ------->GAMYB            <------NtERF2<-------GAMYB<------NtERF2   aatatgctctaccaatgtctgacgaccaattccatcacccgccgcctccttcttcaatgaggcaccgttctacgtcggatgcggcggacggcggctgcgg  5062400                                                                                                -----                                                                                                <----                                                                                                <----                                                                                       ----------->HVH21                                                                                      <-----------HVH21                                                                                     --------->O2                                                                                     ================                                                                                     <---------TGA1a                                                                                   <---------ALFIN1                                                                                  ---------------->PIF3(2)                                                                     <---------ALFIN1<---------O2                                                                     <---------AtLEC2--------->TGA1a                                                             ==================================bZIP_DOF >NtERF2                                                     ==================================bZIP_DOF >RAV1(2)                                              <---------ALFIN1     ---------->DOF2    ------ ->NtERF2         --------->ALFIN1   -------->P        ----------->RAV1(1)  ========================= --NtERF2   <-------TEIL        <------MYB83  ---------->DOF2---------->DOF2========================= --ABI4(1) --------->ALFIN1     <------MYB46  =================================================bZIP_DOF   cgagattgttgaggtgcaaggtggtcacattgttcggtctaccggaagaaaagaccgccacagcaaagtctgcacggctaaagggccacgtgaccggcgc  5062500  Previous    Next  AGI:  At3g15030.1    Description:  TCP4 (TCP FAMILY TRANSCRIPTION FACTOR 4); transcription factor. similar to TCP3 (TEOSINTE BRANCHED1, CYCLOIDEA AND PCF TRANSCRIPTION FACTOR 3), transcription factor [Arabidopsis thaliana] (TAIR:AT1G53230.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39371.1); contains InterPro domain Transcription factor, TCP (InterPro:IPR005333) Range:  from: 5062026    to: 5064122    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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