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Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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1        10        20        30        40        50        60        70        80        90        100 
                                                    <---------AHL20(2)
                                                    --------->AHL20(2)
                                                    <---------ICU4
                                                    --------->ATHB51
                                                   <---------AHL20(2)
                                                   <---------AHL20(1)
                                          <---------HSFB2a(2)              <---------AHL20(2)
                                          --------->HSFB2a(2)             --------->AHL20(1)
                                         ------>ZmHOX2a(2)        ---------->DOF2
                                        --------->GLK1(1)       >>>>>>>>>E2Fc
     <---------HSFB2a(2)                <------ZmHOX2a(2)       >>>>>>>>>E2Fd
   <-------TEIL                        <---------AGP1          --------->LBD16
  --------->CCA1(2)                    <---------ARR14(2)      ------>NtERF2
  --------->ARR14(1)                   --------->ARR14(2)     --------->ANAC58                   ===
 --------->ARR11(1)                    <---------ARR11(3)     --------->ANAC46                   <--
 <---------ARR14(2)                    --------->ARR11(3)     --------->ANAC58                  <---
 <---------GLK1(2)                     --------->AGP1        <---------MYB55(2)                 ----
 --------->ARR14(2)                   --------->At4g35610    --------->MYB46(3)            ---------
---->YAB1                     ----------->RAV1(2)  --------->AHL20(2)     --------->AHL20(2)  ------
----ATHB51       ---------->DOF2      <---------CCA1(2)<-----------GT1    <---------AHL20(2)<-------
 
ataagattcgagacaagatgaaaagaaacagtaacctgatcagatctcgaacaaattatttcgacccgccaaagaaatttaatggaaatttgaaaaccgg  3985200
                      --------->MYB46(3)
                     --------->ANAC58
     ---------->DOF2 ------>MYB46(1)
    <---------WRKY12 ------>MYB83
    <---------WRKY38(1)--------->ANAC46                     --------->ANAC58
================HOX2a_HOX2a                       <--------P--------->ANAC58                  ------
----ZmHOX2a(2)       --------->ANAC46            <---------MYB52(1)                         --------
------ARR14(2)       --------->ANAC58          ------>ZmHOX2a(2)                           ---------
----->ARR14(2)     --------->AtMYB61          <------ZmHOX2a(2)                           --------->ANAC46
>MYB52(1)         --------->MYB46(3)         <---------ARR14(2)                        ------>MYB83<
--->LBD16  <------ZmHOX2a(2)                 --------->ARR14(2)                        <-----------HVH21
--LBD16  <------ZmHOX2a(1)              <-----------GT1--------->ZAT18  ----------->GT1------>MYB46(1)
 
atcagagtcaaaggatcaaaaaccacccaaaaccccaagaattttacagatcggtaagtgaacaagtcaattgcgatgaaaaaactcacctatcagccac  3985300
                                        --------->ANAC46
                                        --------->ANAC58
                                     <------ZmHOX2a(2)
                            --------->YAB1
               --------->HSFB2a(2)  --------->ARR11(3)
               <---------HSFB2a(2) <---------At4g35610                        <---------ANAC58
  <---------ANAC58          <---------ICU4                                    <---------ANAC46
  <---------ANAC58         <---------YAB1                                <---------ARR14(2)
>NtERF2       ------>ZmHOX2a(2)<-----------GT1                           --------->ARR14(2)
->MYB46(3)   <------ZmHOX2a(2)<---------YAB1  --------->YAB1       <---------ALFIN1       ------->TEIL
>At4g35610<---------YAB1   --------->ICU4     --------->TOE2(3)  <---------ALFIN1  <----------DOF2
---------GLK1(2)    --------->MYB46(3)  --------->ANAC58  --------->ARR14(2)  <---------ANAC58
 
cagtttcttgatcacgatcgcgaaccacttattattacagatcacgctatcttaaaacccaaattcccccatacccgatttgtgtgttttatgtatatat  3985400
                                                           ---------->DOF2
                                                         <---------AHL20(2)
                                                       --------->CCA1(2)                           <
                                                      --------->ARR11(3)                           -
                   --------->YAB1                     <---------ARR11(3)                       <----
               --------->ICU4                       <---------TOE2(3)                          <----
           ----------->GT1                     --------->GLK1(2)                      <---------AHL20(2)
        ---------->DOF2                       <---------GLK1(2)         <---------GLK1(1)      <----
 
aaaacaatgtacaaaggaaaaattagaatcgatttatacaaaaactcgagattctaagatttaaaagaaatgaagaattctcgagttattttttttttgt  3985500
                                                         --------->ANAC58
                                                         --------->ANAC58
                                                        *TSS
                                                       ---------->DOF2
                                                  --------->bZIP60(1)
                                                  --------->TGA1a
                                                  <---------TGA1a
                                                  ----------->GT1
                                                  ================bZIP_DOF
                                                  <---------O2
                                                  ================bZIP_DOF
                                                  <---------ANAC58
                                                  <---------bZIP60(1)
                                                  <---------bZIP60(2)
                                                  --------->ANAC55(2)
                                                  <---------ANAC55(2)
                                                  <---------ANAC58
                                                  <---------ANAC55(1)
                                                  <---------ANAC46                          <-------
                                                 ----------->STF1                           --------
      --------->At5g28300===================================bZIP_DOF                       <--------
    <---------ANAC46     <----------DOF2        <---------TGA2(2)                        --------->YAB1
   <---------LBD16  <---------MYB52(1)       --------->At4g35610                        <---------YAB1
<-------GAMYB      <-------GAMYB   ---------->DOF2--------->O2                        --------->YAB1
-----------RAV1(1) =========================================MYC_MYB                 <-----------TBP
-------->ALFIN1   <---------MYB46(3)         <---------At4g35610                <----------DOF2   --
-----ANAC58 --------->GLK1(2)      =========================bZIP_DOF      <---------GLK1(1)---------
-----ANAC58 <---------ARR14(2) =============================bZIP_DOF      --------->GLK1(1)<--------
-----ANAC46 --------->ARR14(2) ---------->DOF2 ----------->TGA1<------------CBF <---------DAG2<-----
 
gtgtgttgcggtaagaatccgtcgttgtctttagaaaagaaagaaggaagatgacgtgaaaagccccattgaaacagaaacccctttttttataatcatt  3985600
                    --------->DAG2
                   ---------->DOF2
               --------->AHL20(2)
           <---------AHL20(2)
           --------->AHL20(2)
           --------->AHL20(1)
--ICU4     <---------AHL20(1)       --------->ANAC58
->YAB1<---------AHL20(2)            --------->ANAC58
-ATHB12   <---------AHL20(2)   <-----------GT1                      <---------MYB46(3)
--------->GT1  <---------AHL20(2)   --------->ANAC46              <---------At4g35610
>ICU4 --------->AHL20(2)  <---------AHL20(2)             --------->At4g35610
-YAB1--------->AHL20(2)   <---------YAB1                 <---------At4g35610      ---------->DOF2
----YAB1  --------->AHL20(2)<------------CBF  --------->MYB52(1)  <-------GAMYB----------->GT1    <-
 
cttgtaaattaaaataaattaaaaaagtttttattgaccacacaaataacaacgggtttgagatgaggcagttgttgtaaaccggtaaaccggctattga  3985700
                                                                                       <---------ICU4
                                                                                    --------->YAB1
                                                                                   --------->ICU4
                        --------->ZAT6                                        --------->HSFB2a(2)
                 ----------->GT1                                              <---------HSFB2a(2)
                <---------YAB1                     --------->ANAC58           --------->LBD16
                <---------TOE2(3)                  --------->ANAC58          <---------LBD16      --
             <---------AHL20(2)            --------->LBD16                  <---------LBD16       <-
----------HVH21 <---------TOE1(3)        <---------LBD16           ------->GAMYB  <---------KAN4(2)
 
cggtcacccttgtaaatttatggtaaaacactaaaacccctctctccggttaacaggctattgatggtaaccctctctctccgggaatcatcagttcata  3985800
                                                                                              ------
                           --------->GLK1(2)                                          <---------PCF2
                           <---------ARR11(3)                                         <---------ANAC58
                           --------->ARR11(3)                                         <---------ANAC58
             <------MYB46(1)                                                 <---------WOX13(1)<----
             <------MYB83 <---------GLK1(2)                                --------->ATHB12------>ZmHOX2a(1)
          <---------ARR14(2)      <---------YAB1                          <---------YAB1   <--------
          --------->ARR14(2)  <----------DOF2----------->GT1        <----------DOF2--------->ALFIN1
   ---------->DOF2<-----------HVH21         ------>ZmHOX2a(2)     <---------ZAT14<---------ANAC46
------------->AGL15   --------->At4g35610 <---------ARR14(2)      --------->ZAT14<---------ANAC58
--------------AGL15   <---------At4g35610 --------->ARR14(2)----------->RAV1(1)  <---------ANAC58
 
accccttaaagaagataggtttgtcagaagaatctttattttagggatcggataaaaacaatacaacagtgctgtttgtgattggagtggggtccttttt  3985900
                                  ------->MYC4
                                  ------->PIF5
                                  <-------MYC4
                                  ------->MYC3
                                  <-------PIF5
                                  <-------MYC3
                                  <-------MYC2
                                  ------->MYC2
                                 ======================bZIP_DOF
                                 --------->ANAC46
                                 ======================bZIP_DOF
                                 --------->TGA1a
                                 --------->PIF3(3)
                                 <---------PIF3(3)
                                 <---------TGA1a
                                 --------->O2
                                 <---------O2                                    <---------bZIP60(1)
                               <---------ALFIN1                                  --------->bZIP60(1)
                         <---------ARR11(3)                                 <-----------GT1
                      <----------DOF2       ---------->DOF2        --------------------->WRI1
                      =====================bZIP_DOF                <----------DOF2
--->AHL20(2)    --------->At4g35610--------->ALFIN1               <---------ANAC58<-----------TGA1
-------GT1   ==============================bZIP_DOF ----------->HVH21 ----------->GT1
--DOF2       ---------->DOF2 <----------------PIF3(2)             <---------ANAC58<-----------HVH21
 
aatatactagtactacaaaagctgtctttatcttccacgtgggtagagaaagcctgtgacaactccattgctttggtaataacgtcgtcacaaggttttt  3986000
                                                          ------->MYC3
                                                          <-------MYC2
                                                          ------->PIF4
                                                          ------->MYC2                 --------->ANAC55(2)
                                                          <-------PIF5           <-------MYC3      <
                              --------->ARR11(3)          <-------MYC3           ------->MYC2      <
                            ------->TEIL                  ------->MYC4           <-------MYC2   <---
                  --------->YAB1                          ------->PIF5           ------->MYC3   <---
                 <---------ZAT6              <---------ANAC55(2)     ------>NtERF2     <---------ANAC55(1)
                <---------WOX13(1)           --------->ANAC55(2)    <---------PCF2     <---------ANAC46
               <---------ANAC58 <---------ANAC58          <-------PIF4         ------->TEIL <-------
               <---------ANAC58 <---------ANAC58  <---------REM1(1) <----------ID1     <---------ANAC55(2)
 
taagtgttcattcaacttgagtgataacatgaatttcttgatgagattacatgttgaagcatgtgctaatggggccaaaatgaacgtgttatgtgtttta  3986100
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AGI:  At3g12560.1   
Description:  TRFL9 (TRF-LIKE 9); DNA binding. similar to TBP1 (TELOMERIC DNA BINDING PROTEIN 1), DNA binding [Arabidopsis thaliana] (TAIR:AT5G13820.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN72738.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain SANT, DNA-binding; (InterPro:IPR001005); contains InterPro domain Homeodomain-like (InterPro:IPR009057)
Range:  from: 3981990    to: 3985557    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
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