Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                               <---------WRKY12                         *TSS                               ------------>CBF        <---------ARR14(2)                              <---------ZAT14        --------->ARR14(2)    <---------SPL7            ---------->DOF2  <---------ZAT14       <----- ------------AG        <-----------HVH21             ----------->GT1 <---------ALFIN1<-----------TBP ------------AGL1     ------->GAMYB   <---------GLK1(2) --------->ZAT14  --------->ZAT14 <---------AHL20(2) ----------->AGL1    --------->MYB46(3)      <---------At4g35610   >>>>>>>>>>>>>>>>>LFY  --------->AHL20(2)   aacttcggcaaatactaaaatcaacagtcagtcgtacaaagaaactctgcttatacagtaaagtcaatgggccactgttctaagcccatatataatttta  3857400                                                                          <---------ANAC46                                                                        --------->MYB52(2)                                         --------->ANAC58             <--------P                                         --------->ANAC58           <------MYB83                                    <---------ZAT14                 --------->MYB55(2)                                    <---------ZAT18                 --------->MYB52(2)                                    --------->ZAT18                 <---------MYB46(3)                                 <---------At5g28300                <------MYB46(1)                --                                <---------WRKY18(1)                <---------AtMYB61              <--                               --------->WRKY12                   <--------P                      ---                               ----------->HVH21            ---------->DOF2    ------->TEIL     ----- ----HSFB2a(2)---------->DOF2  --------->WRKY38(1)    ----------->GT1<-------GAMYB ------->TEIL<-----   gaagcccatagaatacaaaagagtcaagaagcattgaccgcacaagaaaaaaacaattgttaaaaagggttggttagtgtgtatgtatatatgaaatgca  3857500                                                         <---------DAG2                                                         <----------DOF2                                                     <------ZmHOX2a(1)         ======================                                             <---------------AGL15             <---------------AGL15       <-----------GT1                      ===================================================MADS_MADS   --------->TOE2(3)         <---------YAB1 ----------------->AGL2             <----------DOF2  <---------ICU4            <-------GAMYB   --------------->AGL15              --------------->AGL15  --------->YAB1           <---------MYB46(3)--------------->AGL15          <-----------GT1 ----->GAMYB              <--------P        <-----------------AG        <---------AHL20(1) -------MYB52(2)       <---------YAB1       <-----------------AGL1      <---------AHL20(2) ------>MYB46(3)       <---------TOE2(3)    ----------------->AGL1      --------->AHL20(1) ------>RAV1(1)   <---------AHL20(2) <-------TEIL  <---------TOE2(3)    --------->AHL20(2) -----ID1        --------->AHL20(2) <--------P     <---------ANAC55(2) --------->AHL20(2) ---------->DOF2   acaaacattatacagcccattaaatatggttgttataggtagatgtccccattaaggaactttatccagcccattaaattactttacagagtaaaagaga  3857600                                                                   <-----------HVH21                  --------->DOF5.7(2)                  --------->AHL20(2)                <---------ANAC58                      <---------AHL20(2)                <---------ANAC55(2)                <---------AHL20(2)                <---------ANAC58                   --------->AHL20(2)  <-------GAMYB                --------->ANAC55(2)               --------->ICU4   ------------>AtMYB77             <---------MYB52(1)                 --------->YAB1--------->AHL20(2)         <---------At5g28300                 ----------->GT1  <---------AHL20(2)        ------------>AtMYB77               --------->ICU4 --------->AHL20(2)        <-----------GT1                 <---------AHL20(2)--------->ICU4      --------->CCA1(2)                 --------->AHL20(2)<---------ATHB51      <----------DOF2     <---------ARR11(3)               <---------------AGL15<---------ICU4   --------------->AGL15     --------->ARR14(2)            --------->ICU4 --------->AHL20(2)  --------->MYB52(2)----------->GT1     <---------ARR14(2) ------>MYB46(1)--------->AHL20(2) <---------AHL20(2)<---------------AGL15     --------->ARR11(3) ------>MYB83--------->ATHB12  --------->AHL20(2)<---------MYB52(1)   ----------->ARR10  <---------MYB59 ======================================================MADS_MADS =====================================================MADS_MADS<---------AHL20(2)    ---------->DOF2   gagagaagatttacagttacgttaccaaattttcgaaatgatttaattagtaataaataaataattaaatgtcagttactctctttagaaagctaaataa  3857700                                                                               ------>ZmHOX2a(2)                                                                              <------ZmHOX2a(2)                                                                             <---------ARR14(3)                                          <---------TOE1(2)                  --------->ARR14(3)                            <---------ANAC58                                 <---------ARR11(3)                            <---------ANAC58                                 --------->ARR14(2)     <                  <---------O2           ------>ZmHOX2a(1)                   <---------ARR14(2)     <                  --------->O2     <---------ATERF1(1)                       --------->ARR11(3)     <              ------>MYB83  <---------MYB46(3)                               --------->AGP1         -              ------>MYB46(1)    <---------ANAC58                           --------->GLK1(1)      <-            --------->AtMYB61    <---------ANAC58                      --------->At4g35610        <--           --------->MYB46(3) --------->ALFIN1                       --------->MYB46(3)        <----- <---------ZAT2--------->MYB46(3)<---------PCF2       --------->ARR11(3)   ----------->ARR10   <----- <---------At4g35610      <-----------HVH21     ---------->DOF2    --------->MYB52(1)         ------- --------->At4g35610----------->HVH21 ------>ZmHOX2a(1)        --------->GLK1(1)              -------   gacagctgtttccaccaacaacgtgactggtcgtggggtcctccttcgttcaaagtgatattcagaaatcaacggctgagatcttctccatcaatattta  3857800                                                                                                    -                                                                                                 ----                                                                                                 ----                                                                                                 ---- ---------ANAC58                                                                                 <--- ---------ANAC55(2)                                                                            ------ ---------ANAC58                                                                               <----- -------->ANAC55(2)                                                                          -------- --------LBD16                                   *TSS                                     --------->ANAC46 ---------GT1                         <---------At4g35610                                ------------ ----ICU4                            --------->LBD16                                  <---------ALFIN1 ----AHL20(2)                        ------>NtERF2                                    --------->ANAC46 -->ICU4                   ------------>CBF <---------GLK1(2)                      --------->ZAT14 -- -->AHL20(2)    <----------DOF2    <---------LBD16                <---------MYB52(1)<---------ALFIN1<   ttacgggcctattccttccttttttaaacttcaattctccggctcacattctcttcttcattcgctccgtttctctctcaaaaactacacacccgtacca  3857900           ======================HOX2a_HOX2a     ------>MYB83     ------>MYB46(1)   --------->DEAR3(1)      ------>ZmHOX2a(2)   <---------ALFIN1       <------ZmHOX2a(2)   <---------MYB111(2)   --------->ARR11(3)   --------->AtMYB61     <---------ARR11(3)  --------->MYB46(3)     --------->ARR14(2) -------->AtMYB61        <---------ARR14(2) ----->ANAC58           <---------GLK1(1) ----->ANAC46      ==============HOX2a_HOX2a ----->ANAC58      ------>ZmHOX2a(1) ------ALFIN1  <---------ARR14(2)                          <---------HSFB2a(2) --->AtMYB61   --------->ARR14(2)                          --------->HSFB2a(2)         --------->TOE2(3) ----ALFIN1------>ZmHOX2a(1)  <---------ALFIN1         --------->GLK1(1)        <---------GLK1(2) ->SPL7<---------ALFIN1 --------->GLK1(1)   <---------TOE1(3)              --------->ATHB12 --->AtSPL3=======================HOX2a_HOX2a      <-----------GT1        <---------YAB1        <---- ------->MYB46(3)  ===============HOX2a_HOX2a      --------->YAB1        <-----------TGA1       <---- ---------ALFIN1  --------->TOE2(3)         <---------TOE2(3)           --------->YAB1--------->ATHB12   caccaccaccctcctcgtttcctcagagatcccctctctaacttctaaggtaatcacatttccataacgttccatcgtcattgattcttcattagtatgc  3858000                                  <---------AGP1                                  <---------ARR11(3)                                  --------->ARR11(3)                                  --------->ARR14(2)                                  <---------ARR14(2)                                 <---------CCA1(2)      --------->AtLEC2      <---------YAB1                  <---------AHL20(2)    <---------YAB1<---------ANAC46      <---------ICU4                  --------->AHL20(2)==================HOX2a_HOX2a           --------->YAB1        <---------DAG2         <--------P      ------>ZmHOX2a(1)           <---------ATHB12        <----------DOF2   <----------DOF2 <---------GLK1(2)     ---------->DOF2     ------->TEIL<---------AHL20(2) ------>ZmHOX2a(2) <---------ANAC58     <---------ATHB51         < -----ANAC58     --------->AHL20(2)<------ZmHOX2a(2)  <---------ANAC58 <-------TEIL  --------->AHL20(1) -----ANAC58     <---------AHL20(1)===================HOX2a_HOX2a   ----------->GT1  <---------AHL20(1)   gtttatgaagctttttcaatttaattctctttggtagatcttaagattcctctgtttcttgcaaaataaagggttcaattatgctaatattttttatatc  3858100                                                                                           ----------                                                                                         <---------AtLEC2                                                                                         --------->ANAC55(2)                                                                                     <----------DOF2                                                                            <---------TOE1(3)                                                                            <---------TOE2(3)   <----                        --------->At4g35610                                 <---------------AtSPL3          --------->CCA1(2)                                                 <---------------AtSPL8         --------->ARR14(2)                                                 --------------->AtSPL8         <---------ARR11(3)                                       --------->LBD16   <---------ICU4         --------->ARR11(3)       <---------ARR11(3)            <---------LBD16   <---------ARR11(3)         <---------ARR14(2)       --------->ARR11(3) ----------->HVH21      --------------->AtSPL3        <------ZmHOX2a(1)  ----------->GT1     =================================================bZIP_DOF   >>>>>>>>>WRKY18      <---------At4g35610    <---------TGA1a--------->ARR14(2) --------->REM1(1) ---------ICU4        <-----------RAV1(2)      --------->TGA1a<---------ARR14(2)<-------TEIL <-------   aattttgacaggatatagaaaatggcagatggtgaagacattcagcctctcgtctgtgacaatggaaccggaatggttaaggtacatctttacatgacct  3858200                                <---------AHL20(2)                                <---------AHL20(1)                                                  <                              <---------YAB1                                                        <      <---------AHL20(2)   --------->AHL20(2)                                                   <----    --------->CCA1(2)    <----------DOF2                                                       <----- ->HVH21           <---------DAG2<---------YAB1                    --------->YAB1              ------ ------DOF2        <----------DOF2                            <-------TEIL            ------>ZmHOX2a(1) --ARR11(3) <---------YAB1 <---------AHL20(2)      <---------MYB52(1)                --------->TOE2(3)   ttgtggatataaatctgataactttttcttttattatttttggatacaatgctgttttgtctggttcattcatatgtgtttccaattccttaggctggat  3858300  Previous    Next  AGI:  At3g12100.1    Description:  cation efflux family protein / metal tolerance protein, putative. Identical to Metal tolerance protein C2 (MTPC2) [Arabidopsis Thaliana] (GB:Q6ICY4;GB:Q9C7C2;GB:Q9LH56); similar to cation efflux family protein [Arabidopsis thaliana] (TAIR:AT2G04620.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23401.1); contains InterPro domain Cation efflux protein; (InterPro:IPR002524) Range:  from: 3854521    to: 3857325    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g12110.1    Description:  ACT11 (ACTIN-11); structural constituent of cytoskeleton. Identical to Actin-11 (ACT11) [Arabidopsis Thaliana] (GB:P53496); similar to ACT3 (ACTIN 3), structural constituent of cytoskeleton [Arabidopsis thaliana] (TAIR:AT3G53750.1); similar to ACT1 (ACTIN 1), structural constituent of cytoskeleton [Arabidopsis thaliana] (TAIR:AT2G37620.1); similar to ACT1 (ACTIN 1), structural constituent of cytoskeleton [Arabidopsis thaliana] (TAIR:AT2G37620.2); similar to hypothetical protein [Vitis vinifera] (GB:CAN83697.1); similar to Actin-97 (GB:P30171); similar to actin 2 [Torenia fournieri] (GB:ABG49392.1); contains InterPro domain Actin/actin-like; ( Range:  from: 3857849    to: 3859804    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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