Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                               ------>ZmHOX2a(2)                   --------->ANAC58                                                         <------ZmHOX2a(2)                   --------->ANAC46                                                        --------->ARR14(2)           ------->GAMYB                                                                   <---------ARR14(2)          --------->MYB46(3)                                                             --------->LBD16     <---------HSFB2a(2)                                                                --------->ANAC46     --------->HSFB2a(2)                     ---------->DOF2 --------->GLK1(1)         <---------LBD16 ----------DOF2    --------->ANAC58          --------->AHL20(2)    ---------->DOF2--------->YAB1 -------GT1--------->TOE2(3)        <---------CCA1(2)  ---------->DOF2      <---------ARR11(3) --GLK1(2)<----------ID1 --------->DAG2--------->TOE2(3)   ----------->GT1  --------->ARR11(3)   tccttttctataaccacaaacacccaaaaattgaaatcaaatctcaataaaacacataaaagggtatctaaaagtcgaaatctttcatacccggatcgca  3510200                                                              ---------->DOF2                                                          --------->ARR14(2)                      ----------->GT1                     --------->GLK1(2)        ----------->GT1                     <---------HSFB2a(2)                  ------->TEIL             --------->LBD16                  --------->ARR11(3)                      <---------ARR14(2)     --------->TOE1(2)           --------->YAB1                            <------ZmHOX2a(1)         --------->GLK1(2)       --------->ICU4--------->HSFB2a(2)            <----------ID1            --------->GLK1(1)  ----------->GT1 <---------ARR11(3)             ---------->DOF2              <---------GLK1(1) -----   ttgagagtaaaaatcatcaacatctggaaaaaatcacaaaaacgaacaagttaaaggacgaatccaaaggcattacgaagaaatctgggaaatttagaga  3510300                                                                            =========================                                                                            ------>ZmHOX2a(2)                                                                           --------->GLK1(1)                                                                           <------ZmHOX2a(2)                                                                           ==========================                                                                          <---------AGP1                                                                          --------->ARR11(3)                                                                          <---------ARR14(2)                                                                          <-----------ARR10                                                                          --------->ARR14(2)                                                              <---------KAN4(1)                                                  --------->ANAC58        --------->ARR14(3)                           <---------ZAT6         --------->ANAC58        <---------ARR14(3)                      <----------DOF2            --------->SPL7 --------->GLK1(2)        <---------ANAC58                   <---------ARR11(3)       --------->At4g35610--------->YAB1            <---------ANAC58                   --------->ARR11(3)    ---------->DOF2      --------->KAN4(1)        --------->ALFIN1             --------->ARR14(2)    --------->ANAC58       ----------->GT1 <---------ARR11(3)             <---------ARR14(2)    --------->ANAC58     --------->At4g35610<---------GLK1(1)  <------ ----->DOF2 <------ZmHOX2a(1)   --------->ZAT18<------NtERF2 <---------KAN4(2)       ------->GAMYB   aagagagagagagaggatttagacctttagtgagagcacgaagaagagcggcacgacgagcggaataatctttgaagatctcttcaacggtgcgagggtt  3510400                ------>NtERF2                <------NtERF2               ------>NtERF2               --------->RAP2.6(2)              <---------RAP2.6(2)              --------->ATERF1(2)              --------->DEAR3(1)              <---------ATERF1(2)              <---------DEAR3(1)              <---------ANAC46             <------NtERF2             --------->DREB2C(1)             ------>NtERF2             --------->ATERF1(1)             <---------DREB2C(1)             <---------At4g35610             --------->At4g35610            <---------RAP2.6(1)            <---------RRTF1(1)            <---------ATERF1(1)            <---------RAP2.3(1)            ------>NtERF2           <---------DEAR3(1)           <---------RAP2.3(2)           <---------RRTF1(2)          --------->ATERF1(1)          <------NtERF2          <---------LBD16          <---------At4g35610          --------->At4g35610          <---------ABI4(1)        <---------YAB1         <---------ERF1--------->ZAT6         <---------ATERF1(1)      --------->AHL20(2)         <---------RAP2.3(1)    <---------RVE1(1)        <---------DEAR3(1)     <---------ARR11(3)       --------->At4g35610     <---------GLK1(2)   --------->MYB52(1)--------->ARR11(3)  <---------ARR14(2) <---------ARR11(1)  --------->ARR14(2) <---------ARR11(3) <------ZmHOX2a(1)   --------->ARR14(2)                            --------->ANAC58 =======HOX2a_HOX2a  <---------ARR14(2)   <---------ARR11(3)       --------->ANAC58 =======HOX2a_HOX2a <---------CCA1(2)     --------->ARR11(3)  ----------->HVH21 -GAMYB----------->RAV1(2)     --------->ARR11(3)  <------ZmHOX2a(2)    ------>ZmHOX2a(2)   agaggaaacggctgcggcggccatatctctacagatttttataagatttatagatcagtactagttgacaaggatcgatgtctgtatcaatggtttttga  3510500                                                                            <------ZmHOX2a(1)                                                                --------->ANAC46                                              <------ZmHOX2a(1) --------->ANAC58         --------->SPL7               --------->CCA1(2)         --------->ANAC55(1)      <---------ANAC58               --------->ARR11(3)         --------->ANAC58      <---------ANAC58               <---------ARR14(2)       --------->MYB52(1)   >>>>>>>>>>GT-3b --     <-------TEIL                    --------->ARR11(1)    --------->At4g35610  ----------->GT1  ----   gacccgatgcgttcgggcatgaagagagagagaacaatagatatggaaggagatggagagaagcagacggaacaagaaggagaagaaaaataagagagag  3510600                                             <------NtERF2                                             --------->At4g35610                                             <---------At4g35610                                           <---------WRKY12                                          --------->TGA2(2)                                         <-----------HVH21                                         <-----------TGA1                                        <---------ANAC58                                        <---------ANAC58 <------MYB46(1)                                    <---------ANAC58     <------MYB83                                   <---------MYB46(3)   <---------AtMYB61                                   <------MYB83         --------->MYB111(2)                      <---------YAB1<-------GAMYB       --------->MYB46(2)           --------->MYB59                    <---------AHL20(2)  <---------ANAC46<---------MYB46(3)           <---------TOE1(3)                   <---------YAB1  <------MYB46(1)      --------->MYB59         <---------DAG2                  <---------AHL20(2)<---------ANAC58    --------->MYB111(1)     <----------DOF2     --------->AHL20(2)           --------->MYB59---------->DOF2          <---------ANAC58 --------->GT1  <---------YAB1    <---------AtMYB61--------->DAG2         <---------ANAC58 ------->GT1<----------DOF2      *TSS   <---------bZIP60(1)              <-------TEIL<---------TOE2(3)   agagaaaataaaaactttatttttatttttgggagtttggttgcgtcagcgaaaaggtttggtagtagacgaagatgcgtcgctttttaggtaaatggca  3510700                     <------MYB46(1)                     <------MYB83                                                      <----------DOF2                    --------->MYB59                                                 <-----------GT1                <---------ZAT6                            <---------DAG2 ----------------->AGL2     -           <---------MYB52(1)                             <----------DOF2<-----------------AGL3     -       <---------ZAT18                            ------>ZmHOX2a(1)      ----------------->AGL3  <---   ttttagttgggcccttaagtgttaggttttaggcccaaataagtccaatctcctaagcgacttttttgttatcggcccaaatttagttactttgtgattt  3510800                                    --------->ANAC55(2)                                    <---------ANAC55(2)                                          <---          --------->ANAC46     <---------ZAT6                                          ---------->DOF2        --------->ZAT6       <---------ANAC46                                    ----------->GT1 <--- -------->TOE2(3)           <------ZmHOX2a(1)                                    --------->ANAC58<--- -------->TOE1(3)      <---------HSFB2a(2)                               ----------->GT1       <----- --------GT1           --------->HSFB2a(2)                        ----------->GT1--------->ANAC58<---   taccttcaaaacactaaacccctgtctggaggagtgttatgtgatgagtttcagacatttgttaatgtctgtaaaatgtaaacaagaaaaaaagaaatta  3510900                                                              <---------DOF5.7(2) ------ANAC46                             ----------->GT1  --------->YAB1             --------->YAB1 ------ANAC58 <---------ANAC46    --------->CCA1(2)        ----------->GT1    <---------ARR14(2) ------ANAC58 <---------ANAC58 <---------TOE2(3)   --------->TOE1(3)          --------->ARR14(2) ----AHL20(2) <---------ANAC58 <---------TOE1(3)   <----------DOF2     <---------ANAC58 ------ANAC55(2)--------->ALFIN1 --------->ARR11(3)--------->TOE2(3)   <---------ANAC58  <---------GLK1(2)   cttgaacacaaacttggtgtgtttctgtgatttaagatttagataagtataaactttaaaatggtaacgtttttcgagcgaaactgaatcagattatagc  3511000                                 <----------DOF2                  --------->CCA1(2)                                 <---------DAG2                  --------->ARR14(2)                         --------->ANAC58                      <---------YAB1                       -                         --------->ANAC58                 <---------ANAC55(2)                <-------GAMYB                       ---------->DOF2                    <---------ANAC46              <---------ANAC58                     >>>>>>>>>RAP2.2              --------->At5g28300 --------->ARR11(3)<---------ANAC58           ----------->GT1  ---------->DOF2      ----------->GT1 <---------ARR14(2)     <---------ANAC46   agagacacttgtaatgtaaacaatctaaagcaaagctttatcacattaagacagtgaattatgtgaagatagggtcttgttgttgttgttgtgtgtgttg  3511100  Previous    Next  AGI:  At3g11200.1    Description:  PHD finger family protein. similar to PHD finger family protein [Arabidopsis thaliana] (TAIR:AT5G05610.2); similar to PHD finger family protein [Arabidopsis thaliana] (TAIR:AT5G05610.1); similar to unknown [Populus trichocarpa] (GB:ABK92965.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011) Range:  from: 3508049    to: 3510633    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g11210.1    Description:  GDSL-motif lipase/hydrolase family protein. similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT2G38180.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41352.1); contains InterPro domain Esterase, SGNH hydrolase-type, subgroup; (InterPro:IPR013831); contains InterPro domain Lipase, GDSL; (InterPro:IPR001087); contains InterPro domain Esterase, SGNH hydrolase-type (InterPro:IPR013830) Range:  from: 3510669    to: 3513066    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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