Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                          <------MYB46(1)                                                                                        --------->ANAC55(2)                                                                                        <------MYB83                                                                                        <---------ANAC55(2)                                                                                --------->ANAC55(2)                                                                                ----------->GT1                                           --------->ANAC46                    <---------TOE1(2)<----                                       --------->bZIP60(1)                     <---------TOE2(2)-----                                       <---------GLK1(1)                   <---------YAB1      <----- --------->TOE2(3)              <---------ZAT14                      --------->YAB1    --------->MYB59 ----AHL20(2)                   --------->ZAT14                     <---------ATHB12   <---------TOE2(3) --->AHL20(2)       <---------TOE2(3)  <---------bZIP60(1)      ------>ZmHOX2a(2)    --------->ICU4 ---DOF2           --------->YAB1      --------->GLK1(1)  <---------MYB52(1)--------->YAB1   --------   atttcttaacacattacacattgatgatgccaattgcagtgatatcagcaacttgcaaccgtttgatccaatgatatatcataggtaattaggtatcata  2425800                         <---------AHL20(1)                         --------->AHL20(1)                        --------->YAB1                                                              -                    <---------AHL20(2)                                                             <-                    --------->AHL20(2)                                                             <-          --------->MYB52(1)                                           --------->ARR11(3)          -- -----ARR11(3)  <--------P<---------AHL20(2)       --------->YAB1      <---------ARR11(3)          -- ---->ARR11(3)----------->GT1 --------->TOE2(3) --------->YAB1      <-----------GT1               --- ----CCA1(2) ----------->GT1  --------->YAB1--------->AHL20(2)     <-----------GT1  --------->GLK1(2) ->YAB1 --------->CCA1(2)--------->AHL20(2)--------->AHL20(2) <---------TOE2(3)  ------------>CBF <--   tctcatggagataaacgggtaaataaatataatcttatttgctaaataaaaaataatcaagtttaagttttaacatcttcatatacaatctggtttctgt  2425900                                                                                                 ----    <---------------AGL15                                                           >>>>>>>>>>WRKY43    --------------->AGL15                                                           >>>>>>>>>>WRKY38 ----->ZmHOX2a(2)                                                                   >>>>>>>>>>WRKY26 --------At4g35610                                                                 --------->WRKY38(1) --------GLK1(1)                   ---------->DOF2              ----------->GT1    ----------->HVH21 ------->GLK1(1)               --------->AHL20(2)       ---------->DOF2          --------->CCA1(2) ------->At4g35610             <---------AHL20(2)  ---------->DOF2   --------->AHL20(2)  ----------->GT1 ------>ARR11(3)           --------->ATHB12   ---------->DOF2   <<<<<<<<<<E2Fb  --------->ARR11(1) -------ARR11(3)          <---------YAB1--------->GLK1(2)      ----------->GT1  <---------ARR11(3)   gatctccctgtattagcaaaaaaaaaacatgatttaaaaaagaatttggaaagaaaagaaaagagcgggaaataaatccaaagatttgaccaagttaaac  2426000                                                                       --------->REM1(2)            <                                                                     --------->LBD16            <----                                                                    <---------ANAC58           <-----                                                           --------->TOE2(3)                  -------                                                --------->AHL20(2)  <---------ANAC58       <---------ZAT2                                               --------->AHL20(2)   <---------ANAC46       <---------At4g35610        <-----------GT1                    --------->AHL20(2)       <---------ANAC55(2)    --------->At4g35610   <---------DAG2                          <---------AHL20(2)       --------->ANAC55(2)<---------ANAC58   <----------DOF2                         --------->AHL20(1) ---------->DOF2          <---------ANAC58 ----->AtMYB61                      --------->LBD16        --------->TOE1(3)        <----------DOF2 <   caaaacttttttactatctgagaaaaccattcagtttccccaaaataaaataaaaaatcagccttaaatcccgtgtctagggttttctttcgtagctgat  2426100     <------NtERF2  --------->At4g35610  <---------At4g35610  --------->ATERF1(1)                                            <------ZmHOX2a(1) <---------ATERF1(1)                                        --------->ALFIN1 ------>NtERF2            <------------CBF                <---------ANAC46 ---------RAP2.3(3)      --------->ATHB12                 <-----------RAV1(1)      <-------GAMYB -----WOX13(1)          <---------YAB1                 --------->GLK1(2)         <---------TOE2(3) -------CBF           <------ZmHOX2a(1)               <---------GLK1(2)          <---------TOE1(3)--- -->ATHB12        --------->DEAR3(1) <---------YAB1   --------->ARR14(2)    <---------MYB46(3)    <-- ---------RAP2.6(2)------>NtERF2 --------->GLK1(2)    <---------ARR14(2) --------->ALFIN1      ------   tgggggctgcaagagtttcgccgaggacgattgagaattttgattttcgaaaaatggattctgtggaggaagaaggtgttgttagggttgaagaagagaa  2426200                                                                  ----------->HVH21                                                                  ----------->TGA1                                                               ------>NtERF2                                                            ------>ZmHOX2a(1)                                                           --------->TOE1(2)                                                         ====================================HOX2a_HOX2a                                                         <------ZmHOX2a(2)                                                        <---------ARR11(3)                                                        --------->ARR14(2)                                                        --------->ARR11(3)                                                   <---------ANAC55(2)                                       <---------ZAT2   <---------GLK1(2)       <---------MYB46(3)              --------->ZAT2 ----------->ARR10       --------->ABI4(2)               <---------At4g35610------>ZmHOX2a(2)      <---------AtMYB61                --------->At4g35610===================================HOX2a_HOX2a      --------->ALFIN1     ----------->GT1         <---------ANAC58   --------->ALFIN1  --------->At4g35610           <---------ANAC58  <---------ETT(2)   <---------DEAR3(1)<---------At4g35610   <------NtERF2<---------ARR14(2)                      ----- -------->HVH21      <------NtERF2    --------->GLK1(2)--------->GLK1(1)                    --------- -------SPL7  --------->LBD16         ------->TEIL <---------ANAC46--------->MYB52(1)       --------- --->MYB52(1) <---------SPL7       --------->ANAC46--------->ANAC55(2)                <------ZmHOX2a(1)   cggacgcggtggtctccgtaggcatcggagggtttctacgaagctggcgaattacgtagatcctccgactgacgacgaagaagatggaggacccaagcga  2426300                                                                 --------->ANAC58                                                                 --------->ANAC58                                                               --------->MYB52(1)      --------->DAG2                                    <-------TEIL     --------->DAG2                 --------->ANAC58 --------->GLK1(1)    ---------->DOF2                 --------->ANAC58 --------->At4g35610 ----->DOF2             <------NtERF2--------->DEAR3(1)--------->AtLEC2                <-----------HVH21 >ANAC58   --------->ALFIN1  ---------->DOF2       <------ZmHOX2a(1)             --------->MYB52(1) < >ANAC58 <---------ANAC46 --------->LBD16 ---------->DOF2  ---------->DOF2<---------REM1(1)       ---   aagggcaaaaggggtggaaatagggctccgaaaaagacaccgaagaaagacgaggagatgcaaaagaacgaaattgatgaagcaaaccgagtcactggtc  2426400                           --------->GLK1(2)                          <---------HSFC1(1)                          <---------GLK1(2)                           --------->HSFC1(1)                          --------->ARR11(3)     <---------ICU4       <---------HSFB2a(2)                --------->RAP2.6(2)              --------->ATHB51     --------->HSFB2a(2)                --------->DEAR3(1)               --------->ATHB12  --------->GLK1(2)         ---------->DOF2<---------TOE2(3)        -------->ATHB1  --------->HSFB2a(1)               --    ----------->GT1     ----------->ARR10       --------->ICU4   --------->HSFC1(2)        ----------   ----------->GT1 ------>NtERF2                <---------YAB1   <---------HSFB2a(1)--------->ANAC46 ---------REM1(1)------>NtERF2<---------YAB1 ------------>ATHB5  <---------HSFC1(2) --------->ANAC58 ------>At4g35610--------->LBD16      ---------->DOF2       <------ZmHOX2a(1)       --------->ANAC58   tggtgaaggaaaaaagagccgcgactaagattctgaatcgcaaagactccattattgaagtaggagaagcttctggaagcatgcccaaggaagtaaaggg  2426500                                                           --------->ANAC58                                                           --------->ANAC58            -------->ATHB1            --------->DAG2                                 <----------ID1              --------->ATHB12    <---------ARR14(2)                                  --------->ANAC58               <---------ICU4   <------ZmHOX2a(1)                               --------->LBD16    <---------ZAT14 <---------YAB1  <---------YAB1        --------->GLK1(1)   <---------MYB52(2) ---------->DOF2   --------->LBD16   -- ------->ICU4      ----------->GT1    --------->GLK1(2) --------->ANAC58   --------->ZAT14 <---------MYB46(3) >DOF2     ---------->DOF2     <---------MYB46(3)<---------LBD16      --------->ZAT14--------->GLK1(2)   aattaggattgggaaaaggaagggagaaatcgatggtgagattccaactaagccgggcaagaagccaaagactacagtagacccgagaatcattggttac  2426600                                                                <---------AHL20(2)                                                               --------->AHL20(2)                                              --------->ANAC55(2)                                          <---------MYB59      <---------AHL20(2)      --------->MYB52(2)                  --------->TOE2(3)  --------->TOE2(3)        <------ZmHOX2a(1)    <---------MYB52(1)                 <---------CCA1(2)   --------->AHL20(2)   <---------AHL20(2)    <--------P                   <----------DOF2       --------->AtMYB61       --------->AHL20(2)   <---------MYB52(1)       <-----------GT1   <---------ANAC55(2)          --------->ARR11(3)   <-----------HVH21     <---------------AtSPL8   --------->RAP2.6(3)      <---------ARR11(3) ------->MYB52(1)        --------------->AtSPL8 ----------->HVH21          --------->AHL20(1)   agaccggttagtgatttctctgtaaaatttgtactcttttcataccttacatgacgaccaattcattaattttgggatatattatataggacaatatgtg  2426700  Previous    Next  AGI:  At3g07610.1    Description:  IBM1 (INCREASE IN BONSAI METHYLATION 1); histone demethylase(H3-K9 specific) / transcription factor. similar to transcription factor [Arabidopsis thaliana] (TAIR:AT1G11950.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44407.1); contains InterPro domain Transcription factor jumonji (InterPro:IPR013129); contains InterPro domain Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347) Range:  from: 2426154    to: 2432882    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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