Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                              <---------At4g35610                            --------->At4g35610                           --------->DEAR3(1)                          --------->RAP2.3(1)                          --------->ATERF1(1)                          --------->DEAR4(2)                          <------NtERF2                         <---------RAP2.3(1)                         --------->ABI4(1)                         <---------ATERF1(1)                         ------>NtERF2                        --------->ANAC46                        --------->ATERF1(2)                        --------->DEAR3(1)                        <---------DEAR3(1)                        --------->RAP2.6(2)                        --------->RAP2.3(2)                        --------->RRTF1(3)                        --------->RRTF1(2)                        --------->RAP2.3(3)                        <---------ATERF1(2)                        <---------ALFIN1                       --------->ORA47(2)                       --------->RAP2.3(1)                       --------->ERF1                       --------->RAP2.6(1)                       --------->RRTF1(1)                       --------->DEAR4(2)                       <------NtERF2                      --------->At4g35610                      <---------At4g35610                      <---------DEAR4(2)                      --------->ABI4(1)                      <---------ATERF1(1)                      <---------RAP2.3(1)                      ------>NtERF2                     --------->RRTF1(3)                     --------->ATERF1(2)                     <---------ATERF1(2)                     --------->RAP2.6(2)                     --------->RAP2.3(2)                     --------->RRTF1(2)                     --------->RAP2.3(3)                     --------->DEAR3(1)                     <---------DEAR3(1)                     <---------ALFIN1                     --------->ANAC46         --------->O2                    --------->ATERF1(1)       <---------O2                    --------->RAP2.6(1)     <---------ALFIN1                    --------->RAP2.3(1)     ----------->RAV1(1)                    --------->ERF1       ===============MYC_MYB                    --------->DEAR4(2)   --------->RAP2.6(2)                    --------->RRTF1(1)   ------->GAMYB                    --------->ORA47(2)  --------->DEAR3(2)                   <---------ATERF1(1)  <---------MYB55(2)                   --------->ABI4(1)    <------------AtMYB77                   <---------At4g35610  ================MYC_MYB                   ------>NtERF2        --------->MYB46(3)                   --------->At4g35610--------->ARR14(2)                  <---------ALFIN1    --------->MYB52(1)                  --------->DEAR3(1)  <---------ARR14(2)                  --------->ANAC46 --------->TOE1(3)      <---------ALFIN1<---------DREB2C(1)--------->DEAR3(1)      --------->ANAC58   <---------ALFIN1--------->LBD16 =====================MYC_MYB  --------->ANAC55(2) ------GLK1(2) <---------ALFIN1    --------->TOE2(3)             --------->ANAC55(1) ----->ARR10   --------->AtMYB61<---------ALFIN1     --------->At4g35610               <---------At4g35610 -->SPL7       --------->DEAR3(1)  ------->GAMYB     <---------At4g35610    --------->YAB1        <-- -SPL7--------->AtMYB61--------->ATERF1(1)<-----------HVH21      --------->ANAC46      --------->At4g35610 -ARR14(2)  <---------ALFIN1------>NtERF2--------->ANAC46        <---------ANAC55(2)<---------At5g28300 >ARR14(2)------>ZmHOX2a(1)--------->RAP2.3(2)--------->TGA1a    --------->ANAC58  <-----------GT1<--   attctccacctcctccacctccgccgccgccgctcaaccctaaccgccacatcggagctacaaaaacacgcatttgaatcagaattcacagctctaatcg  1949400                                                                                                   --                                                                                                 ----                                                       <-----------GT1                       ------>ZmHOX2a(2)                      --------->TOE2(3)             --------->ARR14(2)                  ------>ZmHOX2a(2)         --------->LBD16                            <---------ARR14(2)                 <------ZmHOX2a(2)        --------->LBD16                           <---------MYB46(3)                  --------->ARR14(2)        ----------->GT1                         <---------At4g35610                   ------->TEIL --   --------->KAN4(2)  --------->TOE1(3)    ----------->HVH21           <-------TEIL   <---------ARR14(2) -------TOE1(2)       <----------DOF2   --------->TOE2(2) <---------ALFIN1--------->AtLEC2  <------ZmHOX2a(2) -------TOE2(2) --------->YAB1          --------->TOE1(2)--------->MYB46(3)      --------->CCA1(2) <-   cagattaatcccgaaaaatcaaaactttaacaagagacattaccttcgacagcggtttcaccaccatgagaggtccattcaagagatggatccgatcgcg  1949500                     --------->SPL7               ------------------>SPL14               ------>NtERF2              --------->ATERF1(1)              --------->ETT(2)              <---------RAP2.6(2)              ----------->HVH21             --------->ATERF1(1)             ------>NtERF2            <---------ATERF1(1)        <---------LBD16                                                            ---------->DOF2 ------->HSFB2a(1) <---------SPL1(2)                                           ---------->DOF2 -->NtERF2--------->LBD16                        --------->ZAT14    <---------------AGL15       <---- ------->HSFC1(2)  <---------SPL7 <---------WOX13(1)     <----------ID1---------->DOF2      <-------- --------HSFC1(2)--------------->AtSPL3          <---------ZAT14    --------------->AGL15 xxxxxxxxxxx   acccttcttcaccggggcgaccgtaccgctccattgatagaccctaatctctacagagggagacaaatccctcaaaagagcaaaagaaagaagtcttttt  1949600                                                                                ---------->DOF2                                                                           ----------->GT1                                                                  <---------ARR14(2)                                                                  --------->GLK1(2)     <------ZmHOX2a(2)                                                       <---------YAB1      <----------ID1   <--------                                                     <---------ANAC46   ---------->DOF2<---------ARR14(2)                                                   --------->ZAT14--------->ARR14(2)   <---------ARR11(3)                    --------->ETT(1)     ---------->DOF2          <---------ARR11(3)   --------->ARR11(3) --------------------ANAC81     <---------GLK1(1) --------->ALFIN1--------->ARR11(3)   --------->ARR14(2) --DOF2       <----------DOF2   <---------At4g35610<---------ZAT14------------------------>ANAC81 xxxxx>smallRNA(i) ---------->ID1      <------ZmHOX2a(2)   ----------->GT1----------->GT1------>ZmHOX2a(2)   tttttttttttttgagcttttgtcggaatgttagagctccgatcaaagaagagtgttgtgattgtgaaaatctgaaaaggaaaaaagaagatcgtagttt  1949700                                                                                                 ----                                                                                                <----                                                                                               *TSS                                                                                               <-----                                                                                               <-----                                                                                            <--------                                                                                            <--------                                                                                            ---------                                                                                          <---------AHL20(2)                                                                                          --------->AHL20(1)                                                                                          <---------AHL20(1)                                                                                       --------->AHL20(2)                                                                                       --------->AHL20(1)                       <---------ANAC58                                                <---------AHL20(2)        <---------ALFIN1<----------DOF2                          <---------DAG2     --------->YAB1 <-        --------->AtMYB61  <---------ARR11(3)           <---------At4g35610       --------->AHL20(2)     --------->ANAC46  <---------ANAC46                 --------->At4g35610      --------->YAB1------  --------->REM1(1)    <---------ANAC58              ---------->DOF2          --------->YAB1--------- -TOE1(2)     --------->ZAT6 ------>ZmHOX2a(2) ------>NtERF2     <----------DOF2--------->AHL20(2) <-   cgcttcaacaccactctcactagtcgcttgatctctctctctctctctctgccttcaaagctgaaaacttttttgaactaaaataaaaataaaatatttt  1949800      <---------RAP2.6(2) ----->YAB1 -----YAB1                         ----------->GT1 ------TBP                        --------->LBD16                        --------->ALFIN1 ----AHL20(2)                    --------->LBD16               <----------DOF2 -AHL20(1)                <---------ICU4                       <---------DAG2 -ARR11(3)               <---------YAB1                       <---------ANAC58 >ARR11(3)               <---------AHL20(2)                   <---------ANAC58                  <---- --------YAB1          --------->YAB1                     <------------CBF  <---------ANAC46<-------- --->AHL20(2)        <-----------TBP            <---------ANAC58         ----------->HVH21 ------>ZmHOX2a(2) >AHL20(1)         <---------AHL20(2)           <---------ANAC46   --------->HSFB2a(2)   <---------ARR11(3) --------AHL20(2) <---------YAB1<---------LBD16 <---------ANAC58   <---------HSFB2a(2)   --------->ARR11(3)   tataattttcggctacgatttttatttataatttccctggtaacaagtttgtgtgtgtgttattgctttttggaagtgatggggaagttttgatctttct  1949900                                              <-----------GT1                                              --------->CCA1(2)                                             <---------ARR14(2)                                         >>>>>>>>>GT-1                                       <-------GAMYB                                   --------->MYB55(2)                                   <---------MYB46(3)                                --------->LBD16 --------->ANAC46                     <---------ANAC58 ----------->GT1                     <---------ANAC58<---------AtMYB61                 <---------ANAC46 <---------DEAR3(1)                 <---------ANAC58 <---------AtMYB61 >>>>>>>>>E2Fd                 <---------ANAC58 --------->ALFIN1  <------NtERF2            <----------DOF2    --------->ATERF1(2)  >>>>>>>>>E2Fc            <---------DAG2     <---------ATERF1(2)--------->ANAC58          <------NtERF2        <---------DEAR3(1) --------->ANAC58    --------->ALFIN1<---------TOE1(2)<---------ANAC46  <---------ANAC58  <---------DEAR3(1)--------->MYB55(2)  <---------ANAC46  <---------MYB46(3)<---------MYB46(3) --------->YAB1              ------>ZmHOX2a(1)  <---------ANAC58<---------LBD16<---------MYB52(1)------>NtERF2                ------>ZmHOX2a(1) ------DOF2<---------DAG2      <---------DREB2C(2)--------->ANAC46     <---------ZAT18             <- --DOF2--------->ATERF1(1)    <---------LBD16--------->ARR14(2)       ----------->HVH21           <--   ttatgcgtggtcgcctttttcgtgggtgttttgccggtggtggttaatatacgcgccaaacatagacaattagtgacctctcctctcctctctctcttct  1950000                                                                         --------->YAB1                                                                         ----------->GT1                                                                        <---------YAB1                                                                        ----------->GT1                                                                  <---------TOE2(3)                                                           <---------AHL20(2)             <---------RVE1(1)              <---------ANAC58                            <---------AHL20(2)              <---------CCA1(1)        --------->AHL20(2)                                --------->ARR11(3)             --------->ARR11(3)        <---------AHL20(1)                                --------->AHL20(2)             <---------ARR11(3)        <---------AHL20(2)                                <---------AHL20(1)           ----------->ARR10    <---------AHL20(2)                       --------->AHL20(2)<---------AHL20(2)   <---------ANAC46   <---------AHL20(2) <-----------GT1     <----------DOF2 --------->AHL20(1)       <---------TOE2(3)< -----------------------ANAC81         ---------->ID1     <---------ARR11(3)--------->AHL20(2)      < --------DOF2 <---------ANAC58      <----------DOF2      --------->AHL20(2) <---------AHL20(2)  <----   ctttttttattttatttcttgttttttcttctctatttcttttccttttaaataccaaaatatattttaagaaaatgataaattttacgtagatattttt  1950100                                                                                              -------                                                                                             <-------                                                                                             <-------                                                                                             --------                                                                                             --------                                                                                             ========                                                                                            ------>NtERF2               --------->ARR14(2)                                                        --------->At4g35610           --------->YAB1                                <---------AHL20(1)        --------->YAB1----      --------->AHL20(2)      --------->AHL20(2)         --------->AHL20(2)       <---------ATHB12      <---------AHL20(2)      --------->YAB1             --------->AHL20(1)     --------->WOX13(1)  - ------MYB46(1)<---------ARR14(2)              --------->MYB59                 --------->MYB46(3)<--- ------MYB83  <---------GLK1(2)             --------->GLK1(2)             <-----------GT1<---------At4g35610 -------RAV1(1)--------->GLK1(2) ---------->DOF2----------->GT1  ---------->DOF2--------->YAB1<------   gttggtatataaataagaatctgaaatacaaattataaagcttgaaaatcaggtagaaatattttagaaaagcttattacaacaatcactaggctgccat  1950200           ------->TEIL       --------------->AtSPL8      <---------ANAC46 <------MYB83<----------DOF2 <------MYB46(1) -------->AGL15 ----------AGL3 ----------AGL2                                                                                 <---- --------->AGL3                 --------->AHL20(2)   <---------------AtSPL8           <---------ICU4 --------->AGL1     --------->ATHB12                 --------------->AtSPL8           --------->ATHB12 ======================================================MADS_MADS                     --------->ICU4 ----->ARR14(2)     -------->ATHB1                --------->AHL20(2)                 <---------YAB1 -------->MYB111(1) <---------ICU4                <---------AHL20(2)    ---------->DOF2       <------ ------ARR14(2)    <---------ATHB12    <---------------AGL15           <------ZmHOX2a(1)<---------YAB1 ---------AGL15--------->AHL20(2)      --------------->AGL15 <-------TEIL      <---------ANAC46<-----   atttggtggtatgtactttaaatcattgagtctataaatttctattttttgtttaattgtacattcatgtataggaaagggacgttgattattagactgt  1950300  Previous    Next  AGI:  At3g06410.1    Description:  nucleic acid binding. Identical to Zinc finger CCCH domain-containing protein ZFN-like 2 [Arabidopsis Thaliana] (GB:Q9SQU4;GB:Q0WKX1); similar to nucleic acid binding [Arabidopsis thaliana] (TAIR:AT5G18550.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71001.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571) Range:  from: 1947246    to: 1949795    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version