Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                         <------ZmHOX2a(1)                 ------------           --------->MYB52(1)                       --------->YAB1                      <---------DEAR3(1)        --------->YAB1                      <---------ANAC58                          ------>NtERF2       <---------ATHB12                     <---------ANAC58                          --------->MYB52(1)  --------->ANAC58                       <---------GLK1(2)                           ----------->HVH21  --------->ANAC58                       <---------ARR14(2)                          --------->DEAR3(1) --------->DOF2                          --------->ARR14(2)                       ------->GAMYB ------STY1(2)                          <------ZmHOX2a(1)                        --------->MYB46(3) ----->At4g35610                    ------>ZmHOX2a(1) <---------YAB1        --------->YAB1--------->At5g28300   gctaaagcaatgaaaacggagacataagccgaattatcctcaggattcttgccatcaggatagaaatagatagcccattgataacccccgacggtgaaag  939600                                                                          <---------MYB52(1)                                <---------MYB52(1)           <---------ZAT2                               <----------DOF2               <---------At4g35610         <---------ANAC46 <---------GLK1(2)                  --------->At4g35610     <------NtERF2      --------->LBD16             --------->ATHB12   ------>ZmHOX2a(2)    ------>NtERF2   <---------ARR14(2)             <---------YAB1      <-----------------AGL2   <---------DEAR3(1)<------ZmHOX2a(2)           <----------DOF2 <---------ANAC46      ----------->HVH21 --------->WRI1     --------->ARR14(2)---------->DOF2>>>>>>>>>ARR2 ----------->HVH21  <-----------HVH21   tatcgctggcgatgtgttttccgatcccgattcctttagccaaagaatagcctttgattgtgaagctgtgtgatccgtttatggtctgtgtcaccgagag  939700              <------NtERF2             ------>NtERF2            <---------DEAR3(1)            --------->ALFIN1           --------->ATERF1(1)           <-------GAMYB                      <---------ZAT18          <---------MYB46(3)                 <---------ANAC58          <---------DEAR3(2)                 <---------ANAC58         <---------DREB2C(2)            <---------MYB46(3)         <---------At1g77200            <-----------RAV1(1)         <---------DEAR3(1)           <-------GAMYB        <------NtERF2         <---------HSFB2a(1)       <-----------HVH21      --------->HSFC1(2)      <---------DEAR3(1)      --------->HSFB2a(1)   <----------DOF2                 <-----------GT1     <------NtERF2            <---------HSFC1(2)  <----------DOF2      <----------DOF2  ------>ZmHOX2a(1)   agaagtcgtcgtcggtggcgatggcatttcgaaatttcgtcgttgttgctcgctcttttgcaatggattttgtctttgtaagtttttttcctctgtgaaa  939800                                                       --------->ZAT6                            ----                     ---------->DOF2               <---------WOX13(1)         <----------DOF2  <-----               *TSS --------->AtMYB61            --------->ATHB12  --------->ANAC58            ------               --------->ANAC46 ----------->GT1 <---------YAB1     --------->ANAC46 <---------AHL20(2)     --------->GLK1(1)    --------->MYB52(1)    --------->ICU4     --------->ANAC58 --------->AHL20(2)   atgacagatttcattacacagaccaaagcgacggtagtaaatctatagttatgattaacacaaaaaaactcgccatttttctttaaaaaattcttactga  939900                                               <---------bZIP60(1)                                               --------->bZIP60(1)                                   --------->AHL20(2)                                   <---------AHL20(2)       <---------YAB1    ----------->TBP       <---------O2      --------->AHL20(2) <---------AHL20(2)    --------->O2      <---------AHL20(2) --------->AHL20(2)  ------->GAMYB     --------->AHL20(2)--------->CCA1(2)  --------->MYB52(1) ------->GT1         <------ZmHOX2a(1) --------->ANAC58                   --------->AHL20(2) ----ZAT14         <---------TOE1(3)   --------->ANAC58            <---------ANAC46                 - --->ZAT14         <---------TOE2(3)   --------->ANAC46    *TSS  ------>NtERF2      <---------At4g35610   agtgaaattaaaatagaatttaaggatataaatagaattaaacgcaacgacgtcgtttgtatatcgctggctgagaaaaaatatgcagcgactgcgagag  940000                                                     --------->DEAR3(1)                                                   ------>NtERF2                                                   <------NtERF2                                                   <---------ATERF1(1)                                                  --------->ATERF1(2)                                                  --------->RAP2.3(2)                                                  <---------DEAR3(1)                                                  --------->DEAR3(1)                                                  <---------ATERF1(2)                                                  --------->RAP2.6(2)                                                 --------->DEAR3(2)                                                ------>NtERF2                                               ------>NtERF2                                               <---------SPL7                                               --------->LBD16                                         <---------ICU4                                        --------->ICU4       --------->DEAR3(1)          <---------ETT(1)<---------At4g35610    --------->DEAR3(1)             >>>>>>>>>>AtTINY2<------NtERF2    <---------ALFIN1          <---------HSFB2a(1)--------->RAP2.3(1)    --------->AtMYB61         --------->HSFB2a(1)--------->SPL7   <---------MYB55(2)         --------->HSFC1(2)--------->ATERF1(1)   --------->MYB46(3)         --------->At4g35610--------->ATERF1(1) <---------ALFIN1             <---------HSFC1(2)<---------ATERF1(1)         --------->GLK1(2) --------->ANAC46        <---------HSFB2a(2)  <---------RAP2.6(2)           --------->ARR14(2) --------->AtMYB61       --------->HSFB2a(2) <---------LBD16<---------GLK1(1)    <---------GLK1(2) -------->MYB46(3)   <---------ANAC46   <---------YAB1  <------ZmHOX2a(2)   <---------ARR14(2)     --   tcaccaccaccgaagacgcgttgtcttggagaagcttccgacattattccggccgccgatcgatttctccgatgtgcgaatttgattctcccatggctaa  940100                                                                                              -------                                                                                           <---------ARR14(2)                                                                                           --------->ARR14(2)                                                                                         --------->ANAC58                                                                                      <---------ZAT14                <-----------RAV1(1)                                                   --------->ZAT14               <---------MYB52(1)                                                  --------->At4g35610              <-------GAMYB                --------->TOE2(3)                      <---------DEAR3(1)          --------->ANAC46           --------->TOE2(3)         --------->MYB46(3) --------->ANAC46   --------->HSFB2a(2)               <---------DAG2    <---------ARR11(3)  ------>ZmHOX2a(2)<------ZmHOX2a(2)   <---------HSFB2a(2)      --------->TOE1(2)     <---------HSFB2a(2)<---------At5g28300 --------->ANAC58 ------->TOE1(2)<---------MYB46(3)   --------->TOE1(3)<---------GLK1(1)   <------ZmHOX2a(2)<---------ARR11(3)   accctcgagaactcgccgttgttgctcaaacctgcaaaaccttatccctaatctcgaaatctctaaccattcaccgatctctcgacgctgcacgatcctt  940200                                                                           ======================HOX2a_HOX2a                                                                           ------>ZmHOX2a(2)                                                                           =========================HOX2a_HOX2a                                                                          <---------GLK1(1)        <-                                                                          --------->GLK1(1)        --                                                                          <------ZmHOX2a(2)        --                                                                          ==========================HOX2a_HOX2a                                                                          =======================HOX2a_HOX2a                                                                         --------->AGP1           ---                                                                         <---------ARR11(3)       ---                                                                         <---------GLK1(2)------>ZmHOX2a(1)                                              <---------------AtSPL3     <---------ARR14(2)     -----                                              --------------->AtSPL3     --------->ARR14(2)     <----                                              --------------->AtSPL8     --------->ARR11(3)    ------                                             <---------ANAC55(2)        --------->At4g35610  ------>ZmHOX2a(1)                                             <---------ANAC46           <---------At4g35610  <-------                                           --------->CCA1(2)      <----------DOF2    <---------At4g35610                                          <---------ARR14(2)  --------->ANAC46     --------->REM1(1)-                                          --------->ARR11(1)  <---------ALFIN1--------->ANAC46 <-----    --------->ARR11(3)                    --------->ARR14(2)<---------ALFIN1  <---------ALFIN1 ------    <---------ARR11(3)          <---------GLK1(2) --------->SPL7 <---------DAG2  <----------DOF2----- -->TOE1(2)        <-----------GT1      --------->ANAC46   <---------REM1(2) <---------LBD16<--------   ggaaaacatctcaatcccgtttcacaactccatcgattctcaacgatacgcgtacttcatctacacaccttttcagatccccgcttcatctcctcctccg  940300          <---------MYB46(3) ------>NtERF2 ----------->RAV1(1) -----NtERF2   <---------At4g35610 ---->NtERF2   <---------ZAT2 ------->LBD16 --------->At4g35610 ------>DEAR3(1)     <---------At4g35610 ------>RAP2.6(2) <---------At4g35610 ---->LBD16   --------->ALFIN1 -----ATERF1(1)--------->ZAT2                                                                     <-- --->DEAR3(1) <---------ARR14(2)   --------->ARR14(2)                                 <---------ANAC58 --ATERF1(1)  --------->ARR14(2)   <---------ARR14(2)                                 <---------ANAC46 ---------->HVH21 --------->At4g35610------>ZmHOX2a(2)                       --------->SPL7       --- ----ALFIN1--------->ALFIN1     --------->ALFIN1                            ------>NtERF2      <----- --->ANAC46<------NtERF2     ------->TEIL                                <---------At4g35610 <------- ->NtERF2--------->ALFIN1 <---------YAB1       --------->ARR11(3)        --------->At4g35610 -------- -ALFIN1 <---------ANAC46 <---------ATHB12     <---------ARR11(3)     ---------->DOF2 <---------ANAC58   ccgcgacaatggtggggagctgctgctaatgaatgtggatcggagtctagaccttgttttgactcagtgagtgaaagcggacgttttggggtgagtttag  940400                                                                                             <-------                                                                                        --------->ALFIN1                                                                                      <-----------RAV1(1)                                     <---------ARR14(2)       <------NtERF2          ------->TEIL      <-----------RAV1(2)            --------->ARR11(3)      --------->LBD16     <---------TOE2(3) -------ZAT18                        --------->ARR14(2)     <---------LBD16     <---------DOF5.7(2) < ------>ZAT18                       <------ZmHOX2a(1)       <---------ANAC46    --------->MYB52(1)--- ----ANAC46                     <------ZmHOX2a(1)          <---------LBD16    <---------MYB52(2)  <-- --ZAT14                    --------->ALFIN1              <---------ANAC46   --------->At4g35610 <--- ->ZAT14 <------ZmHOX2a(1)--------->ALFIN1             <----------DOF2       <---------At4g35610 ----   tggacgagtcaggatgcgaatgcgagaggtgtgaggaaggatactgcaagtgtttagctttcgcggggatggaagagatagctaacgaatgtgggtcggg  940500  Previous    Next  AGI:  At3g03740.1    Description:  ATBPM4 (BTB-POZ AND MATH DOMAIN 4); protein binding. similar to ATBPM5 (BTB-POZ AND MATH DOMAIN 5), protein binding [Arabidopsis thaliana] (TAIR:AT5G21010.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67508.1); contains InterPro domain MATH (InterPro:IPR002083); contains InterPro domain TRAF-like (InterPro:IPR008974); contains InterPro domain BTB/POZ fold; (InterPro:IPR011333); contains InterPro domain Kelch related (InterPro:IPR013089); contains InterPro domain BTB/POZ-like; (InterPro:IPR000210); contains InterPro domain TRAF-type (InterPro:IPR013322); contains InterPro domain BTB/POZ; (InterPro:IPR013069) Range:  from: 936885    to: 939815    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g03750.1    Description:  SET domain-containing protein. Identical to Histone-lysine N-methyltransferase SUVR3 (SUVR3) [Arabidopsis Thaliana] (GB:Q9SRV2;GB:Q1HAZ4;GB:Q7Y033); similar to nucleic acid binding / transcription factor/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G23740.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67507.1); contains InterPro domain Pre-SET zinc-binding region; (InterPro:IPR007728); contains InterPro domain Post-SET zinc-binding region; (InterPro:IPR003616); contains InterPro domain AWS (InterPro:IPR006560); contains InterPro domain SET; (InterPro:IPR001214) Range:  from: 939959    to: 941596    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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