Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                            ----------->RAV1(1)                                          ------>NtERF2                                          --------->ORA47(1)                                         --------->DEAR4(1)                                         --------->RRTF1(3)                                         --------->At1g77200                                         <---------ETT(1)                                         --------->DREB2C(2)                                         --------->DEAR3(1)                                         ----------->HVH21                                         --------->RAP2.3(2)                                         --------->RAP2.3(3)                                        <------NtERF2                                        --------->ATERF1(1)                                        --------->DEAR3(2)                                        --------->RRTF1(1)                                        --------->ORA47(2)                                        --------->RAP2.3(1)                                        --------->ERF1                                       ------>NtERF2                                       <---------ATERF1(1)                                      <---------PCF2                                      <---------ANAC58                                      <---------ANAC46                                    <---------ANAC58                                      <---------DEAR3(1)                           <---------WOX13(1) ------AGL15                       <-----------RAV1(1)--------->At4g35610         <------------CBF ----->AGL15           ------->GAMYB --------->RAP2.3(1)                         --------->ATHB12 -------AGL2        ----------->RAV1(1)<---------RAP2.3(1)                --------->bZIP60(1) -------AGL3        --------->MYB52(1)--------->DEAR3(1)  --------->ARR14(2)    --------->ICU4 ------>AGL2       --------->MYB46(3)--------->ATERF1(1)  <---------ARR14(2)  <------------CBF ------>AGL3 <---------ANAC46    <-----------RAV1(1)  <---------At4g35610 <---------bZIP60(1)   tggtactagagggcttcgtgaacaacagaaggtttttgtggcgccgacaaatgggaagcggaaacgaagaaatgtgatggcattgattgaaggcgagtcg  19602300                                                                                                <----                                                                                               <-----                                                                                               ------                                                               <---------ANAC46               <------                                                             --------->MYB52(1)           <---------ZAT18                                                            ----------->HVH21 =======================               <---------WRKY12   ----------->GT1   ----------->GT1           <----------DOF2 =======             <-----------HVH21  <---------ZAT14   <-----------RAV1(2)      <---------ALFIN1   <------   agtcgagtcagactcggtcagagcgagttgagagagcagttaagaaacagtagcaggtagaaatgacggatgtgtccccactttcggaccagaccacttt  19602400       <<<<<<<<<AtCCA1       <<<<<<<<<AtLHY                                                                            <---    --------->LBD16                                                  ------>NtERF2               <---   --------->LBD16                                                  <---------ALFIN1           <-----  --------->LBD16                                          --------->ANAC58    <---------MYB59<------ -------GT1         ----------->GT1                        --------->ANAC58 <------ZmHOX2a(1)<------- ----ZAT14        <---------TGA1a                         --------->ZAT18 --------->ANAC58  <-------- --->ZAT14        <---------ANAC46                   <---------ALFIN1--------->LBD16     --------->ICU4 ---DAG2        --------->ZAT14                   <---------ZAT18   --------->DEAR3(1)<---------MYB52(1) ===========================bZIP_DOF        <-----------RAV1(1)     --------->ANAC46 <---------RAP2.6(3) ===========================bZIP_DOF      --------->ANAC55(2)      <---------LBD16   <-----------TGA1 ----DOF2       <---------ZAT14       <-----------HVH21   <---------ZAT18 --------->ANAC58  <--------   actccccgagttagcaagtgaagtgagaaaactgtctgtgtgtcacatgttggccactcgcgcgctatccccgcccaaggaccttaccgtcattttggtt  19602500                                                                                --------->HSFB2a(2)                                                                                <---------HSFB2a(2)                                                                               <---------LBD16                                                                           <---------DAG2                                                                           <----------DOF2                                                                         <-----------------AGL3                                                                         ----------------->AGL1                                                                         <-----------------AGL2                                                                         ----------------->AGL2                                                                         <-----------------AGL1                                                                   --------->ARR14(2)                                                                   <---------ARR11(3)    ----------->GT1                                                <-----------ARR10 ---MYB46(1)                      <-------GAMYB                    --------->ARR11(3) ---MYB83             --------->AHL20(2)                          --------->CCA1(1) ---P                 <---------AHL20(2)                  <---------ANAC58--------------->AGL15 -GAMYB              <---------AHL20(2)                   <---------ANAC46<---------DAG2     <------- --MYB46(3)      <---------AHL20(2)---------->ID1----------->GT1  --------->RVE1(1)     <----------DOF2 -TOE2(3) <---------ICU4         --------->MYB52(2)       <---------ANAC58<---------------AGL15    -- -YAB1   --------->ICU4          <---------MYB46(3) <---------AHL20(1)   ----------------->AG<-------   ggaaactagtaaaaattagtttatttattttttgtttgttgttttgtcaagtagtatatttcttggaaatatcttcccttttctgggatgcttttacttg  19602600                                                                                    -----------------                                                                                   ---------->DOF2                                                                               <---------AHL20(2)       <------ZmHOX2a(1)                                                       --------->AHL20(2)     --------->ANAC58                                                      --------->AHL20(2)     --------->ANAC58               --------->ANAC46                      <---------YAB1 --ANAC58                   <---------AHL20(2)--------->AHL20(2)        --------->YAB1           ---- ---->NtERF2               --------->AHL20(2) <---------AHL20(2)        <--------HAHB4    ----------- --ANAC58                --------->YAB1      --------->AHL20(2)        <---------YAB1   --------->GLK1(2)   gcgacccaaggaccaagagagaaccaaaaataaatctcacaaaacaaattaatacaaactactactatatactattattatttaaaaaagaatatgagaa  19602700                                                         --------->LBD16                                                         ------>ZmHOX2a(1)                                                --------->ANAC58                                                --------->ANAC58            <---------------AGL15            <---------SPL7           ----------------->AGL3            <---------SPL1(2)          ----------->GT1                  <---------------AtSPL3       ---------->DOF2                     --------------->AtSPL3                                 ---   <------------CBF            --------->ZAT18 --------->SPL1(2)                                 ---- --------->ARR11(3)            <---------ZAT14--------->SPL1(1)                                ------ ------->ANAC81  ---------->DOF2           *TSS--------->SPL7 ------------------------>ANAC81  ------ ------>DOF2--------------->AGL15        ------------------>SPL14                             ------- ------------->ANAC81          --------->ZAT14<---------SPL1(1)   ---------->DOF2           ---------   aaagaaattgaaagctaaaaaaagaaacagtagtgcagagggcagaccgtacggtattcctgaagagcgaaagaagagagagagagagagagagaccgac  19602800       <---------HSFC1(2)       <---------HSFB2a(1)                    <<<<<<<<<TBF1       --------->HSFB2a(1)      <---------CCA1(2)                                            -------- ------->DOF2                --------->HSFC1(2)                                              <------- ----->AtMYB61         <-----------HVH21   <<<<<<<<<TBF1                                    --------- >MYB83--------->HSFC1(2)    <---------HSFC1(2)                                             --------- >MYB46(1)        <---------ATHB12      <<<<<<<<<TBF1   <-----------GT1               <----------DOF2 -->ORA47(1)    --------->WOX13(1) <------------------------ANAC81                   <---------GLK1(2) >DEAR3(2)  ------>ZmHOX2a(1)--------->HSFB2a(1)   <----------DOF2       <----------DOF2  <---------LBD16   caaagaagaagctcctctcaatcactgtcgaagcatctcttcttcttcttcttctttttttcttctctctcagagcttttctaatcggcttctccggtaa  19602900                                                                                              -------                                                                                              <------                                                                                            <--------                                                                                            ---------         --------->MYB46(3)                                                               -----------        <------ZmHOX2a(2)                                         <------ZmHOX2a(1)      <---------At5g28300     <---------ETT(2)                                     <------MYB46(1)          <----------DOF2  - ->At5g28300         <----------DOF2                      <------MYB83   <-----------GT1<-----------GT1 --MYB52(1)  --------->DEAR3(1)                           <---------ANAC46      --------->ARR11(3)  - >LBD16--------->ARR14(2)                                --------->MYB111(2)    <---------ARR11(3)--- -->GT1<---------ARR14(2)      <-----------GT1           --------->MYB46(2)    <---------CCA1(2) ----   atctctgtcgatccaccgatgagcttttgacatttactctcttattagtttcttctagtttggtgagaggagtttttactagtatcttttttactgtaca  19603000 --------->ARR14(2) <---------ARR14(2)                                                   ------>NtERF2              <--- -->ZAT14                                                       --------->ZAT2                   ---- ---ZAT14                                                       <---------At4g35610            <----- -ZAT14                                                        --------->ANAC58               ------- >ZAT14                     --------->ANAC58                   --------->ANAC58             --------- ---->AtSPL8                --------->ANAC58              --------->At4g35610               <-------- ----->MYB46(1)             --------->ANAC46          <---------ARR14(2)                 ------------ ----->MYB83           ------->TEIL                   --------->ARR14(2)             --------->At4g35610 ------>AtMYB61 <------ZmHOX2a(1)       --------->ANAC46  <---------At4g35610        <---------At4g35610 ----->ANAC46 <---------TOE2(3)     ------>ZmHOX2a(1) --------->GLK1(2)        ----------->RAV1(2) --   ccaaatccctaaatttaaggacatgtatgctcgcaatcctcccctcaatggctcacaatctgctcaagctcccgactggacccctgcagatgccgatacc  19603100                                       --------->SPL1(2)       --------->ARR11(3)              --------->SPL7      --------->At4g35610       <---------ARR11(3)            --------->ZAT14       --------->LBD16 ------ZAT18                         <---------ZAT14   <---------ARR14(2) ----->LBD16                      <------------------SPL14 <---------At4g35610 ----LBD16                        --------->At4g35610  --------->ARR14(2) -->MYB52(1)                   <---------At4g35610    <---------GLK1(1) >ARR14(2)                    --------->ANAC46     <---------TOE2(3)          --------->At4g35610   - -ARR14(2)              <---------GLK1(2)      <----------DOF2              --------->ZAT14        <- ----->AGL1           ----------->ARR10--------->ZAT14--------->GLK1(1)     <---------ZAT14        -- ------->SPL7       <----------DOF2  <---------SPL7<---------TOE1(3)   ----------->HVH21           <-   ggactccaaggtctcgcatgcgctttgattctcagcaactgtacggtctctttagggtttccgctaaatggccctgactgtgctcaattttgtgatttgc  19603200  Previous    Next  AGI:  At2g47844.1    Description:  unknown protein Range:  from: 19602363    to: 19602509    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g47850.1    Description:  zinc finger (CCCH-type) family protein. Identical to Zinc finger CCCH domain-containing protein ZFN-like 1 [Arabidopsis Thaliana] (GB:Q84W91;GB:O82252); similar to nucleic acid binding [Arabidopsis thaliana] (TAIR:AT3G06410.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22402.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571) Range:  from: 19602743    to: 19605651    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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