AthaMap TU-Logo
Search
 
   Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
Go to graphical and table display 

1        10        20        30        40        50        60        70        80        90        100 
                >>>>>>>>>>AGL24
                >>>>>>>>>>AGL20
                >>>>>>>>>>AGL22
            <-----------------AGL2
           --------->At4g35610
           <---------At4g35610
           ----------->GT1
          --------->ANAC58
      --------->ANAC58
      --------->ANAC58
    <------NtERF2<---------ICU4                       <---------YAB1
    <-----------RAV1(2)  <---------ALFIN1    <-----------GT1
------->DOF2<-----------------AGL3      <---------ANAC46 --------->CCA1(2)    <---------ARR14(2)
>RAV1(1)  --------->ANAC58  --------------->AtSPL8    <---------TOE2(3)       --------->ARR14(2)  --
 
caaaggcgcagggaagctaaatatggcccaacttgtactatttccgtttaacgcgttaagatagaaacgaatcaaatggactatccactcacagaaaaca  19557600
                                                                                                  <-
         <-----------HVH21                                                                  --------
        --------->bZIP60(1)                                                                 --------
  --------->ARR14(2)                                                                       ---------
  <---------ARR11(3)                   <---------ARR14(2)                                  <--------
  --------->ARR11(3)            ------->GAMYB        ----------->TGA1                    ------->GAMYB
  <---------ARR14(2)         --------->MYB52(1)    <---------ICU4                       --------->ANAC58
  --------->GLK1(2)    <---------GLK1(1)        --------->YAB1                          --------->ANAC58
------->YAB1      <------ZmHOX2a(1)   <---------GLK1(1)       <----------ID1          --------->MYB52(1)
 
ttcaaaatctggtgtcatacaggaagaaaccccaacggagcatttctgtaatcaaaatgacgaagacgacaaaacaaaaacaaaaaccccaacggaaatg  19557700
                                                                           --------->SPL7
    <---------------AGL15                                                 <---------ARR14(2)  <-----
    --------------->AGL15                                                 --------->ARR14(2) ------>NtERF2
--------At4g35610                                                      <---------TOE1(2)    --------
-->DOF2                                                                <---------TOE2(2)    --------
->GLK1(1)                          ----------->GT1              <---------ANAC58            --------
>ARR14(2)             <---------LBD16 >>>>>>>>>>GT-3b           <---------ANAC58           ---------
-ARR14(2)  <---------ZAT6    --------->TOE1(2)       ---------->DOF2  <-----------RAV1(2) <---------ATERF1(1)
 
cagattactaactagagtaagtcgtctcggaacgaaggaagaaaaatagaataagagaaagaagaaggcgagcgcaggtaccgcatccaggctcgccgac  19557800
                     <---------ARR14(2)
                     --------->ARR11(3)
       --------->ANAC55(2)
       <---------ANAC55(2)
       --------->bZIP60(1)
       <---------ANAC46                              --------->ATHB51
    ----------->TGA1<------ZmHOX2a(1)               --------->ICU4
    ----------->HVH21--------->ARR14(2)           <---------------AGL15                   <---------DOF5.7(2)
-NtERF2<---------bZIP60(1)                       ----------------->AGL2                   --------->MYB52(1)
--->HVH21      <---------HSFB2a(2)               <-----------------AGL3               <---------TOE2(3)
->DEAR3(1)     --------->HSFB2a(2)      <----------DOF2                               <---------TOE1(3)
->At1g77200 --------->GLK1(2)    <---------GLK1(2)--------------->AGL15             ---------->DOF2
>DEAR3(2)  <---------GLK1(2)   <---------YAB1    ----------------->AGL1       <------ZmHOX2a(1)    <
 
gatgagagtgacgcgattctcgaggattttgtcgatgattctccttttcatcgccataatcggaagcgaagcgaagttggaggagggtaaaggtaacgat  19557900
                               ------->GAMYB<---------SPL7
                               --------->ANAC46      <---------ZAT14
                               --------->DEAR3(1)    --------->ZAT14
                               --------->RAP2.6(2) <------NtERF2
                              --------->MYB46(3) --------->ANAC46
                              --------->DEAR3(2)<---------LBD16            --------->ANAC46
                              <------------AtMYB77--------->LBD16         *TSS
                    <---------ORA47(2)     <---------ANAC58             --------->ZAT14
    --------->ZAT2 <---------DEAR3(1)      <---------ANAC58             <---------ZAT14 --------->ZAT14
    --------->At4g35610     --------->ARR14(2)--------->SPL7            <---------REM1(2)         <-
   --------->ARR11(3)<------NtERF2   <-----------RAV1(1)   XXXXXXXXXXXXXXXXXXXX>MIR413  <---------ZAT18
---------At4g35610 <---------DREB2C(2)    --------------->AtSPL3     ------>ZmHOX2a(1)  <---------ZAT14
 
tcagaagagctggaagacgaagtcggcgaagaaaccgccattgttgtcgtacgcggagcactgtctctcttcctctacacacagagtctagtccagtctc  19558000
                                                                                   --------->SPL7
                                                                                   ------->TEIL
                                                                                 <---------SPL7
                                                                                <---------ANAC58
                                                                                <---------ANAC58
                                                                         ----------->HVH21
                                                                        <-------TEIL
                                                                       --------->ALFIN1           <-
                                                                     --------->At4g35610    <-------
                         ------>ZmHOX2a(1)                           <---------At4g35610  --------->At4g35610
                  --------->YAB1                                     --------->ZAT2<---------TOE2(2)
               --------->WOX13(1)                 <----------DOF2  <-----------RAV1(2)    <---------At4g35610
             ------------>CBF------>ZmHOX2a(1)   <----------DOF2  <------ZmHOX2a(2)<---------TOE1(2)
--------MYB52(1) <---------ATHB12     <----------DOF2            <-----------HVH21 <-------TEIL  <--
 
tggtatttctaatactgccaatcacatccttcctctctacgcttttaggggggttttaggggagcgtcgatcaggtgcgacgagcgtacgtttagctcgc  19558100
                                                            <---------REM1(2)
                                                          --------->ARR14(2)
                                                   <---------ANAC58
                                                   <---------ANAC46        <---------ANAC58
                                                   <---------ANAC58        <---------ANAC58
    ------>ZmHOX2a(2)                             <---------LBD16        --------->ARR11(3)
  --------->ARR11(3)                             --------->ALFIN1    --------->ZAT14           -----
  <---------ARR11(3)                           <---------ANAC58      <---------ZAT14      --------->TOE2(2)
------GAMYB                          ----------->GT1      <---------ARR14(2)     ------>NtERF2 <----
--ZAT18               --------->WRKY45         <---------ANAC58  <---------ALFIN1--------->LBD16<---
-------MYB46(3)       --------->WRKY38(1)      --------->ALFIN1--------->ANAC46 <---------ANAC46<---
 
tcgttgatctctcaagtctaataagttgactaggtttgactagtcaaaatgtgtgcgggtgtatacacacactggagagcttgccgcgaattacctaggt  19558200
                                               --------->YAB1
                                              <---------ATHB12
                                            --------->WOX13(1)
                                          <------NtERF2
                                          ------------>CBF
                                         <---------RAP2.6(3)
                                         ------>NtERF2
                                         --------->LBD16
                                        --------->RAP2.6(2)
                                        --------->RAP2.3(3)
                                        >>>>>>>>>AtERF-3
                                        --------->ATERF1(2)
                                        <---------ATERF1(2)
                ----------->TBP         >>>>>>>>>AtERF-4
      ---------->DOF2                   --------->RAP2.3(2)                                        <
     <------ZmHOX2a(1)                  --------->DEAR3(1)                                      <---
   <---------TOE2(3)                   --------->RAP2.3(1)                                     <----
---->PCF2 <------ZmHOX2a(1)          --------->ALFIN1                <------ZmHOX2a(1)       -------
-----TCP15(1) <-----------TBP    ---------->DOF2                    ----------->GT1          <------
--------------AG--------->AHL20(2)--------->DAG2               --------->DAG2              ---------
--------------AGL1   --------->ARR11(3)--------->ERF1         ---------->DOF2             --------->DEAR3(2)
 
cccactaaggaaaggacatatatatatcatgggcaaaaaagtgccgccaatcaaaacacttgaaaaaaagcaggaaaaaaacttacaaatagaaccggcc  19558300
                                         <-----------HVH21
                       <---------------AGL15
                      <-----------------AGL3
                      ----------------->AGL2
                      <-----------------AGL2
                      ----------------->AGL3
                      <-------TEIL   <---------LBD16
--------->YAB1        ==============================================================================
---------ATHB12   --------->DAG2  --------->ARR11(3)
------ALFIN1     ---------->DOF2  <---------ARR11(3)
-----ZAT18    --------->AHL20(2) --------->GLK1(1)
-->PCF2       --------->YAB1     <---------CCA1(2)        ------->TEIL                 --------->GLK1(2)
---PCF5 ----------->GT1--------------->AGL15 --------->AtLEC2                          ------->TEIL
>DEAR3(1)  --------->YAB1        <---------GLK1(1)---------->DOF2                --------->WRKY12
 
cactcatagcccagtaataaaaaagtccattaatggatatctcgggtcatccaaaaacccgaacccgaaccattttcgatgaagttgacgaacctgtctg  19558400
                                              ----------->GT1
                                             --------->ALFIN1
                                          <------NtERF2
                                        <---------ANAC46
                               --------->ARR14(2)
                               <---------ARR14(2)
                              <------ZmHOX2a(1)
               --------->ARR14(2)      <------NtERF2
               <---------ARR14(2)     <---------SPL7                                  <---------AtLEC2
            ----------------->AG     <---------ANAC58                               <---------HSFB2a(2)
            ----------------->AGL1   <---------DEAR3(1)               <---------At4g35610
     <---------ANAC58   <------MYB46(1)--------->ATERF1(1)            --------->GLK1(1)     --------
     <---------ANAC46   <------MYB83 <---------ANAC46           --------->MYB52(1)  --------->HSFB2a(2)
     <---------ANAC58 <--------P     <---------ANAC58--------->MYB52(1)            <---------LBD16
<-----------RAV1(1)  <-------GAMYB   <---------bZIP60(1)       ---------->DOF2  <---------GLK1(1)
==============================MADS_MADS--------->ALFIN1  ----------->GT1  --------->TOE1(2) <-------
 
gttttgttgcgttcttccgatttgggttggagaggaaatggcgtcgggatggggaataacgggaaacaaagggagatgctacgatttctggatggatttc  19558500
<- Previous    Next ->

AGI:  At2g47680.1   
Description:  zinc finger (CCCH type) helicase family protein. similar to ATP binding / helicase/ nucleic acid binding [Arabidopsis thaliana] (TAIR:AT2G01130.1); similar to hypothetical protein OsJ_001122 [Oryza sativa (japonica cultivar-group)] (GB:EAZ11297.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40002.1); similar to ATP-dependent RNA helicase A -like [Oryza sativa (japonica cultivar-group)] (GB:BAE95808.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571); contains InterPro domain Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); contains InterPro domain DEAD-like helicase, N-terminal (InterPro:I
Range:  from: 19552898    to: 19557975    Orientation: Reverse
Links:  TAIR  MIPS 
 
AGI:  At2g47690.1   
Description:  NADH-ubiquinone oxidoreductase-related. similar to NADH-ubiquinone oxidoreductase-related [Arabidopsis thaliana] (TAIR:AT3G62790.1); similar to NADH-ubiquinone oxidoreductase-like protein [Camellia sinensis] (GB:ABY77914.1)
Range:  from: 19558333    to: 19559428    Orientation: Forward
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

    printer-friendly version