Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                   <------ZmHOX2a(1)                             ------     <-----------GT1                       <---------YAB1                                 <------ZmHOX2a(1) <---------AHL20(2)                     --------------->AGL15                      >>>>>>>>>>WRKY43 --------->AHL20(2)                     <---------MYB52(1)                         >>>>>>>>>>WRKY26-- --------DOF2<-----------GT1           <---------DAG2        <---------ANAC46      >>>>>>>>>>WRKY38-- ->DOF2      ------->TEIL    <---------WOX13(1)<---------TOE2(3)----------->GT1--------->GLK1(2)-----   cttttaattacgatgtaacttgactcactagattgccatccccttattttaggaagttgtattaagtggaaattactggagaatttgaccaaggacaaaa  17497100                        --------->ZAT18                      --------->ARR14(2)                      <---------ARR14(2)                      --------->REM1(2)                   <---------ANAC46                   <---------ANAC58          --------->YAB1                   --------->ANAC55(2)      <---------ATHB12                   <---------ANAC58        ------>MYB83              <-------TEIL                 ------>MYB46(1)             --------->CCA1(2)          --------->MYB46(3)       <------ZmHOX2a(1)<---------ZAT18--------->ANAC58 ---->DOF2 <------ZmHOX2a(1)           --------->ANAC58 ------->TOE2(3)   <---------ANAC55(1)--------->WOX13(1) ------->TOE1(3)  <-------TEIL     <-----------HVH21 ------>NtERF2                       ------->TEIL ---->DAG2----------->GT1<---------ALFIN1 --------->WOX13(1)  <---------CCA1(2)   <---------YAB1   agcttaataggaaggatacatgcgtgtccacttccgatgtcaaccaatcataccctgccaactcatatatcggaagtcgaattgactattgtacccttgt  17497200                          --------->At4g35610                          <---------At4g35610                          <---------ZAT2                    --------->ALFIN1                  <---------TGA1a                  <---------ANAC46                  <---------O2                                                   <------ZmHOX2a(2)                  <---------bZIP60(2)             <---------AHL20(2)            <---------AGP1                  <---------ANAC58         --------->ICU4           <------MYB46(1)                  --------->O2      <---------ANAC58              --------->ALFIN1------>ZmHOX2a(2)                  <---------ANAC58  <---------ANAC46             <---------MYB52(1)               ----------->HVH21    <---------ANAC58   ----------->GT1----------->GT1          <-----               ----------->TGA1    <---------MYB46(3) <-------TEIL<--------P    --------->ARR11(3)  <             <---------ICU4<---------GLK1(2)     --------->AHL20(2) <------MYB83<---------ARR11(3)---   gttctactgtcttagttatgacgtggacagcttctattggttgtagtgattttaaattcgtaaaacgggtaggggttaataagatctcatagtagcgctt  17497300                                                 <----------DOF2                                         --------->AHL20(2)                                         <---------AHL20(2)                                    --------->AHL20(2)                                <---------AHL20(2)                                --------->AHL20(2)                                   --------->TOE2(3)                                <---------AHL20(1)                             <---------ICU4                                --------->AHL20(1)                          <---------AHL20(2)                             --------->AHL20(2) <---------ANAC58           --------->AHL20(2)                   <---------AHL20(2)--------->AHL20(2)                <---------AHL20(2)     --------->TOE2(3)    ------>ZmHOX2a(1)     <---------ANAC58       <---------AHL20(1) -----DOF2         --------->AHL20(2)<---------AHL20(2)                --------->AHL20(2) ----------DOF2   <---------AHL20(2)<---------AHL20(2)                 --------->AHL20(1) ------->ID1   <---------AHL20(2) --------->TOE2(3) ----------------->AGL1<---------YAB1   --------->ANAC46   gtctttttcttaattgtttatttatttcctataaaatattaatttaaatagctttccctattggatagcgaaatttattaaaaatttcattaaacgaaaa  17497400                                                                                   *TSS                                                                                 --------->ZAT2                                                                             ------>ZmHOX2a(2)                                         <---------AHL20(2)                 --------->CCA1(2)                                         --------->AHL20(2)                 <------ZmHOX2a(2)                                        <---------AHL20(2)                 --------->ARR14(2)                                     <---------AHL20(2)                    --------->ARR11(3)                                    <---------AHL20(2)----------->GT1      <---------AGP1                                  <---------ICU4      --------->ALFIN1     <---------ARR11(3)                                 --------->ICU4     <---------ANAC46       --------->AGP1     ----------->GT1           --------->YAB1     <---------ANAC46        <---------GLK1(1)  --------->ALFIN1            --------->AHL20(2) <---------LBD16         ----------->ARR10 --------->HSFC1(2)      <------ZmHOX2a(1)   <---------AHL20(2)<----------DOF2   <---------ZAT2 <---------HSFC1(2)   <---------LBD16--------->AHL20(2)     <-----------GT1<---------ARR14(2)       <   cgaagtgtcgaaaaatgttttttctcaggaaaataaaaattatttattttttgggggtgtaaatacttttctagtgagatctgagcttgggaaatggaga  17497500                                                                                           --------->ARR11(3)                                                                                   <---------ANAC58 -                                                                                <-----------GT1    --                                                                              <---------ICU4      <--                                                                             <---------YAB1<---------ARR11(3)                                                                          <---------AHL20(2)     <---                                                                          <---------YAB1   <---------GLK1(2)                ------>ZmHOX2a(1)                                     <----------DOF2      --------->ARR14(2)          --------->ANAC58         <<<<<<<<<TBF1            <---------ZAT14<-----------GT1 <---------ARR14(2)          --------->ANAC58      <<<<<<<<<TBF1      ---------->DOF2 --------->GLK1(2)     <---------TOE1(2) ---------HSFB2a(2)          <<<<<<<<<TBF1    ---------->DOF2     <---------GLK1(2)<---------ANAC58<-   ttgtagaagaacaagctcctctcaccatttcttcttcttcttctctctaaaagaaaagagacttcaccgattcttttttattattccttcccagattttc  17497600                                                                           <-----------GT1                                                                   ------>ZmHOX2a(2)                                                                  <------ZmHOX2a(2)                                                                 --------->ARR11(3)                                                              ------>ZmHOX2a(1)                                                              --------->HSFB2a(2)      --------->AHL20(2)                           --------->ZAT6<---------AGP1      <---------AHL20(2)                       ==========================HOX2a_HOX2a     --------->AHL20(2)                        ------>ZmHOX2a(1) --------->AGP1 -------->LBD16                                ===========================HOX2a_HOX2a ------->HSFB2a(2)     <----------DOF2        --------->TOE2(3)  <---------ARR14(2) -------LBD16        ------>ZmHOX2a(1)        --------->ANAC55(2)--------->ARR14(2) ------LBD16<----------DOF2                   <---------ANAC55(2)<---------ARR11(3)                -- --------HSFB2a(2)------>ZmHOX2a(1)           --------->TOE1(3) <---------CCA1(2)        <-----------GT1   tcgggaaattaattcttttcctcctctttcttctcacttgttgttgttccttaacactctcttcctagatctactattaactgatttcatttcacgacta  17497700                               <-----------GT1                    --------->CCA1(2)                   --------->ARR11(1)                   <---------ARR14(2)                   --------->ARR11(3)                   --------->ARR14(2)                   <---------ARR11(3)                                 --------->DAG2    --------->MYB52(1)                 --------->ANAC58                                   ---------->DOF2    --------->AtMYB61                 ----------->ARR10                            ----------->GT1         --------->MYB46(3)             <---------HSFB2a(2)                          <---------HSFB2a(2)      --------->ETT(2)             --------->HSFB2a(2)                          --------->HSFB2a(2)      <---------ETT(2) ------->MYB46(3)--------->ANAC58                       <---------ATHB12   ----------->ARR10  <------   aaccatcgaagtcttcggcaagatatggatttgtttctgttctattaaacttgtttcaatcgagaagtaaaaaaggtgagatttgtcgaccatcggaggc  17497800                        <<<<<<<<<MYB2                      <------MYB83                                                            -------                      <------MYB46(1)                                                         <------                   <---------MYB52(1)                                                      --------->At4g35610           <---------YAB1                      <---------YAB1       ---------->DOF2 <----------DOF2   <---------TOE1(3) <---------AtMYB61       <---------AHL20(2) ------->TEIL    <----------DOF2 ---ATERF1(1)--------->ARR11(3) ------>ZmHOX2a(2)        <----------DOF2<---------GLK1(2)--------->ZAT18   ctcttatggtttgatgatatcgtttggttttcgatcgtctcaagtttttatttttggttctttctgaatctaaagcttctccctttctttgttcgctgta  17497900                                                    <-------TEIL                                                   <------ZmHOX2a(2)                                                  --------->ARR14(2)                                                  <---------ARR11(3)                                                  --------->AGP1                                                  <---------ARR14(2)                                                  --------->ARR11(3)                              ---                                        --------->ANAC46                                         <---                                        --------->ANAC58                                   ----------                                        --------->AtLEC2                                   <---------       ------->TEIL                     --------->ANAC58                                   ========== -->ZAT14                   <---------ANAC46  ---------->DOF2                          <----------DOF2 ---ZAT14<---------AHL20(2) ----------->GT1----------->RAV1(1)<-----------ARR10        --------------   gtctctatgaattttttgagaaaaaaaacgtcgtgaaataacatgcaacaaagatccatttgagtttcttctctatttgtctattttgactttgttttta  17498000  Previous    Next  AGI:  At2g41900.1    Description:  zinc finger (CCCH-type) family protein. similar to zinc finger (CCCH-type) family protein [Arabidopsis thaliana] (TAIR:AT5G12850.1); similar to Zinc finger, CCCH-type [Medicago truncatula] (GB:ABN08215.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40846.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23558.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571); contains InterPro domain Ankyrin (InterPro:IPR002110) Range:  from: 17497483    to: 17501000    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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