Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                            --------->At4g35610                                                                        --------->YAB1                                                                 -------->P                                                                 ------>MYB83                                                                <---------ALFIN1                      <-----------HVH21                         ------>MYB46(1)              --------                <---------ARR14(2)                            --------->MYB46(3)            -------->P                --------->ARR14(2)                            <---------MYB59              --------->WOX13(1)             --------->ANAC58                             ----------->HVH21       <---------DAG2        --------->ANAC58  ----------->RAV1(2)         <---------ATHB12  <---------ICU4 --------->YAB1 --ANAC58    --------->ANAC58                       ------>MYB83------>MYB83   <---------ALFIN1 --ANAC58    --------->ANAC46       --------->YAB1  ------>MYB46(1)--------->TOE2(3)  <---------YAB1 --GT1  --------->ANAC58<---------ALFIN1          <---------MYB59------>MYB46(1)  --------->TOE2(3)   ccaaatgagcaagacccgaaaccccttcacctggaccatcaaaacttgcagaccaaatcactgacccaacctcatcatcagacaccttattatcaaccaa  17028000                                                                                               ------                                                                                            ---------                                                                                     --------->TOE2(3)                                          --------->TOE2(3)                          --------->TOE1(3)                                          --------->YAB1                          <---------ARR14(2)                                        ------>MYB83                              --------->ARR14(2)                                        ------>MYB46(1)                        --------->RAP2.6(2) ->MYB46(3)                       ----------->HVH21 <------ZmHOX2a(2)     ---------->DOF2   ---------   ttccaaagttatatcactcgaagacaaaaccggccagtgaccaagcttaatccgatcaacaaaattagtcacattgcaaagccgaaaccgtaacgagcaa  17028100                                                    <-------MYC3                                                    <-------MYC2              --------->TOE1(3)                     ------->MYC2      --------->ICU4                                ------->MYC3      <---------YAB1                               --------->ANAC46    --------->YAB1                               <---------ALFIN1   <------ZmHOX2a(2)                            <---------REM1(2)  --------->ARR11(3)           --------------->AtSPL3                                              <-  <---------ARR11(3)           --------------->AtSPL8                    <---------MYB52(1)        -- --->WOX13(1) --------->TOE2(3)<---------------AtSPL8                   --------->TOE2(3)      ------ >ANAC58    ------->TEIL       <---------------AtSPL3        --------->ZAT6            --------->At4g35610 >ANAC58    -------->P    <---------ANAC46     ------>ZmHOX2a(1)      <-------TEIL     <---------At4g35610   tccagatcatgatcaacctcaataggttttgtgaatgtactactacttcctacacgttctcttacactaaaattcgttagaacaacttcagctaaatcaa  17028200         --------->ZAT2         <---------ZAT2         <---------At4g35610         --------->At4g35610      <---------At4g35610                                                                   ---------      --------->At4g35610                                                                   <--------      <---------ZAT2                                                                        ---------     <-----------RAV1(1)                                                                    <--------   --------->At4g35610                                       --------->ARR11(3)      ------->TEIL   <   <---------At4g35610                                       --------->ARR14(2)   ----------->HVH21 -  <-----------RAV1(1)                                       <---------GLK1(1)    --------->ANAC46<--- --------ARR14(2)                                <---------RAP2.6(2)            <---------LBD16<----- ------->ARR14(2)                         --------->ANAC55(2)<---------ARR11(3) ----------->RAV1(2)-- ---->DOF2    --------->LBD16             --------->ANAC46  <---------CCA1(2)   --------->At4g35610<-   agttctgctgctgctccgaaactcgactacttaaacatatgttcacataatacggcttatcgatatcttcaacattcttgtcccctgaaccctcagcttc  17028300   ------>NtERF2   --------->LBD16  <---------ANAC46                                                <---------ANAC58 <---------LBD16                                                  <---------ANAC46 <------NtERF2                                               --------->ALFIN1 --------->ATERF1(1)                                        <----------CDC5              <---------ATHB12 >ZAT2                                                    --------->ANAC58             --------->ANAC46 -ZAT2                                                    --------->ANAC58            --------->MYB46(3) >At4g35610                                               --------->ANAC46          -------->P -At4g35610--------->ATHB12                            <---------ZAT14              ------>MYB83 ---------RAP2.3(1)                                    <---------ZAT18              ------>MYB46(1) ----->NtERF2                                          --------->ZAT14      <----------DOF2 --------HVH21                                       --------->ANAC46      <---------ANAC58 --TEIL  <---------WOX13(1)                         ------>MYB83  <---------ANAC58 ------>ZmHOX2a(1) ------->DEAR3(1)      --------->ARR14(2)           ------>MYB46(1)        <---------ANAC58     ----- --------DEAR3(1)      <---------ARR14(2)          <---------ALFIN1     <---------WOX13(1)--------->ZAT6   gtcgccgggtaattgatttctatcggattcagaaccagttggagtgatcaaacccactgcacgctggggcttggattgctttctcctacccatcactaag  17028400                                                                    ----------->HVH21                                                               --------->ANAC58                                                       --------->ANAC58       ------------>CBF                                                       --------->ANAC46  <----------DOF2                                  ----------->GT1      --------->ANAC58  <---------DAG2                          --------->YAB1 --------->AHL20(2)    --------->ANAC46 ---->At4g35610        <---------ARR14(2)<---------AHL20(2)    --------->ANAC58    --------->AHL20(2)   ctaaaatagaaacttcagtactgcgaattcataaacaagataaaaaaattcaaaaacacacaaacaagctatgacctttatgcaatttcatagctcaaac  17028500                                                                                                   <-                                                                                                 <---                                                                                                 ----                                                   --------->ANAC46                            <-----                                   ----------->GT1 --------->ANAC58                          --------                               <-----------GT1     --------->ANAC58               <---------YAB1-----          ------------>CBF <------------CBF     --------->TOE1(2)       --------->CCA1(2)    --------     <---------DAG2       --------->ATHB12--------->AHL20(2)         <---------YAB1*TSS    ------->TEIL     <----------DOF2     <---------YAB1   <---------AHL20(2)      <---------MYB52(1)       --------->GLK1(2)   ccaaaaactttatgcaatttcaaaatagttattgaaccagttatataattcatacgaaaacaaactcagttacgatatgaaaacatgattccgaacctgt  17028600                                                                           <------NtERF2        <----          <---------ARR14(2)                                              --------->LBD16       -----   ---------->DOF2                      <---------LBD16                  <---------ANAC46       ----- --------ANAC46                        --------->MYB52(1)                --------->DEAR3(1)     <---- ------ZAT14                          ----------->HVH21               ------->GAMYB            ------ ----->ZAT14                         --------->DEAR3(2)              --------->MYB46(3)        ------ ------HVH21                        <---------ARR14(2)            ---------->DOF2              <----- ->TOE2(2)--------->GLK1(2)         --------->ARR14(2)  <---------ANAC46<---------LBD16       ------- ------>HVH21                    <---------ANAC58       --------->ALFIN1<------NtERF2     --------->DEAR3(2) ->TOE1(2)--------->ARR14(2)     <---------ANAC58      <------ZmHOX2a(1)--------->ATERF1(1)--------->DEAR3(1)   gaagtgaaagagaattcgttcaaaattcagaaattgcgaatcgacggagactatggaggagtggaatttcaagcgccggagaagattaatagaccgccgc  17028700                                                   <---------ANAC46                                                   <---------ANAC58                                                   <---------ANAC58       --------->MYB52(1)                     <---------TGA1a       <-----------GT1                        <---------bZIP60(2)    --------->YAB1                            <---------ANAC46   <---------YAB1                             ===========================================bZIP_DOF  --------->AHL20(2)                          --------->TGA1a -----ANAC46                                  --------->O2                                 <--------- ---->bZIP60(2)                               <---------O2                            <---------AHL20(2) ---->O2                --------->At4g35610----------->HVH21                  <----------DOF2 -----O2 <---------ANAC55(2)               --------->DEAR4(1)           --------->ANAC46   --------->MYB52(1) >NtERF2 --------->ANAC55(2)               --------->At1g77200       --------->ZAT18  --------->AHL20(1) --->LBD16              <---------At4g35610--------->DEAR3(1)        <---------ZAT18  --------->AHL20(2) -NtERF2<---------TOE2(3)                  --------->DREB2C(2)    --------->YAB1 --------->AHL20(2) - -->DEAR3(1)    <---------LBD16           --------->DEAR3(2)--------->YAB1  <---------At4g35610  ----   gtgatataataacgtattgccggtttatctgccaattcgtttgcaccgacgtggcttgagaatgacaatagtaccctcagcttttaaataaaataacgaa  17028800                                              --------->ANAC46                                              --------->ANAC58                                              --------->ANAC58                                         --------->ANAC58                                         --------->ANAC46                                       <----                                        --------->RAP2.6(3)                                    <-----                                     ---------->DOF2                                          <------                                  ----------->GT1           --------->TOE2(3)              <--------- --GT1------>ZmHOX2a(1)          <---------HSFB2a(2)------->GAMYB                         ------>ZmHOX2a(2) ------->P                 <---------YAB1--------->ANAC58   --------->TOE1(3)           <---------ARR11(3) ----->HSFC1(2)           ----------------->AGL1 --------->MYB52(1)                     --------->ARR11(3)   actacctcctcttctctattggaactattccgattccagtaaaacggcacacaactgcaaaaccctaatctcaagttttctgtcgattttgatcttttgg  17028900  Previous    Next  AGI:  At2g40770.1    Description:  SNF2 domain-containing protein / helicase domain-containing protein / zinc finger (C3HC4 type RING finger) family protein. similar to RAD5, ATP binding / DNA binding / helicase/ protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT5G22750.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41527.1); similar to hypothetical protein OsJ_024588 [Oryza sativa (japonica cultivar-group)] (GB:EAZ41105.1); similar to SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp. patens] (GB:EDQ82938.1); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterP Range:  from: 17020347    to: 17028393    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g40780.1    Description:  RNA binding / translation initiation factor. similar to F-box protein-related [Arabidopsis thaliana] (TAIR:AT2G40910.1); similar to Os03g0114200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048742.1); similar to hypothetical protein OsJ_008826 [Oryza sativa (japonica cultivar-group)] (GB:EAZ25343.1); contains InterPro domain Eukaryotic initiation factor 1A (eIF-1A); (InterPro:IPR001253); contains InterPro domain S1, IF1 type; (InterPro:IPR006196); contains InterPro domain Nucleic acid-binding, OB-fold (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold-like (InterPro:IPR016027) Range:  from: 17028583    to: 17029994    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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