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UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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  <---------AHL20(2)
  --------->AHL20(2)
 <---------YAB1
---------ICU4
--------HAHB4
-------->ATHB51                                                     --------->LBD16
--------YAB1                                                       <---------ANAC58
------->ICU4                                                       <---------ANAC58
-----HAHB4                                 <---------WRKY12        <---------ANAC46
------ICU4                                 <---------WRKY38(1)   ------>NtERF2
----->YAB1                                --------->WRKY18(1) --------->At4g35610
-----ATHB12                          <---------ANAC46         ------>ZmHOX2a(1)
---->ICU4                            <---------bZIP60(2)      <---------At4g35610
-----YAB1                            <---------ANAC58     --------->ARR14(2)
-->YAB1                              <---------ANAC58     <---------ARR14(2)       --------->MYB52(1)
--AHL20(2)                    --------->ARR11(3)    <-----------GT1<---------ANAC55(1)             -
 
cattattaattaagtctcaaaacatatatagaagaccatgacttggtcaatgttattaccagttcctctgccgtgtttataacaaaaaacgaactcgccc  17003900
                                          ------>ZmHOX2a(2)
                                         <------ZmHOX2a(2)
                   <---------WRKY12     <---------AGP1
                   <---------WRKY38(1)  <---------ARR11(3)
               --------->LBD16          --------->AGP1
           ------>NtERF2                --------->ARR11(3)
          <---------ETT(1)             <---------CCA1(2)
          --------->DEAR3(1)   --------->TOE2(3)                                     ----------->GT1
          ----------->HVH21   --------->ATHB12                                 <---------MYB52(1)
      <---------GLK1(1)       --------->YAB1                                  --------------->AGL15
     <---------ARR14(2)       <---------ICU4                                  ======================
     <---------ARR11(3)       <--------HAHB4                                  --------->TOE2(3)
     --------->ARR14(2)      <---------YAB1                                  ----------->GT1
     --------->ARR11(3)      --------->ICU4<----------DOF2                 <-----------GT1     <----
------>ZmHOX2a(1) --------->WRKY18(1) --------->MYB59                --------->ARR14(2)    <--------
-------->TOE2(3) <-----------HVH21    ----------->ARR10              <---------ARR14(2)   --------->ICU4
 
atcctaagtatctccgaccgggtcaatgggttatcattagttagatctttggtttggattttgctaaacgagtatttgtaacgttatttagtaaatattt  17004000
                                 --------->HSFC1(2)
                                 <---------HSFB2a(1)
                                 --------->HSFB2a(1)                              <---------ARR11(3)
                           ---------->DOF2                                      --------->ICU4
                       <---------ETT(2)                             --------->ZAT6--------->ARR11(3)
                       --------->ETT(2)                            <-----------------AG   ----------
                  --------->At4g35610        <---------ANAC55(2)  <-----------GT1--------->YAB1
                  <---------At4g35610        --------->ANAC55(2)  --------->MYB52(1)    <-----------RAV1(1)
=====================================================================================MADS_MADS
-----MYB46(3)     ----------->RAV1(2)      <-----------GT1   --------->AHL20(2) <---------YAB1<-----
-AHL20(2)       <-----------GT1  <---------HSFC1(2)     ----------->RAV1(1)--------->ANAC55(2)<-----
 
gttgattcttggacatatttcacctgtcgacaaagaaaattccattttacttaacccagccccaaaaaataacagtataggtaatgatattatgtcgctt  17004100
                                                                                                 <--
                                                                                                <---
                                                                                               <----
                                                                                              <-----
                                                                      --------->MYB52(1)     -------
                                                                  --------->ANAC58          --------
                                                                  --------->ANAC58          <-------
        --------->YAB1                                     ------>MYB46(1)                 <--------
 ----------->GT1                                           ------>MYB83  <-----------RAV1(1)--------
>ID1 <---------ICU4               --------->YAB1        --------->DEAR3(2)                 -------->P
----DAG2<-----------GT1--------->GLK1(2)                --------->MYB46(3)                --------->MYB52(1)
-----DOF2            <---------KAN4(1)   ------------>CBF ----------->RAV1(1)            -----------
 
taagtagataattacaacgtttgaataatctgcatattcaaaatttcaatagagttggaaccaacatcgaagcaaactgttggaaaacaagactaaccgt  17004200
     <---------ARR14(2)
     --------->ARR14(2)
     <---------ARR11(1)
     <-----------ARR10
     ------->TEIL
    <---------CCA1(2)
  --------->ANAC55(2)
  <---------ANAC55(2)
 ------->TEIL
-------------AtSPL3
------ANAC46
-----MYB52(1)
------HVH21
>GAMYB<---------CCA1(2)
->DEAR3(2)                                                                 -------->P
-----AtMYB77                                                     --------->AHL20(2)
-At5g28300          <---------AHL20(2)                  <---------------AtSPL8
->MYB46(3)        ----------->TBP                       --------------->AtSPL3
------------>TaNAC69(2)    ------->TEIL               ------->TEIL        <-----------GT1          <
 
cgtgtacgtatctcttcgtctatatatatgtatgtgtgcataaattttaaaaacatgtactcgtacaaaaaaataagttaccagatggaagaggtaatgt  17004300
                                                              <---------GLK1(2)
                                                          <------NtERF2
                                                     --------->ANAC58
                                                     --------->ANAC58
                                                    --------->DAG2
         --------->ANAC46                          ---------->DOF2
         --------->ANAC55(1)                    --------->LBD16
         --------->ANAC58                      --------->HSFB2a(2)
         --------->ANAC58                      <---------HSFB2a(2)                               ---
        <---------LBD16                       <---------LBD16 --------->ARR14(2)                 <--
        --------->LBD16                      --------->MYB52(1)--------->GLK1(2)             -------
   ------>ZmHOX2a(2)                         -------->P   <---------LBD16                 ------>ZmHOX2a(2)
 --------->ARR11(3)                      --------->At4g35610  <---------ARR14(2)          ----------
 <---------ARR11(3)      ---------->DOF2 --------->ZAT2  ------>NtERF2                   <------ZmHOX2a(2)
--------->YAB1       ----------->GT1     <---------At4g35610--------->LBD16             <---------ARR11(3)
---------ATHB12  ------->TEIL            <---------ZAT2  --------->MYB52(1)             --------->ARR11(3)
 
caatgatcttccacggaatgaaactagttaaatcgctcgagtccagcttaccggaaaagccaccggaatctctattgacatctcttgacgagatcgtaaa  17004400
                                                           --------->TOE2(3)    <---------MYB46(3)
                            ----------->GT1               <---------ANAC46    <---------MYB52(1)
                           --------->ARR11(3)      --------->LBD16       --------->MYB52(1)
------>ARR11(3)     <---------At4g35610       --------->GLK1(1)          ------>MYB46(1)  <-------GAMYB
-------ARR11(3)     --------->At4g35610       <---------GLK1(1)          ------>MYB83     --------->At4g35610
--->DOF2          <---------DEAR3(1)         --------->ARR11(3)        --------->AtMYB61 --------->MYB52(2)
->GT1   --------->AtLEC2   <---------ARR11(3)<---------ARR11(3)        <---------MYB59   <---------MYB46(3)
 
gacattcagtgatgcaaacgagcggctgaagatgttactagagattaagaactccgagactgcgttaaacaaaaccaaaccggtgattgtgtccgttgca  17004500
                                                               --------->ANAC46
                                                               <---------TGA1a
                                                               --------->TGA1a
                                                               --------->bZIP60(2)
                                                               <---------O2
                                                               --------->O2
                                                             <---------ALFIN1
                                                            <---------WRKY12
                                                           --------->TCP16(2)
                                                          --------->PCF2
                                                          --------->ARR14(2)
                                                          <---------ARR14(2)
                                                          <---------TCP16(1)
                                                          <---------PCF5
                                                          <---------TCP11(2)
                                                          <---------TCP20
                            <---------At4g35610           <---------PCF2
                            --------->At4g35610          <------NtERF2
                        <---------ARR14(2)               --------->ATERF1(1)
                        --------->ARR14(2)              <---------MYB46(3)
                        <-----------HVH21              <---------ANAC46
                  <---------ARR14(2)                   <---------ANAC58     --------->MYB52(1)  ----
                  --------->ARR14(2)                   <---------ANAC58   <---------MYB52(2)    ----
             --------->At4g35610                      <---------LBD16    --------->ANAC58       ----
             <---------At4g35610                  --------->ALFIN1       --------->ANAC46   <-------
           <-----------RAV1(2)                 <---------TOE1(3)         --------->ANAC58   --------
  <---------ARR11(3)  --------->LBD16          <---------TOE2(3)<-----------HVH21 --------->ANAC58
  --------->ARR11(3)<---------LBD16       <---------MYB46(3)<---------WRKY38(1)   --------->ANAC58 -
 
aaccagatgttgatgcagatggaaccgggtctgatgcaagagtattggttaaggtatggcgggtccacgtcgtctcaaggaacggaggccatgttccaga  17004600
                                                        ========================HOX2a_HOX2a
                                                       --------->ARR14(1)
                                                       --------->CCA1(2)
                                                       =========================HOX2a_HOX2a
                                                       <------ZmHOX2a(2)
                                                      --------->ARR11(1)
                                                      <---------ARR14(2)
                                                      --------->ARR14(2)
                                                      --------->AGP1
                                                      <---------ARR11(3)
          <---------At4g35610              <------NtERF2------>ZmHOX2a(2)                --------->LBD16
          <-------GAMYB                    --------->At4g35610                          <---------ANAC46
         <---------MYB46(3)                <---------ZAT14           <---------ARR14(2)<------NtERF2
<---------At4g35610                     <---------At4g35610        <---------MYB46(3)  <---------At4g35610
--------->At4g35610                     --------->At4g35610     --------->MYB52(1)--------->ANAC58
<---------ZAT2            ---------->DOF2  --------->ZAT14    --------->ATERF1(1) --------->ANAC58
--------->ZAT2       <---------ANAC46  <---------RAP2.3(1)   ------>NtERF2   --------->ANAC58
----->ANAC58         --------->ALFIN1  ------>NtERF2  --------->ARR11(3)     --------->ANAC46
----->ANAC58       <---------MYB46(3) <---------RAP2.3(2)  --------->RAP2.3(1)------>NtERF2
----->ANAC46      <---------AtMYB61   <---------RAP2.3(3) --------->LBD16    --------->ANAC58
--HSFB2a(2)       --------->ALFIN1    <---------RAP2.6(2)<---------DEAR3(1)<---------ALFIN1
->HSFB2a(2)    <---------AtMYB61     --------->RAP2.6(3)<---------LBD16  ------>ZmHOX2a(1)     -----
------>TEIL<---------MYB52(1)      ----------->HVH21----------->ARR10--------->ARR14(2)--------->At4g35610
 
cgcagctcatggccgttgatggtggtggagaaaggaatttgacggctgcagtagaaagatccggcgctagcggttcctccacgccaaggcagcggagaag  17004700
                                                                          <---------ANAC46
                                                                          <---------ANAC58
                                                                          <---------ANAC58
                                                                        --------->ARR11(3)
                                                                        <---------AHL20(2)
                             --------->AHL20(2)                      --------->AHL20(2)
                       ----------->GT1                               <---------ICU4
                      <---------HSFB2a(2)       <---------ANAC58    <---------AHL20(2)         <----
                      --------->HSFB2a(2)  <---------YAB1           <---------ATHB51          <-----
                 <---------AHL20(2)    ----------->GT1              <---------ATHB12          <-----
              <---------AHL20(2)      <---------TOE2(3)    --------->ANAC55(1)               <------
    --------->CCA1(2)<---------LBD16---------->DOF2        --------->ANAC46       ---------->DOF2
------>GT1  <---------YAB1   <---------AHL20(2) <---------ANAC58    --------->AHL20(2) <-------TEIL
 
gtaaaatatacaagtattattttatctggaaatttataacaaaggtataattcgtgctatacatgtaacaaataatttcttggaacaaagtgcatataac  17004800
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AGI:  At2g40740.1   
Description:  WRKY55 (WRKY DNA-binding protein 55); transcription factor. Identical to WRKY transcription factor 55 (WRKY55) [Arabidopsis Thaliana] (GB:Q9SHB5;GB:Q7G9H9); similar to WRKY53 (WRKY DNA-binding protein 53), DNA binding / protein binding / transcription activator/ transcription factor [Arabidopsis thaliana] (TAIR:AT4G23810.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41522.1); contains InterPro domain DNA-binding WRKY; (InterPro:IPR003657)
Range:  from: 17004255    to: 17006355    Orientation: Forward
Links:  TAIR  MIPS 
 
 
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