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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<---------
AHL20(2)
--------->
AHL20(2)
<---------
YAB1
---------
ICU4
--------
HAHB4
-------->
ATHB51
--------->
LBD16
--------
YAB1
<---------
ANAC58
------->
ICU4
<---------
ANAC58
-----
HAHB4
<---------
WRKY12
<---------
ANAC46
------
ICU4
<---------
WRKY38(1)
------>
NtERF2
----->
YAB1
--------->
WRKY18(1)
--------->
At4g35610
-----
ATHB12
<---------
ANAC46
------>
ZmHOX2a(1)
---->
ICU4
<---------
bZIP60(2)
<---------
At4g35610
-----
YAB1
<---------
ANAC58
--------->
ARR14(2)
-->
YAB1
<---------
ANAC58
<---------
ARR14(2)
--------->
MYB52(1)
--
AHL20(2)
--------->
ARR11(3)
<-----------
GT1
<---------
ANAC55(1)
-
cattattaattaagtctcaaaacatatatagaagaccatgacttggtcaatgttattaccagttcctctgccgtgtttataacaaaaaacgaactcgccc
17003900
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
<---------
WRKY12
<---------
AGP1
<---------
WRKY38(1)
<---------
ARR11(3)
--------->
LBD16
--------->
AGP1
------>
NtERF2
--------->
ARR11(3)
<---------
ETT(1)
<---------
CCA1(2)
--------->
DEAR3(1)
--------->
TOE2(3)
----------->
GT1
----------->
HVH21
--------->
ATHB12
<---------
MYB52(1)
<---------
GLK1(1)
--------->
YAB1
--------------->
AGL15
<---------
ARR14(2)
<---------
ICU4
======================
<---------
ARR11(3)
<--------
HAHB4
--------->
TOE2(3)
--------->
ARR14(2)
<---------
YAB1
----------->
GT1
--------->
ARR11(3)
--------->
ICU4
<----------
DOF2
<-----------
GT1
<----
------>
ZmHOX2a(1)
--------->
WRKY18(1)
--------->
MYB59
--------->
ARR14(2)
<--------
-------->
TOE2(3)
<-----------
HVH21
----------->
ARR10
<---------
ARR14(2)
--------->
ICU4
atcctaagtatctccgaccgggtcaatgggttatcattagttagatctttggtttggattttgctaaacgagtatttgtaacgttatttagtaaatattt
17004000
--------->
HSFC1(2)
<---------
HSFB2a(1)
--------->
HSFB2a(1)
<---------
ARR11(3)
---------->
DOF2
--------->
ICU4
<---------
ETT(2)
--------->
ZAT6
--------->
ARR11(3)
--------->
ETT(2)
<-----------------
AG
----------
--------->
At4g35610
<---------
ANAC55(2)
<-----------
GT1
--------->
YAB1
<---------
At4g35610
--------->
ANAC55(2)
--------->
MYB52(1)
<-----------
RAV1(1)
=====================================================================================
MADS_MADS
-----
MYB46(3)
----------->
RAV1(2)
<-----------
GT1
--------->
AHL20(2)
<---------
YAB1
<-----
-
AHL20(2)
<-----------
GT1
<---------
HSFC1(2)
----------->
RAV1(1)
--------->
ANAC55(2)
<-----
gttgattcttggacatatttcacctgtcgacaaagaaaattccattttacttaacccagccccaaaaaataacagtataggtaatgatattatgtcgctt
17004100
<--
<---
<----
<-----
--------->
MYB52(1)
-------
--------->
ANAC58
--------
--------->
ANAC58
<-------
--------->
YAB1
------>
MYB46(1)
<--------
----------->
GT1
------>
MYB83
<-----------
RAV1(1)
--------
>
ID1
<---------
ICU4
--------->
YAB1
--------->
DEAR3(2)
-------->
P
----
DAG2
<-----------
GT1
--------->
GLK1(2)
--------->
MYB46(3)
--------->
MYB52(1)
-----
DOF2
<---------
KAN4(1)
------------>
CBF
----------->
RAV1(1)
-----------
taagtagataattacaacgtttgaataatctgcatattcaaaatttcaatagagttggaaccaacatcgaagcaaactgttggaaaacaagactaaccgt
17004200
<---------
ARR14(2)
--------->
ARR14(2)
<---------
ARR11(1)
<-----------
ARR10
------->
TEIL
<---------
CCA1(2)
--------->
ANAC55(2)
<---------
ANAC55(2)
------->
TEIL
-------------
AtSPL3
------
ANAC46
-----
MYB52(1)
------
HVH21
>
GAMYB
<---------
CCA1(2)
->
DEAR3(2)
-------->
P
-----
AtMYB77
--------->
AHL20(2)
-
At5g28300
<---------
AHL20(2)
<---------------
AtSPL8
->
MYB46(3)
----------->
TBP
--------------->
AtSPL3
------------>
TaNAC69(2)
------->
TEIL
------->
TEIL
<-----------
GT1
<
cgtgtacgtatctcttcgtctatatatatgtatgtgtgcataaattttaaaaac
atgtactcgtacaaaaaaataagttaccagatggaagaggtaatgt
17004300
<---------
GLK1(2)
<------
NtERF2
--------->
ANAC58
--------->
ANAC58
--------->
DAG2
--------->
ANAC46
---------->
DOF2
--------->
ANAC55(1)
--------->
LBD16
--------->
ANAC58
--------->
HSFB2a(2)
--------->
ANAC58
<---------
HSFB2a(2)
---
<---------
LBD16
<---------
LBD16
--------->
ARR14(2)
<--
--------->
LBD16
--------->
MYB52(1)
--------->
GLK1(2)
-------
------>
ZmHOX2a(2)
-------->
P
<---------
LBD16
------>
ZmHOX2a(2)
--------->
ARR11(3)
--------->
At4g35610
<---------
ARR14(2)
----------
<---------
ARR11(3)
---------->
DOF2
--------->
ZAT2
------>
NtERF2
<------
ZmHOX2a(2)
--------->
YAB1
----------->
GT1
<---------
At4g35610
--------->
LBD16
<---------
ARR11(3)
---------
ATHB12
------->
TEIL
<---------
ZAT2
--------->
MYB52(1)
--------->
ARR11(3)
caatgatcttccacggaatgaaactagttaaatcgctcgagtccagcttaccggaaaagccaccggaatctctattgacatctcttgacgagatcgtaaa
17004400
--------->
TOE2(3)
<---------
MYB46(3)
----------->
GT1
<---------
ANAC46
<---------
MYB52(1)
--------->
ARR11(3)
--------->
LBD16
--------->
MYB52(1)
------>
ARR11(3)
<---------
At4g35610
--------->
GLK1(1)
------>
MYB46(1)
<-------
GAMYB
-------
ARR11(3)
--------->
At4g35610
<---------
GLK1(1)
------>
MYB83
--------->
At4g35610
--->
DOF2
<---------
DEAR3(1)
--------->
ARR11(3)
--------->
AtMYB61
--------->
MYB52(2)
->
GT1
--------->
AtLEC2
<---------
ARR11(3)
<---------
ARR11(3)
<---------
MYB59
<---------
MYB46(3)
gacattcagtgatgcaaacgagcggctgaagatgttactagagattaagaactccgagactgcgttaaacaaaaccaaaccggtgattgtgtccgttgca
17004500
--------->
ANAC46
<---------
TGA1a
--------->
TGA1a
--------->
bZIP60(2)
<---------
O2
--------->
O2
<---------
ALFIN1
<---------
WRKY12
--------->
TCP16(2)
--------->
PCF2
--------->
ARR14(2)
<---------
ARR14(2)
<---------
TCP16(1)
<---------
PCF5
<---------
TCP11(2)
<---------
TCP20
<---------
At4g35610
<---------
PCF2
--------->
At4g35610
<------
NtERF2
<---------
ARR14(2)
--------->
ATERF1(1)
--------->
ARR14(2)
<---------
MYB46(3)
<-----------
HVH21
<---------
ANAC46
<---------
ARR14(2)
<---------
ANAC58
--------->
MYB52(1)
----
--------->
ARR14(2)
<---------
ANAC58
<---------
MYB52(2)
----
--------->
At4g35610
<---------
LBD16
--------->
ANAC58
----
<---------
At4g35610
--------->
ALFIN1
--------->
ANAC46
<-------
<-----------
RAV1(2)
<---------
TOE1(3)
--------->
ANAC58
--------
<---------
ARR11(3)
--------->
LBD16
<---------
TOE2(3)
<-----------
HVH21
--------->
ANAC58
--------->
ARR11(3)
<---------
LBD16
<---------
MYB46(3)
<---------
WRKY38(1)
--------->
ANAC58
-
aaccagatgttgatgcagatggaaccgggtctgatgcaagagtattggttaaggtatggcgggtccacgtcgtctcaaggaacggaggccatgttccaga
17004600
========================
HOX2a_HOX2a
--------->
ARR14(1)
--------->
CCA1(2)
=========================
HOX2a_HOX2a
<------
ZmHOX2a(2)
--------->
ARR11(1)
<---------
ARR14(2)
--------->
ARR14(2)
--------->
AGP1
<---------
ARR11(3)
<---------
At4g35610
<------
NtERF2
------>
ZmHOX2a(2)
--------->
LBD16
<-------
GAMYB
--------->
At4g35610
<---------
ANAC46
<---------
MYB46(3)
<---------
ZAT14
<---------
ARR14(2)
<------
NtERF2
<---------
At4g35610
<---------
At4g35610
<---------
MYB46(3)
<---------
At4g35610
--------->
At4g35610
--------->
At4g35610
--------->
MYB52(1)
--------->
ANAC58
<---------
ZAT2
---------->
DOF2
--------->
ZAT14
--------->
ATERF1(1)
--------->
ANAC58
--------->
ZAT2
<---------
ANAC46
<---------
RAP2.3(1)
------>
NtERF2
--------->
ANAC58
----->
ANAC58
--------->
ALFIN1
------>
NtERF2
--------->
ARR11(3)
--------->
ANAC46
----->
ANAC58
<---------
MYB46(3)
<---------
RAP2.3(2)
--------->
RAP2.3(1)
------>
NtERF2
----->
ANAC46
<---------
AtMYB61
<---------
RAP2.3(3)
--------->
LBD16
--------->
ANAC58
--
HSFB2a(2)
--------->
ALFIN1
<---------
RAP2.6(2)
<---------
DEAR3(1)
<---------
ALFIN1
->
HSFB2a(2)
<---------
AtMYB61
--------->
RAP2.6(3)
<---------
LBD16
------>
ZmHOX2a(1)
-----
------>
TEIL
<---------
MYB52(1)
----------->
HVH21
----------->
ARR10
--------->
ARR14(2)
--------->
At4g35610
cgcagctcatggccgttgatggtggtggagaaaggaatttgacggctgcagtagaaagatccggcgctagcggttcctccacgccaaggcagcggagaag
17004700
<---------
ANAC46
<---------
ANAC58
<---------
ANAC58
--------->
ARR11(3)
<---------
AHL20(2)
--------->
AHL20(2)
--------->
AHL20(2)
----------->
GT1
<---------
ICU4
<---------
HSFB2a(2)
<---------
ANAC58
<---------
AHL20(2)
<----
--------->
HSFB2a(2)
<---------
YAB1
<---------
ATHB51
<-----
<---------
AHL20(2)
----------->
GT1
<---------
ATHB12
<-----
<---------
AHL20(2)
<---------
TOE2(3)
--------->
ANAC55(1)
<------
--------->
CCA1(2)
<---------
LBD16
---------->
DOF2
--------->
ANAC46
---------->
DOF2
------>
GT1
<---------
YAB1
<---------
AHL20(2)
<---------
ANAC58
--------->
AHL20(2)
<-------
TEIL
gtaaaatatacaagtattattttatctggaaatttataacaaaggtataattcgtgctatacatgtaacaaataatttcttggaacaaagtgcatataac
17004800
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AGI:
At2g40740.1
Description:
WRKY55 (WRKY DNA-binding protein 55); transcription factor. Identical to WRKY transcription factor 55 (WRKY55) [Arabidopsis Thaliana] (GB:Q9SHB5;GB:Q7G9H9); similar to WRKY53 (WRKY DNA-binding protein 53), DNA binding / protein binding / transcription activator/ transcription factor [Arabidopsis thaliana] (TAIR:AT4G23810.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41522.1); contains InterPro domain DNA-binding WRKY; (InterPro:IPR003657)
Range:
from: 17004255
to: 17006355
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
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