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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
ATHB12
<---------
YAB1
---------
TOE2(3)
---------
TOE1(3)
--------->
RVE1(1)
------->
MYB52(1)
------->
TEIL
--------->
ARR11(3)
--------
DOF5.7(2)
<---------
YAB1
--------->
GLK1(2)
------
MYB52(2)
------->
TEIL
<---------
ARR11(3)
-----
At4g35610
<---------
GLK1(2)
<---------
GLK1(2)
---->
At4g35610
<---------
CCA1(2)
<-----------
GT1
ctaacgatagagatgattcgaagtgagttttgtaatcgatttttaggcctgaatctcatgaatgtgaattgttcataaacattttacaaaatctctgtaa
16983500
<---------
ANAC58
<---------
ANAC46
<---------
ANAC58
--------->
ZAT18
--------->
ZAT14
--------->
ARR11(3)
<---------
LBD16
<---------
YAB1
<---------
ZAT14
------>
ZmHOX2a(2)
<---------
ICU4
--------->
GLK1(2)
--------->
ARR11(3)
--------->
YAB1
<---------
ARR11(3)
<---------
ARR11(3)
<---------
AHL20(2)
--------->
ALFIN1
<---------
TOE2(2)
--------->
YAB1
<---------
ARR14(2)
<---------
TOE1(2)
------
--------->
REM1(1)
--------->
ARR14(2)
--------->
ALFIN1
<---------
ANAC46
<----------
DOF2
atttttctcttacatctataaaaatgatgtttcagt
atcttgtttagagtggagtgtggaatttggaataggcttcgtatgatcttcagactttcggagc
16983600
-------->
P
------>
MYB46(1)
--------->
MYB52(1)
------>
MYB83
--------->
MYB52(1)
------>
MYB83
------>
MYB46(1)
----------->
HVH21
<---------
MYB55(2)
--------->
MYB46(3)
--------->
ANAC58
--------->
ANAC46
--------->
ANAC58
<---------
ALFIN1
<-------
TEIL
--------->
SPL7
---------->
DOF2
<---------------
AtSPL8
--------->
At5g28300
<---------
ANAC46
--------->
TOE2(3)
------------>
CBF
--------->
ARR14(2)
--------->
TOE1(3)
--------->
AHL20(2)
--------->
CCA1(2)
<---------
ARR14(2)
----------->
GT1
----------->
GT1
--------->
AHL20(2)
>
NtERF2
----------------->
AGL1
--------->
TOE2(3)
<------
ZmHOX2a(2)
catggatataagtatgggtgtttcaaattcgggtacacccaaccggtttaatccaaacttaaaccgtaaaaagccgatcaaaaaaataaacaatgcgcat
16983700
--------->
ANAC55(2)
<---------
ANAC58
<---------
ANAC55(1)
<---------
ANAC55(2)
<---------
ANAC58
<---------
ANAC46
<-------
GAMYB
<-----------------------
TaNAC69(2)
<------
NtERF2
<---------
TGA2(2)
<------
NtERF2
----------->
TGA1
<---------
bZIP60(1)
----------->
HVH21
--------->
bZIP60(1)
<-----------
HVH21
<---------
ANAC46
<---------
DOF5.7(2)
--------->
ALFIN1
--------->
DOF5.7(2)
------------>
CBF
<---------
DEAR3(1)
--------->
PCF2
--------->
ANAC58
<------
NtERF2
<---------
ZAT14
<----
<-----------
TCP11(1)
--------->
ANAC58
----------->
GT1
--------->
ZAT14
<-------
<----------
DOF2
------------>
CBF
<-----------
RAV1(2)
<------
ZmHOX2a(1)
<------------
CBF
<---------
MYB46(3)
gggctttgaagttgagaggcccacaatttttgaaggctcagacgtaaacggtgacgtataggaggcaaaacccttgcaattgcagtgtcgtcgtcgttga
16983800
<---------
ANAC46
--------------------->
WRI1
<---------------------
WRI1
--------->
ARR11(3)
--------->
YAB1
--------->
MYB52(1)
--
--------->
ANAC58
<---------
ANAC58
--------->
MYB46(3)
--------->
ANAC58
-----
ANAC46
--------->
ANAC58
<---------
ANAC58
----------->
RAV1(1)
--------->
ANAC58
--
MYB52(1)
---------->
DOF2
--------->
MYB52(2)
--------->
ZAT18
---------->
DOF2
gtagtcgaagacggagggaaagaaacagagaacttgtttgtttcgtcgaagaataagatg
atgaagagagcccaacaatcggcaagagaaacaaagcaag
16983900
--------->
At4g35610
<---------
At4g35610
<---------
ZAT2
---------->
DOF2
<----------
DOF2
----------->
HVH21
--------->
ANAC58
<---------
ZAT18
<---------
ARR11(3)
--------->
ANAC58
<---------
MYB46(3)
--------->
ZAT2
<-------
---------->
DOF2
<---------
MYB52(1)
------>
MYB46(1)
---------
------->
At4g35610
<---------
MYB46(3)
------>
MYB83
--------->
ZAT2
<-
aagctaaagatgctagcaaagcgaagagcggtttgttcgcttcttgttccttctcttcacttggtttagataccaagctctctgaccagctcaaag
gttc
16984000
--------->
LBD16
<---------
ANAC58
<---------
ANAC55(1)
<----------
DOF2
<-----------
GT1
------>
ZmHOX2a(1)
<---------
At4g35610
<---------
ANAC58
--
GLK1(2)
<---------
At4g35610
--------->
At4g35610
<---------
ANAC46
---------->
DOF2
>
HSFB2a(1)
------>
NtERF2
<----------
DOF2
<---------
ZAT18
--------->
ANAC55(2)
<------
ZmHOX2a(1)
---------
DOF2
--------->
TOE2(3)
--------->
ZAT18
<-----------
GT1
--------->
ANAC46
<-
tcttttttacctctgccgatgttgacatcctttgtttatgcctagtgagcttaaactttgagtttttccgtgtcaatttacacag
aaaggatgggttttg
16984100
<
------>
ZmHOX2a(1)
-
<----------
DOF2
-
<---------
MYB52(1)
------>
ZmHOX2a(1)
<-
------>
ZmHOX2a(1)
<---------
ARR14(2)
<-------
<---------
ARR14(2)
------->
TEIL
--------
--------->
ANAC58
--------->
ARR14(2)
<-------
------>
ZmHOX2a(1)
--------->
ANAC46
<---------
CCA1(2)
<---------
ANAC46
--------
At4g35610
--------->
ANAC58
<---------
ANAC46
<----------
DOF2
--
aagctcctactcttgtacaagctcaagcaattcctgttattctctctggtcgagatgt
gtatccttttcctacaaatttctgtcttctttttgtgtgaac
16984200
<---------
HSFB2a(2)
--------->
HSFB2a(2)
---------
ICU4
<---------
MYB52(1)
-------->
ATHB12
<---------
AHL20(2)
----------------->
AGL1
----
-------->
YAB1
--------->
AHL20(2)
<-----------------
AGL1
<---
--------
YAB1
--------->
CCA1(2)
------>
MYB83
<------
--
ZAT14
<---------
MYB52(1)
-------->
P
---------->
DOF2
->
ZAT18
<------
MYB83
<---------
At4g35610
------>
MYB46(1)
<------
--
ZAT18
<------
MYB46(1)
<---------
ARR11(3)
--------->
MYB52(1)
<------
------->
ICU4
--------->
MYB59
--------->
ARR11(3)
<---------
ALFIN1
<---------
ZAT14
tatgattacatttgtagtttggtttgttttcagttaacttgagatatataaatgtatag
acttgttaatgctccaaccggtactggaaagactatagcgt
16984300
--------->
ANAC58
--------->
KAN4(2)
--------->
ANAC58
<-------
TEIL
------>
NtERF2
<--------
P
----->
ARR14(2)
<---------
TOE1(3)
------
ARR14(2)
--------->
KAN4(2)
------>
ZmHOX2a(2)
---
ANAC58
<---------
AtLEC2
<---------
TOE2(3)
--------->
REM1(1)
---
ANAC58
<-----------
HVH21
=================
HOX2a_HOX2a
<----------
DOF2
---
ANAC46
--------->
WOX13(1)
------>
ZmHOX2a(1)
<----------
DOF2
>>>>>>>
ZML2
atttggcacccctcatccatcacttgcagggtcattctcctaaggttgatcgttctcatggaacttttg
gtatgtgcttttgttctagctacaatttagt
16984400
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AGI:
At2g40690.1
Description:
GLY1 (SUPPRESSOR OF FATTY ACID DESATURASE DEFICIENCY 1); glycerol-3-phosphate dehydrogenase (NAD+). similar to glycerol-3-phosphate dehydrogenase (NAD+) / GPDH [Arabidopsis thaliana] (TAIR:AT5G40610.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41518.1); contains InterPro domain NAD-dependent glycerol-3-phosphate dehydrogenase, N-terminal; (InterPro:IPR011128); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040); contains InterPro domain Dehydrogenase, multihelical; (InterPro:IPR013328); contains InterPro domain 6-phosphogluconate dehydrogenase, C-terminal-like; (InterPro:IPR008927); contains InterPro domain NAD-dep
Range:
from: 16981070
to: 16983536
Orientation: Forward
Links:
TAIR
MIPS
AGI:
At2g40700.1
Description:
DEAD/DEAH box helicase, putative (RH17). Identical to DEAD-box ATP-dependent RNA helicase 17 (RH17) [Arabidopsis Thaliana] (GB:Q7XJN0;GB:Q9ZS04); similar to DEAD/DEAH box helicase, putative [Arabidopsis thaliana] (TAIR:AT5G65900.1); similar to DEAD-box ATP-dependent RNA helicase 17 (GB:Q0DLB9); similar to unnamed protein product [Vitis vinifera] (GB:CAO65202.1); similar to putative ATP-dependent RNA helicase [Oryza sativa] (GB:AAK73153.1); contains InterPro domain RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014); contains InterPro domain Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); contains InterPro domain DEAD-l
Range:
from: 16983861
to: 16986636
Orientation: Forward
Links:
TAIR
MIPS
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publications
when using AthaMap.
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