AthaMap TU-Logo
Search
 
   Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
Go to graphical and table display 

1        10        20        30        40        50        60        70        80        90        100 
 --------->LBD16
 <---------LBD16
<---------ANAC58                                  <---------ANAC58
<---------ANAC58                                  <---------ANAC58
<---------LBD16                                XXXXXXXXXXXXXXXXXXXX>MIR863-5P
<---------ANAC46                             <---------ICU4
---------LBD16                           <-------TEIL <---------YAB1      --------->MYB52(1)
-----ANAC58           ---------->DOF2   --------->CCA1(2)        ----------->GT1 --------->ALFIN1
-----ANAC58    ----------->RAV1(1) ---------->DOF2<---------ANAC46 ----------->GT1--------->At4g35610
 
gttgcggggaagttgagaccacagataaaggcttcacttaaagatacattatggcttattaatctctagggtgaaaataacgaagtgctgaagaaaaact  16267500
                                   <---------YAB1
                         ------>MYB83
                         ------>MYB46(1)
                       --------->MYB46(3)
                       <---------MYB52(2)
                       --------->DEAR3(1)
                       <---------MYB46(2)
                      --------->ANAC46
        <------------MYB.PH3(2)<XXXXXXXXXXXXXXXXXXXXMIR419                      ----------->GT1
      <-----------GT1 --------->ANAC58                                       <----------DOF2
  <----------DOF2     --------->ANAC58                              --------->ATHB12            <---
 
ctgttcttttaacaaactcccttgcaccgaacaacattctcattgttcatcgacctatggaagaccaaaaacgattgctactttggtaaattttgtaaac  16267600
                           --------->YAB1
                       --------->AHL20(1)
                  <------MYB46(1)
                  <------MYB83
                  <---------ANAC46                 --------->ARR11(3)
                  ----------->GT1                  --------->AHL20(1)
                 --------->MYB55(2)                <---------AHL20(1)
                 <---------MYB46(3)                <---------ARR11(3)
                <---------ANAC46                >>>>>>>>>>GT-3b
                --------->ALFIN1             ----------->GT1                                --------
         ---------->DOF2  <---------YAB1     --------->ANAC58                               <-------
       <---------YAB1  <---------ARR11(3)--------->YAB1                                ---------->DOF2
     --------->At4g35610  <---------AHL20(2) --------->ANAC58                      --------->At5g28300
-------DOF2     <---------MYB55(1)       ----------->GT1        <-----------GT1   ----------->GT1
 
tttagggcatatgaaagcggtgggtatatattatagtttcacaatggtaagaaaaatatttgggatgttacagtatttttaggcatggtaaaaaggccca  16267700
                                                        --------->YAB1
                                                    <---------AHL20(2)
                                                    --------->AHL20(2)
                                                <---------AHL20(2)
                                               --------->AHL20(1)
             <---------ANAC55(2)               <---------AHL20(1)                                ---
             --------->ANAC55(2)               <---------AHL20(2)                       <----------DOF2
       --------->AHL20(2)        ----------->GT1--------->AHL20(2)                  <---------CCA1(2)
--------->AGL1                <---------ANAC46 --------->AHL20(2)                 <---------ANAC58
----------AGL1                <---------bZIP60(2)  <---------AHL20(2)             <---------ANAC58
 
tattggacataaaaatatgtaatccctcaaatgaagtggaaattagataatttatttatttataaaactctgaatttagataatttcttatcttttgttt  16267800
                                            <---------ANAC46
                                            <---------ANAC58
                               <------------CBF
                             <---------AHL20(1)
                             --------->AHL20(1)                 --------->ZAT18
                             --------->ARR11(3)        --------->YAB1                           ----
                           --------->AHL20(1)          --------->TOE2(3)                       <----
                           <---------AHL20(1)        <---------ARR11(3)         --------->AHL20(2) -
       <---------GLK1(2)  --------->AHL20(2)<---------ANAC58    <---------ZAT18 <---------AHL20(2)<-
   ---------->DOF2    --------->AHL20(2)<------------CBF  <------------CBF <-------TEIL   --------->DAG2
-------->GT1  <-----------RAV1(1)     --------->ICU4 --------->ARR11(3)   <-----------GT1---------->DOF2
 
ttgtaaaaaagaatttcatgttggataaaatatatattgcatttattgtgtgtgactatcttattggtggacaaaatatacatttttttaaaaaaagtat  16267900
           <------MYB83
           <------MYB46(1)           <---------ATHB12
 --------->At4g35610   ----------->GT1--------->YAB1
----->YAB1--------->MYB59           ------>MYB83                           <-------GAMYB
-----YAB1 <---------TOE2(3)   *TSS  ------>MYB46(1)             <---------MYB52(1)
-------->YAB1         ----------->GT1--------->MYB46(3)        <-------GAMYB<--------P
--------YAB1        <---------LBD16--------->WOX13(1)         <-----------RAV1(1)            -------
 
tatcatcggaaattaggtttttcgacgggaaaaaaaaccaatcaccataacaaaatccagaggctctgttgttcttggggttgaatgtgtaatgtctcat  16268000
                   <---------ANAC46
                <---------SPL7
        ------>ZmHOX2a(2)
       --------->GLK1(1)
       <---------GLK1(1)                        <-------GAMYB
      <-----------ARR10                         ----------->GT1                     --------->WOX13(1)
      <---------ARR14(2)                       ----------->GT1               <---------ICU4       <-
      <---------AGP1--------->LBD16            <---------MYB46(3)     ------>ZmHOX2a(2)--------->YAB1
      --------->ARR14(2)                   <---------ANAC58          <------ZmHOX2a(2) --------->TOE2(3)
     <---------CCA1(2) <--------P          <---------ANAC58     ------>MYB83 --------->YAB1  <------
  <---------LBD16 <---------LBD16      <---------DAG2           ------>MYB46(1)  <---------ARR11(3)-
-->YAB1<------ZmHOX2a(2)               <----------DOF2      ------->TEIL    <---------ATHB12 <------
 
aagtcttcggatctcacttcgtccgggtatgtgttctactcgcttttcgtctgttaaaaactggaccttccgatcgctaatcaatatcaatcttagcttt  16268100
                                    <---------MYB52(1)
                                    --------->ARR14(2)
                              --------->ZAT2
                              <---------At4g35610
                              <---------ZAT2
      <---------LBD16         --------->At4g35610
    <---------SPL7         ------>ZmHOX2a(1)   <---------HSFB2a(2)                            ------
----------GT1         <---------CCA1(2)   <----------DOF2                             <---------ZAT14
----DOF2        <---------GLK1(2)   <---------GLK1(2)                           --------->TOE2(3)
--------->ID1   --------->ARR11(3)  <---------ARR14(2)                          --------->YAB1<-----
---DAG2 --------->LBD16   --------->TOE2(3)    --------->HSFB2a(2)           --------->WOX13(1)
 
ttttcgtcttccggttttagattttgtatcctaagctccgatactctttacgagaagcgtttttatttcaagctcagagtcaatcttagtatagggctgc  16268200
                                    --------->DAG2
                         <-----------RAV1(1)
           <---------ANAC58  <-------GAMYB                                       --------->DAG2
           <---------ANAC46 <---------MYB46(3)                     --------->ANAC58
           <---------ANAC58<---------AtMYB61              <----------DOF2      <---------ATHB12
      <---------AtLEC2   ------>ZmHOX2a(1)     <----------DOF2     --------->ANAC58
--->At4g35610    <------ZmHOX2a(2) ---------->DOF2    <---------GLK1(2)    --------->MYB46(3)
----At4g35610    ===============HOX2a_HOX2a<---------ARR14(2)    ---------->DOF2---------->DOF2  ---
 
taatggttttcatgtcttggatcacatcctgtggttgaaaaaggagtattctttactgattcttttgagaaagcaataaccaataaagtagaaggctctc  16268300
                                                    <---------MYB52(1)
                                               <-----------GT1
                                           --------->AHL20(2)
                                           --------->ATHB51
             <---------GLK1(2)          --------->YAB1
         <---------LBD16          <---------------AtSPL8                                   ---------
     ----------->HVH21            --------------->AtSPL8---------->ID1        <---------At4g35610
    <---------WOX13(1)--------->CCA1(2) --------->TOE2(3)       --------->ARR11(3)        <---------ATHB12
--->ZmHOX2a(1)--------->GLK1(2)  ---------->DOF2<---------At5g28300   ---------->DOF2    <---------TOE2(3)
 
cttcgtaattgacctggaatctgtgatataagtattgaaagtaccataatttacagtttgtctctcagttcttgaaagtttagatgctgtctaatgatat  16268400
<- Previous    Next ->

AGI:  At2g38950.1   
Description:  transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein. similar to transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein [Arabidopsis thaliana] (TAIR:AT1G08620.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40616.1); contains InterPro domain Transcription factor jumonji (InterPro:IPR013129); contains InterPro domain Transcription factor jumonji, JmjN (InterPro:IPR003349); contains InterPro domain Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347); contains InterPro domain Zinc finger, C5HC2-type; (InterPro:IPR004198)
Range:  from: 16267931    to: 16272297    Orientation: Forward
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

    printer-friendly version