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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
LBD16
<---------
LBD16
<---------
ANAC58
<---------
ANAC58
<---------
ANAC58
<---------
ANAC58
<---------
LBD16
XXXXXXXXXXXXXXXXXXXX>
MIR863-5P
<---------
ANAC46
<---------
ICU4
---------
LBD16
<-------
TEIL
<---------
YAB1
--------->
MYB52(1)
-----
ANAC58
---------->
DOF2
--------->
CCA1(2)
----------->
GT1
--------->
ALFIN1
-----
ANAC58
----------->
RAV1(1)
---------->
DOF2
<---------
ANAC46
----------->
GT1
--------->
At4g35610
gttgcggggaagttgagaccacagataaaggcttcacttaaagatacattatggcttattaatctctagggtgaaaataacgaagtgctgaagaaaaact
16267500
<---------
YAB1
------>
MYB83
------>
MYB46(1)
--------->
MYB46(3)
<---------
MYB52(2)
--------->
DEAR3(1)
<---------
MYB46(2)
--------->
ANAC46
<------------
MYB.PH3(2)
<XXXXXXXXXXXXXXXXXXXX
MIR419
----------->
GT1
<-----------
GT1
--------->
ANAC58
<----------
DOF2
<----------
DOF2
--------->
ANAC58
--------->
ATHB12
<---
ctgttcttttaacaaactcccttgcaccgaacaacattctcattgttcatcgacctatggaagaccaaaaacgattgctactttggtaaattttgtaaac
16267600
--------->
YAB1
--------->
AHL20(1)
<------
MYB46(1)
<------
MYB83
<---------
ANAC46
--------->
ARR11(3)
----------->
GT1
--------->
AHL20(1)
--------->
MYB55(2)
<---------
AHL20(1)
<---------
MYB46(3)
<---------
ARR11(3)
<---------
ANAC46
>>>>>>>>>>
GT-3b
--------->
ALFIN1
----------->
GT1
--------
---------->
DOF2
<---------
YAB1
--------->
ANAC58
<-------
<---------
YAB1
<---------
ARR11(3)
--------->
YAB1
---------->
DOF2
--------->
At4g35610
<---------
AHL20(2)
--------->
ANAC58
--------->
At5g28300
-------
DOF2
<---------
MYB55(1)
----------->
GT1
<-----------
GT1
----------->
GT1
tttagggcatatgaaagcggtgggtatatattatagtttcacaatggtaagaaaaatatttgggatgttacagtatttttaggcatggtaaaaaggccca
16267700
--------->
YAB1
<---------
AHL20(2)
--------->
AHL20(2)
<---------
AHL20(2)
--------->
AHL20(1)
<---------
ANAC55(2)
<---------
AHL20(1)
---
--------->
ANAC55(2)
<---------
AHL20(2)
<----------
DOF2
--------->
AHL20(2)
----------->
GT1
--------->
AHL20(2)
<---------
CCA1(2)
--------->
AGL1
<---------
ANAC46
--------->
AHL20(2)
<---------
ANAC58
----------
AGL1
<---------
bZIP60(2)
<---------
AHL20(2)
<---------
ANAC58
tattggacataaaaatatgtaatccctcaaatgaagtggaaattagataatttatttatttataaaactctgaatttagataatttcttatcttttgttt
16267800
<---------
ANAC46
<---------
ANAC58
<------------
CBF
<---------
AHL20(1)
--------->
AHL20(1)
--------->
ZAT18
--------->
ARR11(3)
--------->
YAB1
----
--------->
AHL20(1)
--------->
TOE2(3)
<----
<---------
AHL20(1)
<---------
ARR11(3)
--------->
AHL20(2)
-
<---------
GLK1(2)
--------->
AHL20(2)
<---------
ANAC58
<---------
ZAT18
<---------
AHL20(2)
<-
---------->
DOF2
--------->
AHL20(2)
<------------
CBF
<------------
CBF
<-------
TEIL
--------->
DAG2
-------->
GT1
<-----------
RAV1(1)
--------->
ICU4
--------->
ARR11(3)
<-----------
GT1
---------->
DOF2
ttgtaaaaaagaatttcatgttggataaaatatatattgcatttattgtgtgtgactatcttattggtggacaaaatatacatttttttaaaaaaagtat
16267900
<------
MYB83
<------
MYB46(1)
<---------
ATHB12
--------->
At4g35610
----------->
GT1
--------->
YAB1
----->
YAB1
--------->
MYB59
------>
MYB83
<-------
GAMYB
-----
YAB1
<---------
TOE2(3)
*
TSS
------>
MYB46(1)
<---------
MYB52(1)
-------->
YAB1
----------->
GT1
--------->
MYB46(3)
<-------
GAMYB
<--------
P
--------
YAB1
<---------
LBD16
--------->
WOX13(1)
<-----------
RAV1(1)
-------
tatcatcggaaattaggtttttcgacggga
aaaaaaaccaatcaccataacaaaatccagaggctctgttgttcttggggttgaatgtgtaatgtctcat
16268000
<---------
ANAC46
<---------
SPL7
------>
ZmHOX2a(2)
--------->
GLK1(1)
<---------
GLK1(1)
<-------
GAMYB
<-----------
ARR10
----------->
GT1
--------->
WOX13(1)
<---------
ARR14(2)
----------->
GT1
<---------
ICU4
<-
<---------
AGP1
--------->
LBD16
<---------
MYB46(3)
------>
ZmHOX2a(2)
--------->
YAB1
--------->
ARR14(2)
<---------
ANAC58
<------
ZmHOX2a(2)
--------->
TOE2(3)
<---------
CCA1(2)
<--------
P
<---------
ANAC58
------>
MYB83
--------->
YAB1
<------
<---------
LBD16
<---------
LBD16
<---------
DAG2
------>
MYB46(1)
<---------
ARR11(3)
-
-->
YAB1
<------
ZmHOX2a(2)
<----------
DOF2
------->
TEIL
<---------
ATHB12
<------
aagtcttcggatctcacttcgtccgg
gtatgtgttctactcgcttttcgtctgttaaaaactggaccttccgatcgctaatcaatatcaatcttagcttt
16268100
<---------
MYB52(1)
--------->
ARR14(2)
--------->
ZAT2
<---------
At4g35610
<---------
ZAT2
<---------
LBD16
--------->
At4g35610
<---------
SPL7
------>
ZmHOX2a(1)
<---------
HSFB2a(2)
------
----------
GT1
<---------
CCA1(2)
<----------
DOF2
<---------
ZAT14
----
DOF2
<---------
GLK1(2)
<---------
GLK1(2)
--------->
TOE2(3)
--------->
ID1
--------->
ARR11(3)
<---------
ARR14(2)
--------->
YAB1
<-----
---
DAG2
--------->
LBD16
--------->
TOE2(3)
--------->
HSFB2a(2)
--------->
WOX13(1)
ttttcgtcttccggttttagattttgtatcctaagctccgatactctttacgagaagcgtttttatttcaagctcagagtcaatcttagtatagggctgc
16268200
--------->
DAG2
<-----------
RAV1(1)
<---------
ANAC58
<-------
GAMYB
--------->
DAG2
<---------
ANAC46
<---------
MYB46(3)
--------->
ANAC58
<---------
ANAC58
<---------
AtMYB61
<----------
DOF2
<---------
ATHB12
<---------
AtLEC2
------>
ZmHOX2a(1)
<----------
DOF2
--------->
ANAC58
--->
At4g35610
<------
ZmHOX2a(2)
---------->
DOF2
<---------
GLK1(2)
--------->
MYB46(3)
----
At4g35610
===============
HOX2a_HOX2a
<---------
ARR14(2)
---------->
DOF2
---------->
DOF2
---
taatggttttcatgtcttggatcacatcctgtggttgaaaaaggagtattctttactgattcttttgagaaagcaataaccaataaagtagaaggctctc
16268300
<---------
MYB52(1)
<-----------
GT1
--------->
AHL20(2)
--------->
ATHB51
<---------
GLK1(2)
--------->
YAB1
<---------
LBD16
<---------------
AtSPL8
---------
----------->
HVH21
--------------->
AtSPL8
---------->
ID1
<---------
At4g35610
<---------
WOX13(1)
--------->
CCA1(2)
--------->
TOE2(3)
--------->
ARR11(3)
<---------
ATHB12
--->
ZmHOX2a(1)
--------->
GLK1(2)
---------->
DOF2
<---------
At5g28300
---------->
DOF2
<---------
TOE2(3)
cttcgtaattgacctggaatctgtgatataagtattgaaagtaccataatttacagtttgtctctcagttcttgaaagtttagatgctgtctaatgatat
16268400
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AGI:
At2g38950.1
Description:
transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein. similar to transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein [Arabidopsis thaliana] (TAIR:AT1G08620.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40616.1); contains InterPro domain Transcription factor jumonji (InterPro:IPR013129); contains InterPro domain Transcription factor jumonji, JmjN (InterPro:IPR003349); contains InterPro domain Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347); contains InterPro domain Zinc finger, C5HC2-type; (InterPro:IPR004198)
Range:
from: 16267931
to: 16272297
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
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