Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                  -----                                                                                               ------                                                                                     <---------ANAC58                                                                                     <---------O2                                                                                     --------->ANAC55(2)                                                                                     --------->O2                                                                                     <---------ANAC55(1)                                                                                     <---------bZIP60(1)                                                                                     --------->bZIP60(1)                                                                                     --------->TGA1a                                                        <------ZmHOX2a(1)            <---------TGA1a                                                     <-----------RAV1(2)             <---------bZIP60(2)                                      <-----------HVH21--------->ANAC58              <---------ANAC55(2)                                     --------------------->WRI1                      <---------ANAC46                                     ------>ZmHOX2a(1) --------->ANAC58              <---------ANAC58           <---------At4g35610     ----------->RAV1(2)<---------TOE2(2)             ----------->STF1      ----------->HVH21          <---------PCF2 --------->DEAR3(1)                 <---------TGA2(2)     <-------MYC3            --------->LBD16    ----------->HVH21                 ----------->TGA1<--     ------->MYC3           --------->O2       --------->MYB46(3)                 ----------->HVH21   ------->TEIL             <---------O2       --------->DEAR3(2)               <---------At4g35610 -CCA1(2)  --------->At4g35610 <---------ATERF1(1) --------->ANAC46             --------->At4g35610   taacgcatgtgacagaggcctagactcttcccgtggctcctgtgagagaaccgacgcaggaaaatgtcgagatagagaattgagatgacgtgagttaaca  15546800                                                  <---------MYB52(2)                                                --------->MYB52(1)                                               ------->GAMYB     <---------MYB46(3)                       <---------MYB55(2) <------ZmHOX2a(1)        --------->ZAT6      --------->MYB46(3) ------>RAV1(1) --------->YAB1                <---------MYB52(2) --->MYB46(3)   <---------ICU4               ------>MYB83                     --------->ZAT6 ---------RAV1(2)      --------->YAB1        ------>MYB46(1)     --------->YAB1                <-----   acaggagttgttgtttgatcatgaagcatcactactacagaaataccaacaaacgaacaaaaacaaatcagaaaatgctaacacaaactcgtatacatac  15546900                                                    --------->ARR14(2)                                              <----------ID1                                         --------->MYB52(1)                                    ------                                       <---------MYB46(2)                               --------->At4g35610                      ------->TEIL     <---------MYB52(2)                  --------------->AGL15             <---------GLK1(1)         <---------MYB111(1) ---------->DOF2 <---------------AGL15 --TEIL      --------->GLK1(1)   <---------HSFB2a(2)<---------ARR14(2)  <-----------GT1 <---------At4g35610   actaatttcaaattgaaatccatgaacttcaaattccagtaactaacagagacaaatccagcaaagacacaatatttctatatgaagagtagctgaataa  15547000                                                                                     <---------ANAC58                                                                                     <---------ANAC58                                                                                    --------->ZAT2                                                                                    --------->At4g35610                                                                                    <---------HSFC1(2)                                                                                    --------->HSFB2a(1)                                                                                    --------->HSFC1(2)                                                                                    <---------At4g35610                                                                                   <---------TOE1(2)                                                                                  <---------CCA1(2)                                                                                --------->TOE2(1)                                                                                --------->TOE1(1)                                                                              <---------ANAC46                       --------->At4g35610                                 <---------ARR14(2)             <------ZmHOX2a(1)    --------->At4g35610       --------->At4g35610------>ZmHOX2a(1)   <-  --------->MYB52(1)   <---------At4g35610<----------DOF2 <------ZmHOX2a(1)<---------ARR11(3)   ----- --->YAB1<------ZmHOX2a(1)        <---------At4g35610 --------->TOE1(2)    --------->ARR14(2) <------   gaagtaccagaggaaggagaagagtagctgctcttgagatgagtctttgtctgaaacgaaggagatgaagaaaccaagttcctcgtagcttccatttcac  15547100                                                <------ZmHOX2a(1)                                    --------->ANAC58                                    --------->ANAC46         --------->YAB1                                   --------->LBD16        --------->YAB1      ---------->DOF2             --------------->AGL15>>>>>>>>>TBF1                          ------- --------GLK1(2)              <---------ANAC58<---------TOE1(3)                          ----------->HVH21 ---->ANAC46       --------->GLK1(2)--------->ANAC58>>>>>>>>>TBF1               <---------ZAT14 -----GT1     ---------->DOF2 <---------ANAC58<---------TOE2(3)                 --------->ZAT14   agaatcaccaaagaataaaagactctgtttttgcttccacgaatggctaaggaagaagaagaataagaacatgaggctactctacagagccatgacgaac  15547200              <---------ALFIN1            <---------ALFIN1            --------->ANAC58        <---------ALFIN1       <------NtERF2                     --------->AHL20(2)      ------>NtERF2     <---------AHL20(2)                  --------->AtLEC2      ----------->RAV1(1)<---------AHL20(2)           ---------->ID1  <---------GLK1(2)     <----------ID1     --------->AHL20(2)           <-------GAMYB  ----------->ARR10  <----------DOF2  --------->DAG2   ------------>CBF  --------->ICU4 <-----------RAV1(1)                <---------DAG2 ---------->DOF2  *TSS  <---------AHL20(1)          <---------MYB46(3)<---------ARR14(2)            = -->MYB52(1)--------->ANAC58    ----------->GT1     --------->MYB52(2)--------->ARR11(3)            -   agataaggcgacacacacactcccaattttttttttgtaaaaattaaaacttgtttgttgccatggaagtcagattttgttctctctccctttttttttt  15547300              <-----------RAV1(1)                                                                  --           <------ZmHOX2a(2)                                                                   ------          --------->ARR11(3)                                                                  -------       --------->ALFIN1              ---------->DOF2                <---------ATHB12        <-------- =================HOX2a_HOX2a     <----------DOF2       ----------->GT1       *TSS     <---------MYB52(1) ----->ZmHOX2a(1)          <------------CBF           ---------->DOF2--------->YAB1   <----------DOF2   tcctacagagtggatcatgttgggccttatattgggcttaaaagcccaaattatccaaaagttaattcgaatcatcttcttctccctcctttagtaaccc  15547400  --------->GLK1(2)  --------->ARR14(1) --------->ARR14(2) <---------ARR14(2)                                                                     <---------ARR14(2) --------->ARR11(3)                                                                 --------->ZAT14 <---------GLK1(2)                                                                  <---------ZAT14 --------->ARR10           <-----------HVH21                                        --------->ZAT18 --->TOE1(3)               <-----------TGA1                     <---------At4g35610 --------->At4g35610 -->ZAT6      --------->ARR14(2)                         <---------ARR14(2)   --------->GLK1(2) ---GT1       <---------ARR14(2)                         --------->ARR14(2)  <---------GLK1(2)   taagattctctctgtgaatccttgttcatcgtcactgaaattagtttacaaaatcgacgaattcggagatgatttttcagaatgtgtgcagaaatgagtc  15547500                                                                          <-------GAMYB                                                                          <------NtERF2                                                                       <---------At4g35610                                                                       <---------LBD16                                                                       --------->ATERF1(1)                                                                       <------NtERF2                                                                      <---------RRTF1(1)                                                                      <---------RAP2.6(1)                                                                      <---------ERF1                                                                      ------>NtERF2                                                                      <---------ATERF1(1)                                                                      <---------DEAR4(2)                                                                      <---------ORA47(2)                                                                     <---------RAP2.3(2)                                                                     <---------ANAC46                                                                     <---------RRTF1(3)                                                                     <---------RRTF1(2)                                                                     --------->ATERF1(2)                                                                     <---------RAP2.3(3)                                           <------MYB46(1)           <---------RAP2.6(2)                                           <------MYB83              --------->ALFIN1                                           <---------ANAC58          <---------DEAR3(1)                                           <---------ANAC58          --------->DEAR3(1)                                           <---------ANAC46          <---------ATERF1(2)                                           <---------ANAC55(1)      <------NtERF2  <---------LBD16                                          <---------DEAR3(1)        --------->ATERF1(1)                                          --------->MYB46(2)        <---------ABI4(1)                                        --------->ARR14(2)          --------->RAP2.3(1)                                        <---------MYB52(1)         <---------DEAR4(2)------>NtERF2                                   --------->ANAC58                <---------ATERF1(1)                     --------->ARR14(2) <---------ARR14(2)         <---------RAP2.3(1)                     <---------ARR14(2)<---------ZAT2             <---------DEAR3(1)--------->ANAC46                    <---------GLK1(2)  --------->ZAT2        --------->HSFB2a(2)<---------GLK1(1)              <---------ANAC58     --------->ANAC58   <---------ARR14(2) <---------MYB46(3)              <---------ANAC58     --------->ANAC46   --------->ARR14(2)<---------ANAC46      --------->ANAC58           ---------->DOF2     <---------GLK1(1)<---------RAP2.3(1) <------ZmHOX2a(1)      --------->ANAC46   <---------ANAC58<---------ZAT14     ------>ZmHOX2a(1) ------->TEIL   -------      --------->ANAC58   <---------ANAC58--------->ZAT14  ------>ZmHOX2a(1)   <---------CCA1(2) <xxxx   caacttcaacgctatagcttccgaatcgcgttcccaaacgcagttcggtgtttcgaaatcctcctcgagcggcggcggatgtatctccgccaggactaaa  15547600                                                        --------->RAP2.3(2)                                                        --------->DEAR3(1)                                                       <------NtERF2                                                       --------->ATERF1(1)                                                       --------->RRTF1(1)                                                       --------->RAP2.3(1)                                                      <---------RAP2.3(1)                                                      <---------ATERF1(1)                                                      ------>NtERF2                                                     --------->ANAC46                                                     <---------ATERF1(2)                                                     --------->RAP2.3(2)                                                     --------->DEAR3(1)                                                     <---------DEAR3(1)                                                     --------->ATERF1(2)                                                     --------->RAP2.3(3)                                                    --------->ATERF1(1)                                                    --------->DEAR4(2)                                                    --------->ERF1                                              <-----------ARR10                                            --------->LBD16                                            ------>NtERF2                  ------->GAMYB            --------->ATERF1(2)                 --------->MYB46(3)        <---------RAP2.6(2)               <---------DOF5.7(2)         <---------RAP2.3(3) <---------GLK1(2)        <-----------HVH21               --------->MYB52(1)          <---------DEAR3(1)  --------->ARR11(3)  --------->At4g35610              <---------WRKY12             <---------ATERF1(2) --------->ARR14(2)  --------->ZAT2             --------->DOF5.7(2)           <---------RAP2.3(2) <---------ARR14(2)  <---------ZAT2          <---------TOE2(2)               --------->RAP2.6(3) <------ZmHOX2a(1)<-----------HVH21       --------->ANAC58                  ------>NtERF2--------->ABI4(1)       <---------ANAC58       --------->ANAC46      <---------MYB52(1)     --------->RAP2.3(1)       <---------ANAC55(2)       --------->ANAC58      <------NtERF2<---------LBD16------>NtERF2        <---------ANAC58 <-----------HVH21<---------SPL7   <-----------GT1 <---------ATERF1(1)    <---------DOF5.7(2) --->DOF2 <---------TOE2(3) <---------RAP2.6(3)   --------->ANAC46<-----------GT1  <---------At4g35610 xxxxxxxxxxxxsmallRNA(i)   --------->DEAR3(1)<------NtERF2<---------MYB52(1)  >>>>>>>>CAMTA3   ------   gaccgtcacacgaaggttaacggacgaagccgtcgagttacgatgccggctctcgccgccgctaggattttccagttaacgcgtgagctcggtcacaaaa  15547700  Previous    Next  AGI:  At2g36990.1    Description:  SIGF (RNA POLYMERASE SIGMA-70 FACTOR); DNA binding / DNA-directed RNA polymerase/ transcription factor. similar to SIGB (SIGMA FACTOR B), DNA binding / DNA-directed RNA polymerase/ transcription factor [Arabidopsis thaliana] (TAIR:AT1G08540.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO18182.1); contains InterPro domain RNA polymerase sigma-70 factor; (InterPro:IPR000943); contains InterPro domain RNA polymerase sigma-70 region 3; (InterPro:IPR007624); contains InterPro domain Winged helix repressor DNA-binding (InterPro:IPR011991); contains InterPro domain RNA polymerase sigma factor, SigB/SigC/SigD, plastid (InterPro:IPR016 Range:  from: 15544337    to: 15547218    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g37000.1    Description:  TCP family transcription factor, putative. similar to TCP family transcription factor, putative [Arabidopsis thaliana] (TAIR:AT3G47620.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO18178.1); contains InterPro domain Transcription factor, TCP (InterPro:IPR005333) Range:  from: 15547378    to: 15548327    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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