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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<---------
ANAC58
--------->
ANAC55(2)
--------->
RAP2.6(3)
------>
ZmHOX2a(1)
<---------
ANAC55(1)
------->
TOE2(3)
------>
ZmHOX2a(2)
<---------
ANAC46
--------->
ANAC58
------>
ANAC46
--------->
HSFB2a(1)
<---------
ANAC58
<---------
At4g35610
---->
REM1(1)
<---------
HSFC1(2)
<---------
ANAC55(2)
--------->
At4g35610
-----
ALFIN1
<---------
HSFB2a(1)
<---------
ANAC58
<---------
ZAT2
--
TEIL
--------->
HSFC1(2)
<---------
ANAC58
--------->
ZAT2
----->
AtSPL8
<------
ZmHOX2a(2)
<---------
ANAC46
--------->
ATHB12
----->
AtSPL3
--------->
ARR14(2)
--------->
O2
<---------
YAB1
-------
------
AtSPL8
<---------
LBD16
<---------
YAB1
<---------
O2
<---------
GLK1(2)
--------->
ZAT18
->
AGL1
<---------
ZAT18
<---------
ARR14(2)
<---------
MYB52(1)
<---------
At4g35610
--------->
ANAC58
acctcaatttcggcactcttctctcggatccttccatggtatgattctgttttttctcgtgacttgcgtgtttagatgctcaccattggagctcgctaac
14583900
<---------
HSFC1(1)
--------->
ATHB12
<---------
ANAC58
<---------
YAB1
<---------
ANAC58
<---------
DAG2
--------->
HSFC1(1)
<----------
DOF2
----------->
GT1
--------->
ANAC58
------>
ZmHOX2a(1)
<---------
ALFIN1
<---------
HSFB2a(2)
--------->
ANAC58
<------
ZmHOX2a(1)
-->
MYB52(1)
<---------
CCA1(2)
--------->
HSFB2a(2)
---------->
DOF2
<---------
TOE2(3)
tgcaattcctatatgttgattttgaaacttgtatcatccacttttgatttgattctagaatgttattagcttgagcaaagcaaaatcaattctgaggaag
14584000
-
<
<
-
<
-
<
--------->
YAB1
-
<---------
ICU4
--
--------->
ATHB12
<-
--------->
ATHB51
==
<--------
ATHB1
--
-------->
ATHB1
<-
<------------
ATHB5
<-
<---------
ZAT14
<---------
YAB1
<--------
--------->
ZAT14
<---------
ATHB12
<-
--------->
TOE2(3)
--------->
TOE2(3)
--------->
ZAT14
--
<------
ZmHOX2a(2)
<-----------
GT1
--------->
ICU4
<------
ZmHOX2a(1)
--------->
MYB46(3)
<---------
ATHB12
--------->
YAB1
--------->
WOX13(1)
<-
<---------
At4g35610
<---------
ARR11(3)
----------->
TGA1
------------>
ATHB5
<--------
--------->
At4g35610
--------->
ARR11(3)
--------->
YAB1
--------->
TOE1(3)
<---------
ZAT18
<---
agactcatcagacgaacaactatctagagaagatcaaacattagaacactgatgacgaattgtaacctcaaatgagccaatcattgcacaagaggagtgc
14584100
---
<-------
MYC2
------->
MYC3
<-------
MYC3
------>
MYC2
------->
MYC2
-------
MYC4
<-------
MYC4
-------
MYC3
<-------
PIF5
------>
MYC3
------->
MYC4
-------
MYC2
------->
PIF5
<
------>
MYC4
==============
-------
PIF5
<---------
ANAC46
------>
PIF5
<<<<<<<<<<
HY5
-
------->
O2
<---------
O2
<-
-------
ABF1
==============
================================================
bZIP_DOF
--------->
O2
--
------->
ANAC55(2)
<---------
TGA1a
--------
O2
---------->
DOF2
--------->
TGA1a
--------
TGA1a
--------->
ZAT6
==========================
bZIP_DOF
-
ANAC58
----------->
GT1
--------->
YAB1
--------->
PIF3(3)
--------
ANAC55(2)
---------->
DOF2
<---------
ATHB12
<---------
PIF3(3)
------->
TGA1a
<---------------
AGL15
------>
MYB46(1)
<---------
ALFIN1
--------
ANAC46
--------------->
AGL15
------>
MYB83
---------------->
PIF3(2)
-
ANAC58
<---------
ANAC46
----------------->
AGL1
--------->
WOX13(1)
<----------------
------
ALFIN1
<-----------
GT1
--------->
DAG2
------------>
CBF
<---------
ZAT14
-----
cacgtgtttggatgtgtgttttggattatccaaactacaaaaaagggaaacactatctaatctcaccaatcacaaaagagaatagtgccacgtggaaaac
14584200
--------->
TOE1(3)
--------->
AtMYB61
*
TSS
<---------
DAG2
----------->
RAV1(1)
----->
P
--------->
TOE2(3)
---------->
DOF2
---------
ALFIN1
--------->
AtLEC2
======
MYC_MYB
------>
MYB83
<---------
At4g35610
------>
GAMYB
<---------
ALFIN1
------>
MYB46(1)
<---------
ZAT14
--------
MYB55(2)
<---------------------
WRI1
<----------
DOF2
----------->
RAV1(1)
=======
MYC_MYB
<---------
At4g35610
--------->
bZIP60(2)
<---------
At4g35610
------->
MYB46(3)
------>
ZmHOX2a(1)
--------->
ANAC46
--------->
RAP2.6(3)
-------
TaNAC69(2)
<<<<<<<<<
TBF1
--------->
AtMYB61
<---------
CCA1(2)
--------->
At4g35610
---->
MYB46(3)
<<<<<<<<<
TBF1
--------->
At4g35610
--------->
REM1(1)
--------->
ARR14(2)
<--------
aaccaccttaccttcacacttcttcttcttctccttcggcagaccatccaaa
ggccacatcatctctttccacc
atgtctgcagcattgagctcgtctct
14584300
--------->
AtMYB61
------->
GAMYB
--------->
AtMYB61
<---------
MYB55(2)
--------->
MYB46(3)
<---------
MYB111(2)
-------->
P
<<<<<<<<<
GATA-1
------>
MYB46(1)
<<<<<<<<<
GATA-2
------>
MYB83
<<<<<<<<<
GATA-3
--------->
MYB46(3)
--------->
ANAC46
<---------
MYB52(2)
--------->
ANAC46
--------->
ANAC46
--------->
TOE1(3)
--------->
YAB1
--------->
ANAC58
--------->
TOE2(3)
--------->
TOE2(3)
--------->
ANAC58
------>
MYB83
--------->
LBD16
--------->
ZAT18
<<<<<<<<<
GATA-4
--------->
LBD16
--------->
YAB1
-
CCA1(2)
---------->
DOF2
<---------
ETT(2)
<---------
GLK1(2)
--------->
AtMYB61
------>
MYB46(1)
-----
ctacatttccccaaagaaaccttcatgtccacaacaatctcaatccacattcttatccacgaaaccaaccaccatcaaaaccaatctccatagccatcct
14584400
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
--------->
ARR14(3)
<---------
GLK1(2)
<---------
ARR11(3)
--------->
ARR14(2)
<---------
ARR14(3)
--------->
ARR11(3)
<---------
ARR14(2)
---------->
DOF2
<---------
At4g35610
--------->
At4g35610
<----------
DOF2
--------->
At4g35610
<---------
At4g35610
--------->
DAG2
--------->
ZAT14
<-----------
RAV1(2)
<---------
LBD16
--------->
ZAT14
--------->
HSFB2a(2)
<---------
At4g35610
<------
ZmHOX2a(1)
<---------
ZAT14
<---------
HSFB2a(2)
------>
ZmHOX2a(1)
<-----------
RAV1(2)
->
ZmHOX2a(1)
------->
GAMYB
----------->
ARR10
--------->
MYB52(1)
---------->
DOF2
ctcttcactgtagctgatcagacagtaaccctccagatgaaagagaagatcctctgtctcgagctaatgggaattgactcaggaaaagccctttctctca
14584500
--------->
WRKY12
--------->
WRKY38(1)
<---------
ALFIN1
--------->
DEAR3(1)
--------->
At4g35610
---------->
CDC5
--------->
ANAC46
<---------
At4g35610
-------->
P
--------->
At4g35610
<-----------
ARR10
--------->
ZAT2
--------->
GLK1(2)
--------->
ARR11(3)
<---------
ZAT14
--------->
SPL7
--------->
YAB1
--------->
GLK1(2)
<---------
ZAT2
<---------
WRKY18(1)
------>
ZmHOX2a(1)
---------->
DOF2
<---------
GLK1(2)
--------->
ZAT14
--------->
ARR14(2)
<---------
ATHB12
------>
MYB83
--------->
O2
<---------
At4g35610
<---------
ARR14(2)
--------->
WOX13(1)
------>
MYB46(1)
acccatgtctctgctcagccccccttgactccatccaatccgtcctccatttccttcaatcaaaaggaatctacccaaatgacctcccaagaatcttggg
14584600
--------->
TGA2(2)
<-----------
TGA1
<---------
O2
--------->
bZIP60(1)
--------->
O2
--------->
bZIP60(2)
<---------
bZIP60(1)
<---------
TGA2(1)
--------->
ANAC46
<---------
TGA1a
--------->
TGA2(1)
<---------
ALFIN1
------>
ZmHOX2a(1)
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
--------->
ARR11(3)
<---------
ARR14(3)
<---------
ARR14(2)
------>
ZmHOX2a(2)
<---------
ARR11(3)
--------->
GLK1(1)
--------->
ARR14(3)
------->
TEIL
--------->
ARR11(3)
--------->
ARR14(2)
--------------->
AtSPL8
<---------
ARR11(3)
<---------
GLK1(2)
<---------
ARR14(2)
<---------
KAN4(2)
<---------
ANAC58
----------->
ARR10
<-----------
HVH21
<-----------
HVH21
--------->
LBD16
=============
HOX2a_HOX2a
--------->
ARR14(2)
==================
HOX2a_HOX2a
<---------
ANAC58
------>
ZmHOX2a(1)
--------->
TGA1a
--------->
ZAT14
------>
ZmHOX2a(1)
<-----------
HVH21
<-----
gatgtgtcctaagatcctcacttccgacgtcagaacagaactgtaccctgttttcatgttcctgtcgaatgatctccatgtccctgagaatgcgttcaga
14584700
-
<
------>
ZmHOX2a(2)
========
<------
ZmHOX2a(2)
<---------
ZAT2
=========
--------->
At4g35610
--------->
ARR11(3)
--------->
ZAT2
<---------
ARR14(3)
<---------
ZAT14
<---------
ARR11(3)
--------->
ZAT14
--------->
GLK1(2)
--------->
ANAC58
--------->
REM1(2)
--------->
ARR14(3)
--------->
ANAC58
------>
ZmHOX2a(1)
<---------
At4g35610
--------->
ARR14(2)
----
At4g35610
--------->
ANAC46
--------->
ALFIN1
<---------
ARR14(2)
agagtgatcaagaaatgtccaaggctccttattagcagtgtagaagaccagctcaaacctgctctcttctacttgcagagacttggtctcaaggatcttg
14584800
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AGI:
At2g34620.1
Description:
mitochondrial transcription termination factor-related / mTERF-related. similar to mitochondrial transcription termination factor-related / mTERF-related [Arabidopsis thaliana] (TAIR:AT2G03050.1); similar to mTERF-like protein [Brassica napus] (GB:ABC70867.1); contains InterPro domain Mitochodrial transcription termination factor-related (InterPro:IPR003690)
Range:
from: 14584253
to: 14585367
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
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