Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100          <-----------GT1     <---------ICU4             <---------YAB1 ------->RAP2.6(2)           <-----------ARR10 --------->RAV1(1)           --------->GLK1(2)                                                      - ---->ANAC58                 <---------ARR11(3)                                                     < ---->ANAC46    <---------ARR11(3)                                                           <------- ---->ANAC58    --------->ARR11(3) <---------WOX13(1)      --------->YAB1        <-----------GT1    - --->DOF2   ---------->DOF2  --------->ARR11(3)   ------->TEIL                 --------->AHL20(2)   <   gccacaatttttacaaaagagcttcagtgaaaatctaattgccaagtctttgaacctctaatcagagctaaatctagtcaatttaacaattctctctttc  14321400                                                                                                    -                                                                                                 ----                                                                                                 ----                                                             ----------->HVH21                 ------                                   --------->ALFIN1       ------->TEIL                        <------   <<<<<<<ZML2                  --------->DAG2         --------->ANAC58                      ------>MYB83 -------->HSFC1(1)             --------->DAG2          --------->ANAC58                      ------>MYB46(1) ---------HSFC1(1)  ----------------->AGL1             --------->ANAC46--------->WOX13(1)   --------- ---DOF2   <-------TEIL       ---------->DOF2   --------->AHL20(2)    --------->AHL20(2)  --------->MYB46(3) -------->HSFB2a(2) ================================================================================= ---------HSFB2a(2) ----------------->AG        --------->YAB1        <---------AHL20(2)<-----------GT1   ttctagaacaaaattcatcaattccaaattggaaaaggtgtttccatcaataaaaacacgaacttgacagaattaatcaacaataccatgtaaccaatca  14321500                    <---------ANAC46                 <---------MYB52(1)              <------------AtMYB77 ------>TEIL  --------->MYB46(3) ----->ANAC58<-----------------AG                                              --------------->AtSPL8 ----->ANAC58<-----------------AGL1                                     <---------YAB1 --->YAB1    <---------At5g28300                                --------->GLK1(2)           <-------- ---ATHB12   -------->P                                        --------->ARR14(2)          <---------DAG2 >WOX13(1)  --------->MYB52(1)              <---------MYB46(3) <---------ARR14(2)        ------->TEIL ==============================MADS_MADS<---------AtMYB61      <---------GLK1(2)   ------->TEIL   cgaatttcaaatactaaccgttgtgggaattggaagcttgaattggtggtttatcaaacaattcagattctcttacaattgtatgtacttgcaccttttg  14321600                                                                  ------->GAMYB                                                                ------>MYB46(1)                                                                ------>MYB83                                                               --------->MYB52(1)                                                              ------->GAMYB             <---------YAB1                                   --------->AtMYB61            --------->TOE2(3)                                <---------MYB52(2)           --------->YAB1                                    <---------MYB55(2)           <---------ICU4                                    --------->MYB46(3)                     <          <---------YAB1                                    --------->ANAC58                        <        <---------ICU4                              <---------------------WRI1    ----------->GT1  <-   --------->AtMYB61                 --------->ARR11(3)     --------->ANAC58--------->At5g28300   <-- --DOF2 --------->YAB1    --------->ETT(1)        <---------DEAR3(1)       ----------->GT1 --------->AHL20(2)   ttcgacctcatcatcatcaatgtccatgtcggaatcagacatcttgaagtcttcggcgaggtaaccaacgcagagagtggtaaattgataaaaaaaaata  14321700             --------->ARR14(2)             <---------SPL7                               --------->MYB59         ==================================HOX2a_HOX2a    --------->MYB46(2)         ------>ZmHOX2a(2)                               <---------MYB55(1)         <---------LBD16                           <---------ARR14(2)     ----------->HVH21                             --------->GLK1(2)   <---------ANAC58                            --------->LBD16   <---------ANAC58                            --------->HSFB2a(2)   <---------ANAC46                        ------>ZmHOX2a(2)  <------NtERF2                           --------->GLK1(1)<------MYB83                        ------  ------>NtERF2                           <---------GLK1(1)----------->GT1                     ------ <---------RAP2.3(1)                --------->ICU4 --------->ARR14(2)                        -------- ------>NtERF2              <---------MYB52(1) <---------HSFB2a(2)       >>>>>>>>>>>>>>>>>LFY<------- ---------DEAR3(1)         <-------GAMYB <---------ARR11(3)<---------ANAC46                --------->MYB52(1) ---------RAP2.3(2)   --------->ZAT18    --------->ARR11(3)<------MYB46(1)  <------------CBF--------- --------LBD16      --------->ZAT2  ==============HOX2a_HOX2a          --------->MYB46(3) --------->AtMYB61 ---------RAV1(1)   <---------ZAT2  ------>ZmHOX2a(1)   <---------MYB52(1)  *TSS    ---------->DOF2   ctgcggcgtgatcggggtccgaagctcgctgttgagtcctgatgatctccgagaatacgtttggtatatcgaaaccaccattgttacaaagaccaccgaa  14321800                                ---------->DOF2                               <---------AHL20(2)                               --------->AHL20(2)                              <---------YAB1                            <---------ICU4                           --------->ICU4                           <---------ATHB51     <---------CCA1(2)     --------->AHL20(2)  <---------AHL20(2)       <---------AHL20(2) --------->AHL20(2)    ------>ZmHOX2a(1)                                             ------>ZmHOX2a(1) >MYB46(1)            --------->TOE2(3)                                             --------->TOE2(3) >MYB83               --------------->AGL15                                 ------>MYB46(1) ->DEAR3(1)          ================================================================================ --MYB46(2)          ----------------->AG <---------ZAT6                    ------>MYB83 >ANAC46          <----------DOF2    <----------DOF2                   <-----------GT1     <---------   ctattttatatctaatgggcctttcctaaataattaaagctttagtattaaggcccatactaaattccaaattttaccaactatttcctaaattaacaca  14321900                 <---------LBD16                --------->MYB52(1)               <---------ARR14(2)               <-----------GT1                                                                 ------            --------->YAB1                                                               <-----------     --------------->AGL15                                                            <----------DOF2     <----------DOF2                                                              -------------------     <---------------AGL15                                                      <---------AtMYB61  <-    <-----------------AGL3              ---------->DOF2     --------->At5g28300 <---------ZAT6 ------    <---------DAG2 --------->LBD16     <---------AHL20(2)   --------->LBD16     --------->ALFIN1 ---- ====================MADS_MADS         --------->AHL20(2)  ----------->GT1  <---------ZAT14    ------ --GT1  <---------YAB1      --------->AtMYB61  --------->GLK1(2)         <XXXXXXXXXXXXXXXXXXXMIR172B*   tcgttgcctttttatagtaaccggattaaaccaaaacaaaattaaagagaatcgaatcaaaccgtgaaaatcgtgaagcgtagtggtgctatattgcacg  14322000                                                                         <------NtERF2                                                                        --------->LBD16                                                                        ------>NtERF2                                                                       <---------DEAR3(1)                                                                       --------->RAP2.3(3)                                                                       <---------ATERF1(2)                                                                       --------->RAP2.3(2)                                                                       --------->ATERF1(2)                                                                       --------->DEAR3(1)                                                                      --------->RAP2.3(1)                                                                      --------->DEAR4(2)                                                                      --------->ATERF1(1)                                                                      --------->ORA47(2)                                                                      <---------LBD16                                                                      <------NtERF2                                                                     <---------ATERF1(1)                                                                     ------>NtERF2                                                                     <---------RAP2.3(1)                                                                    --------->RAP2.3(3)                                                                    --------->RAP2.3(2)                                                                    --------->ATERF1(2)                                                                    <---------ATERF1(2)                                                                    --------->DEAR3(1)                                                                   --------->RAP2.6(1)                                                                   --------->RRTF1(1)                                                                   --------->ERF1                                                                   --------->RAP2.3(1)                                                                   --------->ORA47(2)                                                                   --------->DEAR3(2)                                                                   --------->DEAR4(2)                                          --------->LBD16          --------->MYB46(3)  ------->GAMYB                          --------->ANAC46          --------->ATERF1(1) --->ANAC58                              --------->ANAC58          <---------ABI4(2) -CBF    <-----------HVH21               --------->ANAC58          <------NtERF2 ---->TaNAC69(2)                        <---------LBD16           <---------ATERF1(1) --------DOF5.7(2)                     ------>ZmHOX2a(1)          --------->At4g35610 --->ANAC58                        <---------ARR14(2)            --------->ARR14(2) ----->DOF5.7(2)                   --------->ARR14(2)            <---------ARR14(2)          -------- --->ANAC46         *TSS           --------->GLK1(2)            <------ZmHOX2a(1)            ========   ttaactgtctccatcactgccactggtaaaccctaagaatcctccgcaatttcgcaattttgtgaaggagccgccggctaaatttgatggcagaccaaag  14322100                     <-----------HVH21                    <---------TGA1a                    --------->ETT(2)                  <-----------HVH21                 <-----------RAV1(1)       --------->TOE2(3)      ------>ZmHOX2a(2)     <------ZmHOX2a(2)            <---------ZAT2    --------->ARR14(2)            <---------At4g35610    <---------ARR14(2)            --------->At4g35610    <---------ARR11(3) <---------DEAR3(1)                              --------->SPL7               -    --------->ARR11(3)<------NtERF2                      --------->ANAC58                           -   --------->GLK1(1)<---------ANAC46                     --------->ANAC58                          --   <---------GLK1(1)<---------ETT(2)        <---------MYB52(1)       <-----------HVH21         <----- -->DOF2 <<<<<<<<<WRKY18 <------NtERF2    <---------ANAC58           <---------SPL7          <------- =============================bZIP_DOF    <---------ANAC58   <---------At4g35610             <-------   ttcggagatcgtcaatgctctgtcgtcggagatggaagctgtttccgtttcatcaactcaggcatcttcttcgtccgatggattccagtgagttttctta  14322200         <---------AHL20(1)   --------->TOE2(3)  <---------ICU4  --------->YAB1                                              --------->ALFIN1 <---------ATHB12                            <---------AHL20(1) ----->MYB46(1)                              --------->AHL20(2) ----->MYB83 <-----------GT1                 <---------AHL20(2) ------->WOX13(1)         <----------DOF2    --------->AHL20(1) ------GT1<---------AHL20(2)       --------->ATHB12   --------->ATHB12      --------->DAG2 --ANAC58--------->AHL20(2)       <---------YAB1     <---------AHL20(2)    ---------->DOF2 --ANAC58<---------AHL20(2)     --------->YAB1  <---------AHL20(2)   --------->CCA1(2)   ccaatcatcaatttttttcattttcgcgcttcaattttgatttggattatattatttgattagagtggaagagatgaaaaagctatagcaatttagaagt  14322300  Previous    Next  AGI:  At2g33835.1    Description:  FES1 (FRIGIDA-ESSENTIAL 1); nucleic acid binding. similar to zinc finger protein-related [Arabidopsis thaliana] (TAIR:AT3G18640.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN59796.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571) Range:  from: 14318863    to: 14321776    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g33840.1    Description:  tRNA synthetase class I (W and Y) family protein. similar to ATP binding / aminoacyl-tRNA ligase [Arabidopsis thaliana] (TAIR:AT1G28350.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN65657.1); contains InterPro domain Aminoacyl-tRNA synthetase, class Ib; (InterPro:IPR002305); contains InterPro domain Tyrosine tRNA ligase, archaeal/eukaryotic (InterPro:IPR016485); contains InterPro domain Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial; (InterPro:IPR002307); contains InterPro domain Tyrosyl-tRNA synthetase, class Ib, archaeal/eukaryotic cytosolic; (InterPro:IPR015624); contains InterPro domain Rossmann-like alpha/beta/a Range:  from: 14322020    to: 14324575    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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