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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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1        10        20        30        40        50        60        70        80        90        100 
             ------>ZmHOX2a(2)
            <------ZmHOX2a(2)
            --------->CCA1(2)
           --------->AGP1
           <---------ARR14(2)              <---------ANAC46
           <---------AGP1             <---------O2
           <-----------ARR10          --------->O2
           --------->ARR11(3)         <---------bZIP60(2)
          <---------CCA1(2)        ----------->HVH21
      <-----------HVH21          --------->ANAC46
     --------->TOE1(3)           --------->ANAC58
-------->ANAC58 --------->ANAC46 --------->ANAC58
-------->ANAC46 --------->ANAC58------>MYB83            <---------ANAC46
-------->ANAC58 --------->ANAC58------>MYB46(1)         <---------ANAC58          --------->MYB46(3)
--------HSFB2a(2)   ---------->DOF2--------->ANAC46     <---------ANAC58   <---------MYB46(3)
----->ZAT18<---------ARR11(3) --------->DEAR3(1)--------->ARR14(2)        --------->ALFIN1
------ZAT18--------->ARR14(2) --------->AtMYB61 <---------ARR14(2)        <---------AtMYB61
 
gctcgaaaccttcagatctaagcaaaagagacaccaacgcgacatggctcgaatccatagcttgaagcgagaaccctgtggtcgaacagtcgaagttcgc  12658600
                       <---------HSFC1(1)
                -------->ZAP1
               <---------At5g28300
              <---------WRKY18(1)
             --------->WRKY38(1)
             --------->WRKY45
             ----------->HVH21
             --------->WRKY12
           <----------DOF2
          ------>ZmHOX2a(2)
         <------ZmHOX2a(2)                                           <---------ARR11(3)
        <---------AGP1 <---------HSFB2a(2)                   <---------At4g35610
        <---------ARR11(3)                                   --------->At4g35610
        --------->AGP1 --------->HSFB2a(2)                  ------->TEIL    --------->LBD16
        --------->ARR14(3)                               --------->ANAC46  <---------HSFB2a(2)
        --------->ARR14(2)                             --------->MYB52(1) <---------LBD16
        <---------ARR14(3)  --------->HSFB2a(1)   XXXXXXXXXXXXXXXXXXXX>MIR319A/B
        <---------ARR14(2)  <---------HSFC1(2)    XXXXXXXXXXXXXXXXXXXX>MIR159A
        --------->ARR11(3)  --------->HSFC1(2)    XXXXXXXXXXXXXXXXXXXX>MIR319C
       <---------ARR14(1)   <---------HSFB2a(1)  XXXXXXXXXXXXXXXXXXXX>MIR159C     --------->ICU4
       <---------CCA1(2)  <<<<<<<ZML2         --------->TOE2(3)      --------->ARR11(3)
 --------->WRKY38(1)   --------->HSFC1(1)     --------->TOE1(3)   ----------->RAV1(1)     --------->DAG2
--------->DOF5.7(2) <----------DOF2         --------->GLK1(2)--------->ZAT2--------->HSFB2a(2)     -
 
atcgttcaccagatctttgaccgcttctagaaccttcttcagtagagaaccttgaactaaacgaagctccaacatcttctgggaaattatcgaaaggtta  12658700
                                                                                                   -
                                                                                                  --
                                                                                                  <-
                                                                                          --------->GLK1(2)
                                                                                         <---------ARR11(3)
                                                                              --------->YAB1      <-
                              <---------MYB46(3)                      ----------->GT1    --------->ARR11(3)
                 <---------TOE1(3)                               <---------LBD16       ----------->ARR10
                 <---------TOE2(3)        --------->HSFB2a(2)   <---------LBD16*TSS--------->At4g35610
         --------->MYB52(1) <---------At4g35610 <------ZmHOX2a(1)<---------ANAC46  --------->ZAT2---
         ------------>MYB.PH3(1)          <---------HSFB2a(2)   --------->At4g35610<---------At4g35610
---------->GT1<---------MYB52(1)         <---------LBD16  --------->ICU4     <---------YAB1  <------
 
gagtgtgaatcgaaacggttagggtttttagagctgttgaaatttctgggaggagattgcaattgttagcgggaagtgatattataagctgagattttgt  12658800
                                                                                       <---------ZAT14
                                                                                       <---------ZAT18
           <----------DOF2               ----------->TGA1                              --------->ZAT14
<------NtERF2                            ----------->HVH21                         --------------->AtSPL8
----->NtERF2                         <---------ANAC46                              --------------->AtSPL3
------->bZIP60(1)               --------->LBD16                           ----------->GT1
--------bZIP60(1)               ------>NtERF2                           <------------CBF      ------
--------PCF2                   --------->ANAC46          --------->At4g35610     <-----------GT1
------>RAP2.3(1)              <---------LBD16         <---------YAB1 <---------ANAC55(2)   ---------
-----RAV1(1)    <---------TOE2(3)----------->RAV1(2)--------->YAB1   --------->ANAC55(2)--------->ANAC46
 
ggcgccatttagcgattttagggtatttttgttcccgcctgtgtgtgacgatgaattatcatctgtgtgagtccgtattgtttatttcagtacaccacca  12658900
                                                            <---------At4g35610
                                                            --------->At4g35610
                                                            <---------ZAT2       --------->LBD16
                                                            --------->ZAT2      --------->ANAC46
                                                         <---------At4g35610    --------->LBD16
                                                         --------->At4g35610   <---------HSFB2a(2)
                                                        ------->GAMYB       <---------GLK1(1)
       <----------DOF2                                 --------->MYB46(3)  <---------GLK1(2)
    <---------TOE1(3)                                 ---------->DOF2      --------->ARR14(2)
<----------DOF2                 <----------ID1       ----------->RAV1(1)<---------TOE2(3)
<---------DAG2              <------------CBF         --------->MYB52(1)---------->DOF2
--->AtMYB61               <---------AHL20(2)         <---------ALFIN1<---------YAB1
>AtMYB61                 --------->AHL20(2)      ------>NtERF2----------->GT1  --------->HSFB2a(2) *TSS
 
tcactttaagctttcttatttcatgggtttaaattgggccaaacaaacattcggcccaacagcagctgtaatattaaagattcccgaaaaaatcgaaacg  12659000
                                                              <---------TOE2(3)
                                                         --------->ATHB12
                                                         <---------ICU4
                                                         -------->ATHB1
                                                        <---------YAB1
               <---------TOE2(3)                        <---------ATHB12
               <---------TOE1(3)                  <---------HSFB2a(2)
         <---------------AGL15                    --------->HSFB2a(2)
   <-----------ARR10                          --------->GLK1(1)
   --------->ARR14(2)                         <---------GLK1(1) <------ZmHOX2a(1)      <---------ANAC46
   <---------ARR14(2)           --------->HSFB2a(2)   --------->GLK1(1)         ====================
   --------->GLK1(2)            <---------HSFB2a(2)--------->LBD16              <------ZmHOX2a(1)
  <---------GLK1(1)      <---------ANAC46 >>>>>>>>>TBF1 --------->ICU4        --------->MYB59
 
agagcaaatctgctcttcaaggtaatcttcgtgttcgagactgaagaagaaatccagaaatcattgaggaaggaagagaattaggaaatggcgcatagaa  12659100
                                                                                           ---------
                                                                                           <--------
                                                                              <---------ANAC46
                                                                              <---------ANAC55(2)
                                    <---------GLK1(1)                         <---------ANAC55(1)
                                 <---------YAB1                               --------->TGA1a
                            --------->HSFB2a(1)                               <---------O2 <--------
                   <---------MYB46(3)     --------->WOX13(1)                  --------->O2----------
                  <---------WOX13(1)--------->GLK1(1)                         --------->ANAC55(2)
         <---------O2       <---------KAN4(1)                                 <---------ANAC58
         --------->O2       --------->HSFC1(2)          <---------ANAC58      <---------TGA1a
      <------ZmHOX2a(2)     --------->KAN4(1)--------->YAB1                   <---------ANAC58
     --------->ARR11(3)     <---------HSFC1(2)          <---------ANAC58   ------>ZmHOX2a(1)--------
     <---------ARR11(3)     <---------HSFB2a(1)--------->At4g35610       <---------ICU4   <---------KAN4(2)
=============HOX2a_HOX2a   <---------KAN4(2)<---------ATHB12      ----------->HVH21    ----------->GT1
 
tactgagagatcacgaggctgatggatgggaacgttctgatttcccaatcatctgtgagtcttgtctcggtgacaatccttacgtgagaatggtatattc  12659200
                                                                                    ------>ZmHOX2a(2)
                                                                                   --------->GLK1(1)
                                                                                   <------ZmHOX2a(2)
                                                                                   <---------GLK1(1)
                                                                                  <-----------ARR10
      <---------TOE1(2)                                         <-------TEIL      --------->ARR14(3)
      <---------TOE2(2)                          --------->ARR11(3)               <---------ARR14(2)
     ------>ZmHOX2a(1)                           <---------GLK1(2)                --------->ARR14(2)
>KAN4(1)                                 <---------MYB52(1)<-----------GT1        <---------ARR11(3)
--TaMYB80                               <----------DOF2   <-----------GT1         <---------ARR14(3)
-KAN4(1)                          <---------ANAC58  <---------AHL20(2)            --------->ARR11(3)
>TaMYB80                      <---------GLK1(1)  <---------ARR11(3)       --------->ICU4         ---
->KAN4(2)       ------>ZmHOX2a(1) <---------ANAC58<---------RVE1(1)      <----------DOF2<----------DOF2
 
ttcgcttcctatgtttctcctcaaacaaattcgatttccttgcctttagctagatttttttttaacattcatgtgtctttattaagatctcctttcattt  12659300
                                                                       <---------TOE2(3)
                                                                       <---------TOE1(3)
                                           --------->At4g35610   --------->ARR11(3)              ---
         <---------ANAC58              <---------REM1(1)         <---------ARR11(3)       <---------
         <---------ANAC58 <---------YAB1   <---------At4g35610 <---------TOE2(3)     <---------AHL20(2)
------->ID1          <----------DOF2<---------ZAT6       --------->ATHB12           --------->AHL20(2)
 
gtccattttcgagcttgtttaatgcttttatgtttcttagtgttgaagctgcaattttagtgatttgagattttagggtttaagcgatttaatatacaat  12659400
                                                         <---------MYB46(3)
                                               --------->ARR11(3)
                                               <---------ARR11(3)         <---------ANAC46
                    --------->GLK1(1)         <---------GLK1(1)           <---------ANAC58
                --------->YAB1                --------->GLK1(1)           <---------ANAC58  --------
------>YAB1 --------->ICU4                  --------->YAB1    <---------YAB1         ----------->GT1
--GT1  ----------->GT1         <---------REM1(1)  <----------DOF2    --------->ARR14(2)    <--------
 
tcataacctttggtaaaaatcagaattcatggagttgtagttcaaaatgatatctttggtttgttctgatcaaatttgcttagagggaatgtaattcatt  12659500
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AGI:  At2g29570.1   
Description:  PCNA2 (PROLIFERATING CELL NUCLEAR ANTIGEN 2); DNA binding / DNA polymerase processivity factor. Identical to Proliferating cell nuclear antigen 2 [Arabidopsis Thaliana] (GB:Q9ZW35); similar to PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN), DNA binding / DNA polymerase processivity factor [Arabidopsis thaliana] (TAIR:AT1G07370.1); similar to Proliferating cell nuclear antigen (PCNA) (GB:Q43124); contains InterPro domain Proliferating cell nuclear antigen, PCNA; (InterPro:IPR000730)
Range:  from: 12656983    to: 12658780    Orientation: Reverse
Links:  TAIR  MIPS 
 
AGI:  At2g29580.1   
Description:  zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein. similar to zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT1G07360.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21518.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677)
Range:  from: 12659000    to: 12661413    Orientation: Forward
Links:  TAIR  MIPS 
 
 
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