Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                      <-----------HVH21                                                                   --------->TGA1a                                           <---------ICU4          --------->ANAC58                                        --------->ATHB51           --------->ANAC46                                        <---------ICU4             --------->ANAC58                                        <--------HAHB4             --------->O2                                       --------->ICU4              --------->bZIP60(2)                                     --------------->AGL15         <---------O2                                    ----------------->AGL2       <---------ALFIN1                             <-----------ARR10                  --------->TOE1(2)                             <---------ARR11(3)             --------->ZAT18                <---------YAB1                             --------->ARR14(3)    ------>MYB83--------->DEAR3(2)        --------->YAB1                             --------->ARR11(3)    ==========================MYC_MYB    <---------YAB1                             --------->ARR14(2)    -------->P ------->TEIL        <---------At4g35610                             --------->GLK1(2)     ------>MYB46(1) <---------TGA1a<---------ZAT2                             <---------ARR14(3)   ----------->RAV1(1)             --------->At4g35610                      ---------->ARF1<---------------AGL15  <---------ZAT18       --------->ZAT2 -ARR14(2)            ---------->ID1----------------->AGL3  --------->ZAT14  --------->GLK1(1) >ARR14(2)     <-----------GT1      <-----------------AGL3  <---------ZAT14  <---------GLK1(1)   tccttcaatattgttttaaaccttgtctcaaaatcttctccataattagcaccaacaaggagtgaacccacgtcaagagatttcagctccatgataaata  10720500                                                                             <-----------ARR10                                                                             --------->ARR11(3)  <---               ----------->GT1                                              --------->CCA1(1)    ----         ---------->DOF2                                                    --------->RVE1(1) -------      --------->ANAC46                                                <---------AHL20(2)      <------      ------>MYB83   <---------ARR11(3)                               --------->AHL20(2)   --------->YAB1      ------>MYB46(1)--------->ARR11(3)           ----------->GT1 --------->AHL20(2)      <---------AHL20(2)      --------->ANAC58                           --------->DAG2   <---------AHL20(2)     --------->AHL20(2)      --------->AtLEC2               <----------DOF2        --------->TOE2(3)<---------ARR11(3) -----      --------->ANAC58      ------>ZmHOX2a(1)  ---------->DOF2--------->AHL20(2)      --------->AHL20(2)   gcgaaaccaagcaaagcatgttaaatcttcctctagcctctttgaggggaaaaggtaaataaacttaaatatttaaaaatatctaagtttatataataac  10720600                                                                     <---------AHL20(2)                                                                     --------->AHL20(2)                                                                     <---------ICU4                                                                 <---------YAB1                                                                <---------AHL20(1)                                                                --------->AHL20(1)                                                                --------->AHL20(2)              --------->DAG2                                    <---------AHL20(2)      <--------P             <---------YAB1  <---------YAB1    --------->YAB1 ------------AGL15         <---------ICU4   --------->AHL20(2) <---------ICU4 ----------->AGL15        <---------YAB1    <---------AHL20(2)--------->ICU4 -->YAB1----------->GT1   --------->ICU4  <---------YAB1      <---------YAB1                     <--- -----GT1    ---------->DOF2<---------AHL20(1)             --------->AHL20(2)      --------->DAG2<--- ------------>AGL1     <---------YAB1 --------->ANAC55(2)----------->GT1          ---------->DOF2<---   aatattgggtaagtgaaaagtaattgtcattatttttgacacttatttttataagttagaagtaattataattttttcaaacaaaaaagtaagttttttg  10720700                                                                                    --------->YAB1            <---------YAB1                                                          --------->TOE2(3)          --------->YAB1                                                         <-----------GT1          <---------ICU4       --------->AHL20(2)                                --------->YAB1         --------->ICU4        <---------AHL20(2)     --------->TOE2(3)  --------->AHL20(2)        --------->AHL20(1)    --------->AHL20(2)      --------->TOE1(3)----------->GT1       --------->YAB1         <---------AHL20(2)      <---------------AGL15   --------->YAB1   <-----     --------->AHL20(2) ----------->GT1            <-----------GT1    <---------TOE1(3)  ----------->GT1 ------ANAC58 --------->ARR11(3)            <---------RVE1(1)         <---------TOE2(3) ----------->GT1 ------ANAC46 <---------ARR11(3)           <---------ARR11(3)  ----------->GT1<---------ICU4 <------- ------ANAC58--------->YAB1   <---------AHL20(1)<---------AHL20(2)   ---------->DOF2--------->TOE1(3)   tgtgtgaaaaaataatgatattgagaaggtaatttaattagaggtgatattttataccttaagaagtgtattaaagttaataataaccataagttaaaat  10720800                                                                                            ---------                                                                                            <--------                                                                                           ------>MYB46(1)                                                                                           ------>MYB83                                                                                       ==============                                                                                       ------>ZmHOX2a(2)                                                                                      ===============                                                                                      <------ZmHOX2a(2)                                                                                      *TSS -------->P   --------->At4g35610                             --------->MYB52(2)                <---------ARR14(2)   <---------At4g35610                            <---------TOE1(2)                  <---------ARR11(3)  --------->ANAC58       <-----------RAV1(1)     <---------MYB52(1)       --------->HSFB2a(2)  --------->ANAC58 --------->ATHB12            <---------ANAC58      <<<<<<<<<TBF1   --------->ARR11(3) -------CBF       <---------ATHB12             <---------ANAC58 <----------DOF2      --------->ARR14(2) --YAB1           --------->ICU4      <-----------GT1   <---------ANAC46  <---------HSFB2a(2)   tggtaagctaaatgttagaaatcatttgtgttgtctgaattttcaagtttcgttcgtttcggattactttcttcttctgcaaaaacagatcccaaccatt  10720900     <-------TEIL  --------->HSFB2a(1)                             --------->ZAT6  <---------HSFB2a(1)     <---------ALFIN1      <-----------GT1 >MYB46(3)              <---------ALFIN1    <----------DOF2 -ATHB12        ------>ZmHOX2a(1)           <---------DAG2 ======================HOX2a_HOX2a     <----------DOF2                     <----------DOF2 ======================HOX2a_HOX2a   --------->At4g35610        ----------->GT1            <---------   tcaaaggttcgtcttctccttctcttccacactcttctctgcttcactttttactctatcttcgactagtaatatcgctttcgacttctcaaattacttc  10721000                                                                                                 <---                                                                                                <----                                                                                           --------->ARR11(3)                                                                                           <---------ARR11(3)                                                                                         <---------YAB1                                                                                   <----------DOF2                                                                                  ------>ZmHOX2a(2)     <---------YAB1     <----------DOF2                                         --------->ARR11(3)   <-----------GT1  <----------DOF2                                             <---------ARR11(3) -- --GT1     <-----------GT1       <-----------GT1                       ---------->DOF2 --------->YAB1   tcaagttactatttttctcttcctttctttcaaattttcgttacaaactgagtttgaaactgtttgggttttgtaaagttttgatcttttcatgatattg  10721100                                                                    --------->ICU4        ----------->GT1                                        ----------->GT1 ------ANAC46             <---------ZAT18                 <---------YAB1 -----LBD16             --------------->AtSPL8         <---------YAB1<---------ICU4  <-----------GT1 ------->At5g28300     --------->HSFB2a(2)            --------->KAN4(2)             <-----------GT1   cggtaagagattgttaattcgacttctgggtactcacatttcgatgctcaattgtttattcttatgggtaattttggctagggttttttccaatttctct  10721200                         ------>ZmHOX2a(2)                       <---------ARR14(2)                       <---------ARR11(3)                       --------->ARR11(3)                  --------->MYB52(2)                <--------P          <---------ANAC46      <----------DOF2  --------->ARR14(2)            ------->TEIL   ctcgttctctttcacaaggttagtcgatcttgctcatgtggtatagagtttgatgaatcgagttgtttagtagctattgtacgaactatctcttgatata  10721300                                       --------->ICU4                         --------->AHL20(2)     <---------TOE2(3)            <<<<<<<<<RAP2.2            <---------YAB1           <---------TOE2(3)    <---------At5g28300                <---------ANAC46    <---------TOE2(3)    <---------AHL20(1)     <---------TOE1(3)  <---------ANAC58    <---------TOE1(3)    <---------AHL20(2)     --------->MYB59    <---------ANAC58         <--------  ---------->DOF2 XXXXXXXXXXXXXXXXXXXXX>MIR447A/B        <---------ZAT6                     <--------   gttgtaaaggttttagattgggaacaaaaaatttcactgtgatgtttgtttaggtagtagagttcaattgtgtgaaactctaatttcatagtttgcttaa  10721400  Previous    Next  AGI:  At2g25170.1    Description:  PKL (PICKLE). Identical to CHD3-type chromatin-remodeling factor PICKLE (PKL) [Arabidopsis Thaliana] (GB:Q9S775;GB:Q0WNM8); similar to chromatin remodeling factor, putative [Arabidopsis thaliana] (TAIR:AT4G31900.1); similar to chromatin-remodeling factor CHD3 [Oryza sativa (japonica cultivar-group)] (GB:BAD72546.1); similar to chromatin-remodeling factor CHD3 [Oryza sativa] (GB:AAL47211.1); similar to chromatin-remodeling factor CHD3 [Oryza sativa (indica cultivar-group)] (GB:AAL47203.1); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterP Range:  from: 10720886    to: 10731065    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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